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Gene: Otof (otoferlin) Rattus norvegicus

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Symbol:

Otof

Name:

otoferlin

RGD ID:

620646

Description:

Predicted to enable AP-2 adaptor complex binding activity and calcium ion binding activity. Involved in cochlea development. Located in apical part of cell and basal part of cell. Biomarker of hypothyroidism. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 9. Orthologous to human OTOF (otoferlin); PARTICIPATES IN auditory mechanotransduction pathway; INTERACTS WITH 6-propyl-2-thiouracil; ammonium chloride; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

fer-1-like protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OTOF (otoferlin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Otof (otoferlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Otof (otoferlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OTOF (otoferlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	OTOF (otoferlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Otof (otoferlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	OTOF (otoferlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	OTOF (otoferlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Otof (otoferlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Otof (otoferlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	OTOF (otoferlin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	OTOF (otoferlin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Otof (otoferlin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	otofa (otoferlin a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	otofa (otoferlin a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	otofb (otoferlin b)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	fer-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mfr	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mfr	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	otof	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	31,647,869 - 31,744,476 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	31,647,914 - 31,744,476 (+)	Ensembl				GRCr8
mRatBN7.2	6	25,928,018 - 26,024,631 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	25,928,055 - 26,024,631 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	26,220,691 - 26,317,263 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	26,536,572 - 26,633,146 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	26,015,517 - 26,112,617 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	27,328,343 - 27,424,864 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	27,328,406 - 27,424,864 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	37,140,727 - 37,237,155 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	25,912,607 - 26,008,137 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	25,406,310 - 25,502,501 (+)	NCBI		Celera
RGSC_v3.1	6	26,003,001 - 26,007,276 (+)	NCBI
Cytogenetic Map	6	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Arthrogryposis and Ectodermal Dysplasia (ISO)

Auditory Neuropathy (ISO)

autosomal recessive nonsyndromic deafness (ISO)

autosomal recessive nonsyndromic deafness 3 (ISO)

autosomal recessive nonsyndromic deafness 9 (ISO,ISS)

COVID-19 (ISO)

Deafness (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

hypothyroidism (IEP)

nonsyndromic deafness (ISO)

Pendred syndrome (ISO)

sensorineural hearing loss (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylparaben (ISO)

cadmium dichloride (ISO)

cholesterol (ISO)

cisplatin (ISO)

cocaine (EXP)

diazinon (ISO)

disodium selenite (ISO)

ethanol (ISO)

ethylparaben (ISO)

gentamycin (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methylparaben (ISO)

N-ethyl-N-nitrosourea (ISO)

okadaic acid (ISO)

paracetamol (ISO)

rotenone (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cochlea development (IEP)

plasma membrane organization (IBA)

response to auditory stimulus (IBA)

sensory perception of sound (IBA,IEA)

synaptic vesicle exocytosis (ISO,ISS)

synaptic vesicle priming (IBA,ISO)

synaptic vesicle recycling (IBA)

Cellular Component

apical part of cell (IDA)

basal part of cell (IDA)

basolateral plasma membrane (IEA)

cochlear hair cell ribbon synapse (ISO)

cytoplasmic vesicle (IEA)

endoplasmic reticulum (ISO)

endoplasmic reticulum membrane (IEA)

Golgi membrane (IEA)

membrane (IEA)

plasma membrane (IEA)

presynaptic active zone membrane (IBA,ISO)

presynaptic membrane (IEA)

synaptic vesicle membrane (IBA,IEA,ISO,ISS)

trans-Golgi network (ISO,ISS)

Molecular Function

AP-2 adaptor complex binding (IBA,ISO)

calcium ion binding (IBA,ISO,ISS)

metal ion binding (IEA)

protein binding (IPI,ISO)

protein-containing complex binding (IPI)

Molecular Pathway Annotations Click to see Annotation Detail View

auditory mechanotransduction pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Thyroid hormone deficiency affects postnatal spiking activity and expression of Ca2+ and K+ channels in rodent inner hair cells.	Brandt N, etal., J Neurosci. 2007 Mar 21;27(12):3174-86.
2.	Otoferlin couples to clathrin-mediated endocytosis in mature cochlear inner hair cells.	Duncker SV, etal., J Neurosci. 2013 May 29;33(22):9508-19. doi: 10.1523/JNEUROSCI.5689-12.2013.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rab8b GTPase, a protein transport regulator, is an interacting partner of otoferlin, defective in a human autosomal recessive deafness form.	Heidrych P, etal., Hum Mol Genet. 2008 Dec 1;17(23):3814-21. doi: 10.1093/hmg/ddn279. Epub 2008 Sep 4.
5.	A missense mutation in the conserved C2B domain of otoferlin causes deafness in a new mouse model of DFNB9.	Longo-Guess C, etal., Hear Res. 2007 Dec;234(1-2):21-8. Epub 2007 Sep 29.
6.	Screening of OTOF mutations in Iran: a novel mutation and review.	Mahdieh N, etal., Int J Pediatr Otorhinolaryngol. 2012 Nov;76(11):1610-5. doi: 10.1016/j.ijporl.2012.07.030. Epub 2012 Aug 18.
7.	Temperature-sensitive auditory neuropathy associated with an otoferlin mutation: Deafening fever!	Marlin S, etal., Biochem Biophys Res Commun. 2010 Apr 9;394(3):737-42. doi: 10.1016/j.bbrc.2010.03.062. Epub 2010 Mar 16.
8.	A prevalent founder mutation and genotype-phenotype correlations of OTOF in Japanese patients with auditory neuropathy.	Matsunaga T, etal., Clin Genet. 2012 Nov;82(5):425-32. doi: 10.1111/j.1399-0004.2012.01897.x. Epub 2012 Jun 1.
9.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
10.	Q829X, a novel mutation in the gene encoding otoferlin (OTOF), is frequently found in Spanish patients with prelingual non-syndromic hearing loss.	Migliosi V, etal., J Med Genet. 2002 Jul;39(7):502-6.
11.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
12.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
13.	Online Mendelian Inheritance in Man, OMIM (TM).	Online Mendelian Inheritance in Man, OMIM (TM).
14.	GOA pipeline	RGD automated data pipeline
15.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
17.	Comprehensive gene review and curation	RGD comprehensive gene curation
18.	Auditory neuropathy in patients carrying mutations in the otoferlin gene (OTOF).	Rodriguez-Ballesteros M, etal., Hum Mutat. 2003 Dec;22(6):451-6.
19.	Otoferlin, defective in a human deafness form, is essential for exocytosis at the auditory ribbon synapse.	Roux I, etal., Cell. 2006 Oct 20;127(2):277-89.
20.	The auditory hair cell ribbon synapse: from assembly to function.	Safieddine S, etal., Annu Rev Neurosci. 2012;35:509-28. doi: 10.1146/annurev-neuro-061010-113705.
21.	Differential expression of otoferlin in brain, vestibular system, immature and mature cochlea of the rat.	Schug N, etal., Eur J Neurosci. 2006 Dec;24(12):3372-80.
22.	A novel missense mutation in a C2 domain of OTOF results in autosomal recessive auditory neuropathy.	Tekin M, etal., Am J Med Genet A. 2005 Sep 15;138(1):6-10.
23.	OTOF encodes multiple long and short isoforms: genetic evidence that the long ones underlie recessive deafness DFNB9.	Yasunaga S, etal., Am J Hum Genet 2000 Sep;67(3):591-600. Epub 2000 Jul 19.
24.	A mutation in OTOF, encoding otoferlin, a FER-1-like protein, causes DFNB9, a nonsyndromic form of deafness.	Yasunaga S, etal., Nat Genet. 1999 Apr;21(4):363-9.

Additional References at PubMed

PMID:15632090	PMID:18287496	PMID:20562868	PMID:21216247	PMID:24478316	PMID:25609709	PMID:25701657	PMID:27458190

Genomics

Comparative Map Data

Otof
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	31,647,869 - 31,744,476 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	31,647,914 - 31,744,476 (+)	Ensembl				GRCr8
mRatBN7.2	6	25,928,018 - 26,024,631 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	25,928,055 - 26,024,631 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	26,220,691 - 26,317,263 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	26,536,572 - 26,633,146 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	26,015,517 - 26,112,617 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	27,328,343 - 27,424,864 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	27,328,406 - 27,424,864 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	37,140,727 - 37,237,155 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	25,912,607 - 26,008,137 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	25,406,310 - 25,502,501 (+)	NCBI		Celera
RGSC_v3.1	6	26,003,001 - 26,007,276 (+)	NCBI
Cytogenetic Map	6	q14	NCBI

OTOF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	26,457,203 - 26,558,756 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	26,457,203 - 26,558,756 (-)	Ensembl			hg38	GRCh38
GRCh37	2	26,680,071 - 26,781,624 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	26,533,575 - 26,635,070 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	26,591,722 - 26,612,561	NCBI
Celera	2	26,523,620 - 26,625,188 (-)	NCBI		Celera
Cytogenetic Map	2	p23.3	NCBI
HuRef	2	26,419,277 - 26,520,993 (-)	NCBI		HuRef
CHM1_1	2	26,610,235 - 26,711,604 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	26,495,826 - 26,597,899 (-)	NCBI		T2T-CHM13v2.0

Otof
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	30,524,410 - 30,620,073 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	30,524,406 - 30,619,276 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	30,367,066 - 30,462,730 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	30,367,062 - 30,461,932 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	30,669,351 - 30,764,305 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	30,646,656 - 30,738,483 (-)	NCBI		MGSCv36	mm8
Celera	5	27,843,111 - 27,940,114 (-)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI
cM Map	5	16.48	NCBI

Otof
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	8,481,231 - 8,569,265 (-)	Ensembl
ChiLan1.0	NW_004955469	8,480,099 - 8,569,215 (-)	NCBI	ChiLan1.0	ChiLan1.0

OTOF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	99,958,484 - 100,060,125 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	99,962,451 - 100,064,093 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	26,454,010 - 26,555,642 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	26,548,972 - 26,566,606 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	26,546,959 - 26,647,278 (-)	Ensembl			panPan2	panpan1.1

OTOF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	20,518,480 - 20,619,713 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	20,518,813 - 20,614,750 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	20,413,288 - 20,519,116 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	20,840,616 - 21,054,235 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	20,841,059 - 20,936,337 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	20,527,360 - 20,741,118 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	20,538,522 - 20,752,482 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	20,584,774 - 20,680,568 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Otof
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	64,839,059 - 64,923,648 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	5,916,113 - 5,999,784 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	5,916,113 - 5,999,867 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OTOF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	112,478,027 - 112,581,104 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	112,478,188 - 112,581,105 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	119,511,861 - 119,546,848 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OTOF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	81,080,077 - 81,187,769 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	81,080,462 - 81,186,697 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	30,964,395 - 31,067,698 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Otof
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624738	8,599,544 - 8,690,412 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624738	8,599,815 - 8,690,382 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Otof
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	23,620,737 - 23,716,522 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Otof
320 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	63
Count of miRNA genes:	57
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000044278
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1975879	46975879	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	20097635	65097635	Rat
8552910	Pigfal5	Plasma insulin-like growth factor 1 level QTL 5	4.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	22653889	67653889	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	20097635	65097635	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	3239989	48239989	Rat
1331779	Rf38	Renal function QTL 38	2.876		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	31185002	76185002	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1975879	46975879	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1975879	46975879	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	44788383	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1975879	46975879	Rat
2292616	Ept15	Estrogen-induced pituitary tumorigenesis QTL 15	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	1	44788383	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1975879	46975879	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	26618314	86868070	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2301964	Bp323	Blood pressure QTL 323	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	86868070	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	3239989	48239989	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	3239989	48239989	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	26618314	86868070	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	1	40163351	Rat
1641898	Colcr4	Colorectal carcinoma resistance QTL4	3.71	0.0007	intestine integrity trait (VT:0010554)	well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)	6	30937632	75937632	Rat
70199	Coreg1	Compensatory renal growth QTL 1	11.8		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	6	14599473	63457687	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	16089372	61967788	Rat
1358190	Ept1	Estrogen-induced pituitary tumorigenesis QTL 1	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	1	44788383	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	3239989	48239989	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	22288257	32981219	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	22288257	67288257	Rat

Markers in Region

D6Got19

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	25,988,506 - 25,988,661 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	27,388,742 - 27,388,896	NCBI	Rnor6.0
Rnor_5.0	6	37,201,033 - 37,201,187	UniSTS	Rnor5.0
RGSC_v3.4	6	25,972,823 - 25,972,978	RGD	RGSC3.4
RGSC_v3.4	6	25,972,824 - 25,972,978	UniSTS	RGSC3.4
Celera	6	25,466,376 - 25,466,530	UniSTS
RGSC_v3.1	6	25,975,777 - 25,975,931	RGD
RH 3.4 Map	6	94.9	UniSTS
RH 3.4 Map	6	94.9	RGD
RH 2.0 Map	6	226.2	RGD
Cytogenetic Map	6	q14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
8	4	14	124	36	36	13	9	13	6	83	51	9	96	7	53	23	8	8

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001276720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039113005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039113006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF315944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000044278 ⟹ ENSRNOP00000046997

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	31,647,914 - 31,743,667 (+)	Ensembl
mRatBN7.2 Ensembl	6	25,928,055 - 26,023,822 (+)	Ensembl
Rnor_6.0 Ensembl	6	27,328,515 - 27,424,052 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091159 ⟹ ENSRNOP00000074490

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	31,647,914 - 31,744,476 (+)	Ensembl
mRatBN7.2 Ensembl	6	25,928,055 - 26,024,631 (+)	Ensembl
Rnor_6.0 Ensembl	6	27,328,406 - 27,424,864 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105491 ⟹ ENSRNOP00000078196

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	31,647,914 - 31,744,476 (+)	Ensembl
mRatBN7.2 Ensembl	6	25,928,055 - 26,024,631 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000124771 ⟹ ENSRNOP00000110964

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	31,647,914 - 31,744,476 (+)	Ensembl

RefSeq Acc Id:

NM_001276720 ⟹ NP_001263649

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,647,914 - 31,744,476 (+)	NCBI
mRatBN7.2	6	25,928,055 - 26,024,631 (+)	NCBI
Rnor_6.0	6	27,328,406 - 27,424,864 (+)	NCBI
Rnor_5.0	6	37,140,727 - 37,237,155 (+)	NCBI
Celera	6	25,406,310 - 25,502,501 (+)	NCBI

Sequence:

show sequence

GCAGGAGGAGGAGGCGGCAGCAGCCAGAGAAGAGGGAGGCGTGTGAACCACGCTCCGCCAGCAA
GCTTCTTCCCGCTGCTCTGGCACTACCCAGGTTCTCTCCGCCAGTATGGCCCTGATCGTCCACC
TCAAGACTGTTTCTGAGCTTCGAGGCAGAGCTGATCGGATCGCCAAAGTCACTTTCCGAGGACA
GTCCTTCTATTCCCGGGTCCTGGAGAACTGCGAGGATGTGGCTGACTTCGATGAGACATTCCGG
TGGCCAGTGGCTAGCAGCATCGACAGGAATGAAGTGTTGGAGATTCAGATTTTCAACTACAGCA
AAGTCTTCAGCAACAAACTAATCGGGACCTTCCGCATGGTGCTGCAGAAGGTGGTGGAGGAGAA
TCGGGTAGAGGTGTCTGACACGCTGATCGATGACAACAATGCTATCATCAAGACCAGCCTAAGC
ATGGAGGTCCGGTATCAAGCCGCAGATGGCACAGTAGGCCCTTGGGATGATGGAGACTTTCTGG
GAGATGAATCCCTTCAGGAGGAAGAGAAAGACAGCCAGGAGACAGATGGTCTGCTACCTGGCTC
CCGACCCAGCACCCGGACACCCGGCGAGAAGAGCTTTCGAAGAGCGGGAAGGAGTGTATTCTCG
GCCATGAAACTCGGCAAGACTCGGTCCCACAAAGAGGAGCCCCAAAGACAAGATGAGCCAGCGG
TGCTGGAGATGGAGGACCTGGACCACCTAGCCATCCGGCTGGGGGATGGGCTGGATCCTGACTC
AGTGTCTCTAGCCTCGGTCACTGCTCTCACCAGCAATGTCTCCAACAAACGGTCTAAGCCAGAT
ATTAAAATGGAACCGAGTGCTGGGAGACCCATGGATTACCAGGTCAGCATCACAGTGATTGAGG
CTCGGCAGCTGGTGGGTTTGAACATGGACCCCGTGGTGTGCGTGGAGGTGGGCGATGACAAAAA
ATACACATCCATGAAGGAGTCCACAAACTGCCCTTACTACAACGAGTACTTCGTCTTTGACTTC
CACGTCTCTCCTGATGTCATGTTTGACAAGATCATCAAGATCTCGGTTATCCATTCTAAGAACC
TGCTTCGAAGCGGCACTCTGGTGGGCTCCTTCAAAATGGATGTGGGGACCGTGTACTCCCAGCC
TGAACACCAGTTCCATCACAAATGGGCTATCCTGTCAGACCCCGATGACATCTCTGCCGGGCTG
AAGGGCTATGTAAAGTGTGATGTCGCCGTGGTGGGCAAGGGAGACAACATCAAGACACCCCACA
AGGCCAACGAGACAGATGAGGATGACATTGAAGGGAACTTGCTGCTCCCCGAGGGCGTGCCCCC
AGAACGGCAGTGGGCCCGGTTCTACGTGAAAATTTACCGAGCAGAGGGACTGCCCCGGATGAAC
ACAAGCCTCATGGCCAACGTAAAGAAGGCGTTCATCGGTGAGAACAAGGACCTCGTCGACCCCT
ACGTTCAAGTCTTCTTTGCTGGACAGAAGGGCAAAACATCAGTGCAGAAGAGCAGCTATGAGCC
GCTGTGGAATGAGCAGGTCGTCTTTACAGATCTGTTCCCCCCACTCTGCAAGCGCATGAAGGTG
CAGATCCGAGACTCCGACAAGGTCAACGACGTGGCCATCGGCACCCACTTCATCGACCTGCGCA
AGATTTCCAACGATGGAGACAAAGGCTTCCTGCCTACGCTCGGCCCAGCCTGGGTGAACATGTA
CGGCTCCACACGCAACTACACGCTGCTGGACGAGCACCAGGACCTGAATGAGGGCCTGGGTGAG
GGGGTGTCCTTCCGTGCCCGCCTCATGTTGGGACTGGCTGTGGAGATCCTAGACACCTCCAACC
CAGAGCTCACCAGCTCCACCGAGGTGCAGGTGGAGCAGGCCACACCTGTCTCAGAGAGCTGCAC
AGGGAGAATGGAAGAATTTTTCCTATTTGGAGCCTTCCTGGAAGCCTCAATGATCGACCGGAAA
AATGGGGACAAGCCAGTGACCTTTGAGGTGACCATAGGAAACTATGGCAATGAAGTCGATGGTA
CATCCCGGCCCCAGAGGCCTCGGCCCCGGAAGGAACCTGGGGATGAAGAAGAGGTAGACCTGAT
TCAGAACTCCAGTGACGACGAGGGTGATGAAGCCGGGGACCTGGCCTCAGTGTCCTCCACCCCA
CCTATGAGGCCCCAGATCACAGACAGGAACTATTTCCACCTGCCCTACCTAGAGCGCAAGCCCT
GCATCTACATCAAGAGCTGGTGGCCTGACCAGCGGCGCCGTCTCTACAACGCAAACATCATGGA
CCACATTGCTGACAAGCTGGAAGAAGGTCTGAATGATGTCCAGGAGATGATCAAAACGGAGAAG
TCCTACCCGGAGCGACGCCTGCGGGGTGTGCTAGAGGAACTCAGCTGTGGCTGCCACCGCTTCC
TCTCCCTCTCGGACAAGGACCAGGGTCACTCGTCCCGCACCAGGCTGGATCGGGAGCGCCTCAA
ATCCTGTATGAGGGAGCTGGAGAGCATGGGACAACAAGCCAAGAGCCTGAGGGCTCAGGTGAAG
CGACACACTGTACGGGACAAGCTGAGGTTATGCCAGAACTTCCTGCAGAAGCTACGCTTCCTAG
CTGATGAGCCCCAGCACAGCATCCCCGATGTGTTCATTTGGATGATGAGTAATAACAAACGTAT
CGCCTACGCCCGCGTGCCTTCCAAAGACCTTTTGTTCTCCATTGTGGAGGAGGAATTGGGCAAG
GACTGCGCCAAGGTCAAGACCCTCTTCCTGAAGCTGCCAGGAAAGAGGGGCTTCGGCTCGGCAG
GCTGGACAGTACAGGCCAAGCTGGAACTCTACCTGTGGCTGGGCCTCAGCAAGCAGAGAAAGGA
CTTCCTGTGTGGCCTGCCTTGTGGCTTCGAGGAGGTCAAGGCAGCCCAAGGCCTGGGTCTGCAT
TCCTTTCCGCCCATCAGCCTTGTCTACACCAAGAAGCAAACCTTCCAGCTCCGAGCCCACATGT
ATCAGGCCCGAAGCCTCTTCGCCGCTGACAGCACTGGGCTCTCTGATCCTTTTGCCCGAGTCTT
CTTCATCAACCAGAGCCAGTGCACGGAGGTCCTAAACGAGACACTGTGTCCTACTTGGGACCAA
ATGCTGGTATTTGACAACCTGGAGCTGTACGGTGAAGCTCATGAGTTACGAGATGATCCCCCCA
TCATTGTCATTGAAATCTACGACCAGGACAGCATGGGCAAAGCTGACTTCATGGGCCGGACCTT
TGCCAAGCCCCTGGTGAAGATGGCAGACGAGGCATATTGCCCGCCTCGCTTCCCGCCCCAGCTT
GAGTACTACCAGATCTACCGAGGCAACGCCACGGCCGGAGACCTACTGGCTGCCTTTGAGCTGC
TGCAGATTGGACCATCGGGGAAGGCTGACCTGCCACCCATCAATGGCCCAGTGGACATGGACAG
AGGGCCCATCATGCCTGTGCCTGTGGGAATCCGGCCCGTGCTCAGCAAGTACAGAGTGGAGGTG
CTGTTCTGGGGCCTGAGGGACTTAAAGAGGGTGAACCTGGCCCAGGTGGACCGGCCACGGGTGG
ACATCGAGTGTGCGGGAAAAGGGGTACAATCGTCCCTGATCCACAATTATAAGAAGAACCCCAA
CTTCAACACCCTGGTCAAGTGGTTTGAAGTGGACCTCCCAGAGAATGAGCTCCTGCACCCACCC
TTGAACATCCGGGTGGTGGACTGCCGGGCCTTTGGACGATACACCCTGGTGGGCTCCCATGCAG
TCAGCTCACTACGACGCTTCATCTACCGACCCCCGGACCGCTCGGCCGCCAACTGGAACACCAC
AGTCAGGCTTCTCCGGGGCTACCACATGCTGTGCAATGGGGGCCCCTCTTCTTGCCCCACAGGG
GAGGTTGTAGTGAGCATGGAACCTGAAGTGCCAGTTAAGAAGCTGGAGACCCTGGTGAAGCTGG
ATGCGACTTCTGATGCTGTGGTCAAGGTGGATGTGGCTGAAGATGAGAAGGAAAGGAAGAAGAA
GAAAAAGAAAGGCCCATCAGAGGAGGCAGAGGAGGAGGAACCCGATGAGAGCATGCTGGATTGG
TGGTCCAAGTACTTTGCCTCCATTGACACAATGAAGGAGCAACTTCGACAACATGAGACCTCTG
GGATTGATTTGGAAGAGAAGGAAGAAATGGATAGCACTGAGGGCCTGAAGGGGCCAGTGAAGAA
CAAGGAGAAGTCCAGAGCTGCAAAGGAGGAAAAAAAGAAGAAAAATCAGAACCCTGGCCCTGGC
CAGGGATCGGAGGCTCCTGAGAAGAAGAAAGCCAAGATCGACGAGCTTAAGGTGTATCCCAAGG
AGCTAGAGTCGGAGTTTGACAACTTTGAGGACTGGCTGCACACGTTCAACCTGTTACGGGGCAA
GACTGGGGATGATGAGGATGGCTCCACAGAGGAAGAACGCATAGTAGGCCGATTCAAGGGTTCC
CTCTGTGTGTACAAAGTGCCACTCCCGGAGGATGTGTCTCGTGAAGCTGGCTACGATCCCACCT
ACGGAATGTTCCAGGGCATCCCAAGCAATGACCCCATTAATGTGCTGGTCCGAATCTATGTGGT
CCGGGCCACAGACCTGCACCCGGCTGACATCAATGGCAAAGCCGACCCCTATATCGCCATCAAG
TTAGGCAAGACTGACATCCGAGACAAGGAGAACTACATCTCCAAGCAGCTCAACCCTGTCTTTG
GAAAGTCCTTTGACATTGAGGCCTCCTTCCCCATGGAGTCCATGCTGACAGTGGCTGTGTACGA
CTGGGATCTGGTGGGCACTGATGACCTCATCGGAGAAACCAAGATCGACCTGGAAAACCGCTTC
TACAGCAAGCACCGTGCTACCTGCGGCATCGCGCAGACCTATTCCATACATGGCTATAATATCT
GGAGAGACCCCATGAAGCCCAGCCAGATCCTGACCCGCCTCTGCAAAGAGGGCAAAGTGGACGG
CCCCCACTTTGGTCCCCATGGGAGAGTGAAGGTCGCCAACCGTGTCTTCACAGGGCCTTCAGAG
ATAGAGGATGAGAATGGTCAGAGGAAGCCCACAGATGAGCACGTGGCACTGTCTGCTCTGAGAC
ACTGGGAGGACATCCCCCGGGTGGGCTGCCGCCTTGTACCGGAGCACGTGGAGACCAGGCCGTT
GCTCAACCCTGACAAGCCAGGCATTGAGCAGGGCCGCCTGGAGCTGTGGGTGGATATGTTCCCC
ATGGATATGCCGGCCCCTGGAACACCTCTGGATATCTCCCCCAGGAAACCCAAGAAGTATGAGC
TGCGCGTCATCGTGTGGAACACAGATGAGGTGGTCCTGGAAGACGACGATTTCTTCACGGGAGA
GAAGTCCAGTGATATTTTTGTGAGGGGGTGGCTGAAGGGCCAGCAGGAGGACAAACAGGACACA
GACGTACATTATCACTCCCTCACGGGTGAGGGCAACTTCAACTGGCGATACCTGTTCCCCTTCG
ACTACCTGGCGGCCGAAGAGAAGATCGTTATGTCCAAGAAGGAGTCCATGTTCTCCTGGGATGA
GACGGAGTACAAGATACCTGCGCGGCTCACCCTGCAGATCTGGGACGCTGACCACTTCTCAGCC
GATGACTTCCTGGGGGCCATCGAGCTGGACCTGAACCGGTTCCCGAGGGGCGCCAAGACAGCCA
AGCAGTGCACCATGGAGATGGCCACCGGGGAGGTGGATGTGCCCCTGGTTTCCATCTTTAAACA
GAAACGTGTCAAAGGCTGGTGGCCCCTCCTGGCCCGCAATGAGAATGATGAATTTGAACTCACG
GGCAAAGTAGAGGCAGAGTTACACCTCCTCACGGCAGAGGAGGCGGAGAAGAACCCGGTGGGCC
TGGCTCGCAATGAACCTGACCCTCTAGAAAAACCCAATCGGCCCGACACAAGCTTCATCTGGTT
CTTGAACCCTCTCAAGTCTGCCCGCTACTTCCTGTGGCATACCTACCGCTGGCTGCTCCTCAAA
CTCCTGCTGCTCCTCCTCCTGCTGCTGCTGCTCGCCCTGTTTCTCTACTCTCTGCCTGGCTACC
TGGCCAAGAAGATCCTTGGGGCCTGAGCCCTGCAGCCGCCTGGGTCTGCCGACCCGACACGGCG
TTCGTCTGGTTCCTGAACCCACTCAAATCTATCAAGTACCTCATTTGCACCCGGTACAAGTGGC
TTATCATCAAGATTGTGCTGGCCCTGCTTGGGCTGCTCATGCTGGCCCTCTTCCTCTATAGCCT
CCCAGGCTACATGGTCAAGAAGCTCCTAGGGGCATGAAGCGTGCCCACCCTAGCCCGCCCCAGC
CCGCCCCAGCATCCCTCCAGGGGCTGCTGCGTTTGCCTTCCCTCACCTGGACTCTCTCCCAGCT
CCCTGCGGAACCGACCACGCCTGGCAGCCTTGAGCAAGACGCTTGCTGGGCTTCCATCCCCACC
CCATCCCCAAAGTGCTGCTTGCCTGAACTAGTCCCATGCCTGCCTGGGGTTTGGGGTACAGCTG
ACCTTCAGAACCAGATACTCTCTCGCCCCACTTTCTAAGGTACCAAGTTCCTCTGCCCAGCCCC
AAGAGTGGTAGTGGCCCAACCCTCCCTTGTGCTCTCCAAATCGTGTGTTAAGGCTCCAGTGAAA
TGAACCAAGGAACATGGGGCAGTGTCCAAGGCTCCGATAAGTAGGAACACGTGTAAAGCACCAG
AAATGCCAGCAGAGGCAGCACATCACTCTACAAAGCATCCTGACCAAGATGGCAGCGGTGGCCA
GCTGCTCCTGCGCATGCTCTCCTCTTGGCTCCCCCTCCCCCCACAGCCACTTGGCCACGTAGCA
TCAGGCTCCTATCACCAGGGATGCCTCTGCCTCGGCCAGCCCAGCGCGTGCCAGCTAGTATGCA
AGCTCCAAGAGTAAATCGGGTGTCCTTAGCCGCCCTGAATACTGCCCTGTCCTGCCTGCCGACG
GCCACACCCGAGTGTACGCTGAGTGCTGCCCTCCTGCCTCTGCGGGTCTGCTGGCTGCTTTTCT
TGAGTGTGATTTTTTCTCTCTCTCTCTCCCTCTCTCTCGCTCAATAAAATAAACTCTGAGACAG
AAGTGGAGCAGAAA

hide sequence

RefSeq Acc Id:

XM_006239833 ⟹ XP_006239895

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,647,890 - 31,744,464 (+)	NCBI
mRatBN7.2	6	25,928,020 - 26,024,631 (+)	NCBI
Rnor_6.0	6	27,328,343 - 27,424,864 (+)	NCBI
Rnor_5.0	6	37,140,727 - 37,237,155 (+)	NCBI

Sequence:

show sequence

GGCTGCACGGCTCTGATGAGCTGAAGGAGCAGCTTGCTTTGGTTGCCTTGGTCTCTGTGGGCAG
CAGGAGGAGGAGGCGGCAGCAGCCAGAGAAGAGGGAGGCGTGTGAACCACGCTCCGCCAGCAAG
CTTCTTCCCGCTGCTCTGGCACTACCCAGGTTCTCTCCGCCAGTATGGCCCTGATCGTCCACCT
CAAGACTGTTTCTGAGCTTCGAGGCAGAGCTGATCGGATCGCCAAAGTCACTTTCCGAGGACAG
TCCTTCTATTCCCGGGTCCTGGAGAACTGCGAGGATGTGGCTGACTTCGATGAGACATTCCGGT
GGCCAGTGGCTAGCAGCATCGACAGGAATGAAGTGTTGGAGATTCAGATTTTCAACTACAGCAA
AGTCTTCAGCAACAAACTAATCGGGACCTTCCGCATGGTGCTGCAGAAGGTGGTGGAGGAGAAT
CGGGTAGAGGTGTCTGACACGCTGATCGATGACAACAATGCTATCATCAAGACCAGCCTAAGCA
TGGAGGTCCGGTATCAAGCCGCAGATGGCACAGTAGGCCCTTGGGATGATGGAGACTTTCTGGG
AGATGAATCCCTTCAGGAGGAAGAGAAAGACAGCCAGGAGACAGATGGTCTGCTACCTGGCTCC
CGACCCAGCACCCGGACACCCGGCGAGAAGAGCTTTCGAAGCAAAGGCAAAGAGAAGACCAAGG
GAGGCAGAGATGGCGAGCACAAAGCGGGAAGGAGTGTATTCTCGGCCATGAAACTCGGCAAGAC
TCGGTCCCACAAAGAGGAGCCCCAAAGACAAGATGAGCCAGCGGTGCTGGAGATGGAGGACCTG
GACCACCTAGCCATCCGGCTGGGGGATGGGCTGGATCCTGACTCAGTGTCTCTAGCCTCGGTCA
CTGCTCTCACCAGCAATGTCTCCAACAAACGGTCTAAGCCAGATATTAAAATGGAACCGAGTGC
TGGGAGACCCATGGATTACCAGGTCAGCATCACAGTGATTGAGGCTCGGCAGCTGGTGGGTTTG
AACATGGACCCCGTGGTGTGCGTGGAGGTGGGCGATGACAAAAAATACACATCCATGAAGGAGT
CCACAAACTGCCCTTACTACAACGAGTACTTCGTCTTTGACTTCCACGTCTCTCCTGATGTCAT
GTTTGACAAGATCATCAAGATCTCGGTTATCCATTCTAAGAACCTGCTTCGAAGCGGCACTCTG
GTGGGCTCCTTCAAAATGGATGTGGGGACCGTGTACTCCCAGCCTGAACACCAGTTCCATCACA
AATGGGCTATCCTGTCAGACCCCGATGACATCTCTGCCGGGCTGAAGGGCTATGTAAAGTGTGA
TGTCGCCGTGGTGGGCAAGGGAGACAACATCAAGACACCCCACAAGGCCAACGAGACAGATGAG
GATGACATTGAAGGGAACTTGCTGCTCCCCGAGGGCGTGCCCCCAGAACGGCAGTGGGCCCGGT
TCTACGTGAAAATTTACCGAGCAGAGGGACTGCCCCGGATGAACACAAGCCTCATGGCCAACGT
AAAGAAGGCGTTCATCGGTGAGAACAAGGACCTCGTCGACCCCTACGTTCAAGTCTTCTTTGCT
GGACAGAAGGGCAAAACATCAGTGCAGAAGAGCAGCTATGAGCCGCTGTGGAATGAGCAGGTCG
TCTTTACAGATCTGTTCCCCCCACTCTGCAAGCGCATGAAGGTGCAGATCCGAGACTCCGACAA
GGTCAACGACGTGGCCATCGGCACCCACTTCATCGACCTGCGCAAGATTTCCAACGATGGAGAC
AAAGGCTTCCTGCCTACGCTCGGCCCAGCCTGGGTGAACATGTACGGCTCCACACGCAACTACA
CGCTGCTGGACGAGCACCAGGACCTGAATGAGGGCCTGGGTGAGGGGGTGTCCTTCCGTGCCCG
CCTCATGTTGGGACTGGCTGTGGAGATCCTAGACACCTCCAACCCAGAGCTCACCAGCTCCACC
GAGGTGCAGGTGGAGCAGGCCACACCTGTCTCAGAGAGCTGCACAGGGAGAATGGAAGAATTTT
TCCTATTTGGAGCCTTCCTGGAAGCCTCAATGATCGACCGGAAAAATGGGGACAAGCCAGTGAC
CTTTGAGGTGACCATAGGAAACTATGGCAATGAAGTCGATGGTACATCCCGGCCCCAGAGGCCT
CGGCCCCGGAAGGAACCTGGGGATGAAGAAGAGGTAGACCTGATTCAGAACTCCAGTGACGACG
AGGGTGATGAAGCCGGGGACCTGGCCTCAGTGTCCTCCACCCCACCTATGAGGCCCCAGATCAC
AGACAGGAACTATTTCCACCTGCCCTACCTAGAGCGCAAGCCCTGCATCTACATCAAGAGCTGG
TGGCCTGACCAGCGGCGCCGTCTCTACAACGCAAACATCATGGACCACATTGCTGACAAGCTGG
AAGAAGGTCTGAATGATGTCCAGGAGATGATCAAAACGGAGAAGTCCTACCCGGAGCGACGCCT
GCGGGGTGTGCTAGAGGAACTCAGCTGTGGCTGCCACCGCTTCCTCTCCCTCTCGGACAAGGAC
CAGGGTCACTCGTCCCGCACCAGGCTGGATCGGGAGCGCCTCAAATCCTGTATGAGGGAGCTGG
AGAGCATGGGACAACAAGCCAAGAGCCTGAGGGCTCAGGTGAAGCGACACACTGTACGGGACAA
GCTGAGGTTATGCCAGAACTTCCTGCAGAAGCTACGCTTCCTAGCTGATGAGCCCCAGCACAGC
ATCCCCGATGTGTTCATTTGGATGATGAGTAATAACAAACGTATCGCCTACGCCCGCGTGCCTT
CCAAAGACCTTTTGTTCTCCATTGTGGAGGAGGAATTGGGCAAGGACTGCGCCAAGGTCAAGAC
CCTCTTCCTGAAGCTGCCAGGAAAGAGGGGCTTCGGCTCGGCAGGCTGGACAGTACAGGCCAAG
CTGGAACTCTACCTGTGGCTGGGCCTCAGCAAGCAGAGAAAGGACTTCCTGTGTGGCCTGCCTT
GTGGCTTCGAGGAGGTCAAGGCAGCCCAAGGCCTGGGTCTGCATTCCTTTCCGCCCATCAGCCT
TGTCTACACCAAGAAGCAAACCTTCCAGCTCCGAGCCCACATGTATCAGGCCCGAAGCCTCTTC
GCCGCTGACAGCACTGGGCTCTCTGATCCTTTTGCCCGAGTCTTCTTCATCAACCAGAGCCAGT
GCACGGAGGTCCTAAACGAGACACTGTGTCCTACTTGGGACCAAATGCTGGTATTTGACAACCT
GGAGCTGTACGGTGAAGCTCATGAGTTACGAGATGATCCCCCCATCATTGTCATTGAAATCTAC
GACCAGGACAGCATGGGCAAAGCTGACTTCATGGGCCGGACCTTTGCCAAGCCCCTGGTGAAGA
TGGCAGACGAGGCATATTGCCCGCCTCGCTTCCCGCCCCAGCTTGAGTACTACCAGATCTACCG
AGGCAACGCCACGGCCGGAGACCTACTGGCTGCCTTTGAGCTGCTGCAGATTGGACCATCGGGG
AAGGCTGACCTGCCACCCATCAATGGCCCAGTGGACATGGACAGAGGGCCCATCATGCCTGTGC
CTGTGGGAATCCGGCCCGTGCTCAGCAAGTACAGAGTGGAGGTGCTGTTCTGGGGCCTGAGGGA
CTTAAAGAGGGTGAACCTGGCCCAGGTGGACCGGCCACGGGTGGACATCGAGTGTGCGGGAAAA
GGGGTACAATCGTCCCTGATCCACAATTATAAGAAGAACCCCAACTTCAACACCCTGGTCAAGT
GGTTTGAAGTGGACCTCCCAGAGAATGAGCTCCTGCACCCACCCTTGAACATCCGGGTGGTGGA
CTGCCGGGCCTTTGGACGATACACCCTGGTGGGCTCCCATGCAGTCAGCTCACTACGACGCTTC
ATCTACCGACCCCCGGACCGCTCGGCCGCCAACTGGAACACCACAGGGGAGGTTGTAGTGAGCA
TGGAACCTGAAGTGCCAGTTAAGAAGCTGGAGACCCTGGTGAAGCTGGATGCGACTTCTGATGC
TGTGGTCAAGGTGGATGTGGCTGAAGATGAGAAGGAAAGGAAGAAGAAGAAAAAGAAAGGCCCA
TCAGAGGAGGCAGAGGAGGAGGAACCCGATGAGAGCATGCTGGATTGGTGGTCCAAGTACTTTG
CCTCCATTGACACAATGAAGGAGCAACTTCGACAACATGAGACCTCTGGGATTGATTTGGAAGA
GAAGGAAGAAATGGATAGCACTGAGGGCCTGAAGGGGCCAGTGAAGAACAAGGAGAAGTCCAGA
GCTGCAAAGGAGGAAAAAAAGAAGAAAAATCAGAACCCTGGCCCTGGCCAGGGATCGGAGGCTC
CTGAGAAGAAGAAAGCCAAGATCGACGAGCTTAAGGTGTATCCCAAGGAGCTAGAGTCGGAGTT
TGACAACTTTGAGGACTGGCTGCACACGTTCAACCTGTTACGGGGCAAGACTGGGGATGATGAG
GATGGCTCCACAGAGGAAGAACGCATAGTAGGCCGATTCAAGGGTTCCCTCTGTGTGTACAAAG
TGCCACTCCCGGAGGATGTGTCTCGTGAAGCTGGCTACGATCCCACCTACGGAATGTTCCAGGG
CATCCCAAGCAATGACCCCATTAATGTGCTGGTCCGAATCTATGTGGTCCGGGCCACAGACCTG
CACCCGGCTGACATCAATGGCAAAGCCGACCCCTATATCGCCATCAAGTTAGGCAAGACTGACA
TCCGAGACAAGGAGAACTACATCTCCAAGCAGCTCAACCCTGTCTTTGGAAAGTCCTTTGACAT
TGAGGCCTCCTTCCCCATGGAGTCCATGCTGACAGTGGCTGTGTACGACTGGGATCTGGTGGGC
ACTGATGACCTCATCGGAGAAACCAAGATCGACCTGGAAAACCGCTTCTACAGCAAGCACCGTG
CTACCTGCGGCATCGCGCAGACCTATTCCATACATGGCTATAATATCTGGAGAGACCCCATGAA
GCCCAGCCAGATCCTGACCCGCCTCTGCAAAGAGGGCAAAGTGGACGGCCCCCACTTTGGTCCC
CATGGGAGAGTGAAGGTCGCCAACCGTGTCTTCACAGGGCCTTCAGAGATAGAGGATGAGAATG
GTCAGAGGAAGCCCACAGATGAGCACGTGGCACTGTCTGCTCTGAGACACTGGGAGGACATCCC
CCGGGTGGGCTGCCGCCTTGTACCGGAGCACGTGGAGACCAGGCCGTTGCTCAACCCTGACAAG
CCAGGCATTGAGCAGGGCCGCCTGGAGCTGTGGGTGGATATGTTCCCCATGGATATGCCGGCCC
CTGGAACACCTCTGGATATCTCCCCCAGGAAACCCAAGAAGTATGAGCTGCGCGTCATCGTGTG
GAACACAGATGAGGTGGTCCTGGAAGACGACGATTTCTTCACGGGAGAGAAGTCCAGTGATATT
TTTGTGAGGGGGTGGCTGAAGGGCCAGCAGGAGGACAAACAGGACACAGACGTACATTATCACT
CCCTCACGGGTGAGGGCAACTTCAACTGGCGATACCTGTTCCCCTTCGACTACCTGGCGGCCGA
AGAGAAGATCGTTATGTCCAAGAAGGAGTCCATGTTCTCCTGGGATGAGACGGAGTACAAGATA
CCTGCGCGGCTCACCCTGCAGATCTGGGACGCTGACCACTTCTCAGCCGATGACTTCCTGGGGG
CCATCGAGCTGGACCTGAACCGGTTCCCGAGGGGCGCCAAGACAGCCAAGCAGTGCACCATGGA
GATGGCCACCGGGGAGGTGGATGTGCCCCTGGTTTCCATCTTTAAACAGAAACGTGTCAAAGGC
TGGTGGCCCCTCCTGGCCCGCAATGAGAATGATGAATTTGAACTCACGGGCAAAGTAGAGGCAG
AGTTACACCTCCTCACGGCAGAGGAGGCGGAGAAGAACCCGGTGGGCCTGGCTCGCAATGAACC
TGACCCTCTAGAAAAACCCAACCGACCCGACACGGCGTTCGTCTGGTTCCTGAACCCACTCAAA
TCTATCAAGTACCTCATTTGCACCCGGTACAAGTGGCTTATCATCAAGATTGTGCTGGCCCTGC
TTGGGCTGCTCATGCTGGCCCTCTTCCTCTATAGCCTCCCAGGCTACATGGTCAAGAAGCTCCT
AGGGGCATGAAGCGTGCCCACCCTAGCCCGCCCCAGCCCGCCCCAGCATCCCTCCAGGGGCTGC
TGCGTTTGCCTTCCCTCACCTGGACTCTCTCCCAGCTCCCTGCGGAACCGACCACGCCTGGCAG
CCTTGAGCAAGACGCTTGCTGGGCTTCCATCCCCACCCCATCCCCAAAGTGCTGCTTGCCTGAA
CTAGTCCCATGCCTGCCTGGGGTTTGGGGTACAGCTGACCTTCAGAACCAGATACTCTCTCGCC
CCACTTTCTAAGGTACCAAGTTCCTCTGCCCAGCCCCAAGAGTGGTAGTGGCCCAACCCTCCCT
TGTGCTCTCCAAATCGTGTGTTAAGGCTCCAGTGAAATGAACCAAGGAACATGGGGCAGTGTCC
AAGGCTCCGATAAGTAGGAACACGTGTAAAGCACCAGAAATGCCAGCAGAGGCAGCACATCACT
CTACAAAGCATCCTGACCAAGATGGCAGCGGTGGCCAGCTGCTCCTGCGCATGCTCTCCTCTTG
GCTCCCCCTCCCCCCACAGCCACTTGGCCACGTAGCATCAGGCTCCTATCACCAGGGATGCCTC
TGCCTCGGCCAGCCCAGCGCGTGCCAGCTAGTATGCAAGCTCCAAGAGTAAATCGGGTGTCCTT
AGCCGCCCTGAATACTGCCCTGTCCTGCCTGCCGACGGCCACACCCGAGTGTACGCTGAGTGCT
GCCCTCCTGCCTCTGCGGGTCTGCTGGCTGCTTTTCTTGAGTGTGATTTTTTCTCTCTCTCTCT
CCCTCTCTCTCGCTCAATAAAATAAACTCTGAGACAGAAGTGGAGCAGAAA

hide sequence

RefSeq Acc Id:

XM_017594387 ⟹ XP_017449876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,647,891 - 31,744,464 (+)	NCBI
mRatBN7.2	6	25,928,020 - 26,024,631 (+)	NCBI
Rnor_6.0	6	27,328,343 - 27,424,864 (+)	NCBI

Sequence:

show sequence

GGCTGCACGGCTCTGATGAGCTGAAGGAGCAGCTTGCTTTGGTTGCCTTGGTCTCTGTGGGCAG
CAGGAGGAGGAGGCGGCAGCAGCCAGAGAAGAGGGAGGCGTGTGAACCACGCTCCGCCAGCAAG
CTTCTTCCCGCTGCTCTGGCACTACCCAGGTTCTCTCCGCCAGTATGGCCCTGATCGTCCACCT
CAAGACTGTTTCTGAGCTTCGAGGCAGAGCTGATCGGATCGCCAAAGTCACTTTCCGAGGACAG
TCCTTCTATTCCCGGGTCCTGGAGAACTGCGAGGATGTGGCTGACTTCGATGAGACATTCCGGT
GGCCAGTGGCTAGCAGCATCGACAGGAATGAAGTGTTGGAGATTCAGATTTTCAACTACAGCAA
AGTCTTCAGCAACAAACTAATCGGGACCTTCCGCATGGTGCTGCAGAAGGTGGTGGAGGAGAAT
CGGGTAGAGGTGTCTGACACGCTGATCGATGACAACAATGCTATCATCAAGACCAGCCTAAGCA
TGGAGGTCCGGTATCAAGCCGCAGATGGCACAGTAGGCCCTTGGGATGATGGAGACTTTCTGGG
AGATGAATCCCTTCAGGAGGAAGAGAAAGACAGCCAGGAGACAGATGGTCTGCTACCTGGCTCC
CGACCCAGCACCCGGACACCCGGCGAGAAGAGCTTTCGAAGAGCGGGAAGGAGTGTATTCTCGG
CCATGAAACTCGGCAAGACTCGGTCCCACAAAGAGGAGCCCCAAAGACAAGATGAGCCAGCGGT
GCTGGAGATGGAGGACCTGGACCACCTAGCCATCCGGCTGGGGGATGGGCTGGATCCTGACTCA
GTGTCTCTAGCCTCGGTCACTGCTCTCACCAGCAATGTCTCCAACAAACGGTCTAAGCCAGATA
TTAAAATGGAACCGAGTGCTGGGAGACCCATGGATTACCAGGTCAGCATCACAGTGATTGAGGC
TCGGCAGCTGGTGGGTTTGAACATGGACCCCGTGGTGTGCGTGGAGGTGGGCGATGACAAAAAA
TACACATCCATGAAGGAGTCCACAAACTGCCCTTACTACAACGAGTACTTCGTCTTTGACTTCC
ACGTCTCTCCTGATGTCATGTTTGACAAGATCATCAAGATCTCGGTTATCCATTCTAAGAACCT
GCTTCGAAGCGGCACTCTGGTGGGCTCCTTCAAAATGGATGTGGGGACCGTGTACTCCCAGCCT
GAACACCAGTTCCATCACAAATGGGCTATCCTGTCAGACCCCGATGACATCTCTGCCGGGCTGA
AGGGCTATGTAAAGTGTGATGTCGCCGTGGTGGGCAAGGGAGACAACATCAAGACACCCCACAA
GGCCAACGAGACAGATGAGGATGACATTGAAGGGAACTTGCTGCTCCCCGAGGGCGTGCCCCCA
GAACGGCAGTGGGCCCGGTTCTACGTGAAAATTTACCGAGCAGAGGGACTGCCCCGGATGAACA
CAAGCCTCATGGCCAACGTAAAGAAGGCGTTCATCGGTGAGAACAAGGACCTCGTCGACCCCTA
CGTTCAAGTCTTCTTTGCTGGACAGAAGGGCAAAACATCAGTGCAGAAGAGCAGCTATGAGCCG
CTGTGGAATGAGCAGGTCGTCTTTACAGATCTGTTCCCCCCACTCTGCAAGCGCATGAAGGTGC
AGATCCGAGACTCCGACAAGGTCAACGACGTGGCCATCGGCACCCACTTCATCGACCTGCGCAA
GATTTCCAACGATGGAGACAAAGGCTTCCTGCCTACGCTCGGCCCAGCCTGGGTGAACATGTAC
GGCTCCACACGCAACTACACGCTGCTGGACGAGCACCAGGACCTGAATGAGGGCCTGGGTGAGG
GGGTGTCCTTCCGTGCCCGCCTCATGTTGGGACTGGCTGTGGAGATCCTAGACACCTCCAACCC
AGAGCTCACCAGCTCCACCGAGGTGCAGGTGGAGCAGGCCACACCTGTCTCAGAGAGCTGCACA
GGGAGAATGGAAGAATTTTTCCTATTTGGAGCCTTCCTGGAAGCCTCAATGATCGACCGGAAAA
ATGGGGACAAGCCAGTGACCTTTGAGGTGACCATAGGAAACTATGGCAATGAAGTCGATGGTAC
ATCCCGGCCCCAGAGGCCTCGGCCCCGGAAGGAACCTGGGGATGAAGAAGAGGTAGACCTGATT
CAGAACTCCAGTGACGACGAGGGTGATGAAGCCGGGGACCTGGCCTCAGTGTCCTCCACCCCAC
CTATGAGGCCCCAGATCACAGACAGGAACTATTTCCACCTGCCCTACCTAGAGCGCAAGCCCTG
CATCTACATCAAGAGCTGGTGGCCTGACCAGCGGCGCCGTCTCTACAACGCAAACATCATGGAC
CACATTGCTGACAAGCTGGAAGAAGGTCTGAATGATGTCCAGGAGATGATCAAAACGGAGAAGT
CCTACCCGGAGCGACGCCTGCGGGGTGTGCTAGAGGAACTCAGCTGTGGCTGCCACCGCTTCCT
CTCCCTCTCGGACAAGGACCAGGGTCACTCGTCCCGCACCAGGCTGGATCGGGAGCGCCTCAAA
TCCTGTATGAGGGAGCTGGAGAGCATGGGACAACAAGCCAAGAGCCTGAGGGCTCAGGTGAAGC
GACACACTGTACGGGACAAGCTGAGGTTATGCCAGAACTTCCTGCAGAAGCTACGCTTCCTAGC
TGATGAGCCCCAGCACAGCATCCCCGATGTGTTCATTTGGATGATGAGTAATAACAAACGTATC
GCCTACGCCCGCGTGCCTTCCAAAGACCTTTTGTTCTCCATTGTGGAGGAGGAATTGGGCAAGG
ACTGCGCCAAGGTCAAGACCCTCTTCCTGAAGCTGCCAGGAAAGAGGGGCTTCGGCTCGGCAGG
CTGGACAGTACAGGCCAAGCTGGAACTCTACCTGTGGCTGGGCCTCAGCAAGCAGAGAAAGGAC
TTCCTGTGTGGCCTGCCTTGTGGCTTCGAGGAGGTCAAGGCAGCCCAAGGCCTGGGTCTGCATT
CCTTTCCGCCCATCAGCCTTGTCTACACCAAGAAGCAAACCTTCCAGCTCCGAGCCCACATGTA
TCAGGCCCGAAGCCTCTTCGCCGCTGACAGCACTGGGCTCTCTGATCCTTTTGCCCGAGTCTTC
TTCATCAACCAGAGCCAGTGCACGGAGGTCCTAAACGAGACACTGTGTCCTACTTGGGACCAAA
TGCTGGTATTTGACAACCTGGAGCTGTACGGTGAAGCTCATGAGTTACGAGATGATCCCCCCAT
CATTGTCATTGAAATCTACGACCAGGACAGCATGGGCAAAGCTGACTTCATGGGCCGGACCTTT
GCCAAGCCCCTGGTGAAGATGGCAGACGAGGCATATTGCCCGCCTCGCTTCCCGCCCCAGCTTG
AGTACTACCAGATCTACCGAGGCAACGCCACGGCCGGAGACCTACTGGCTGCCTTTGAGCTGCT
GCAGATTGGACCATCGGGGAAGGCTGACCTGCCACCCATCAATGGCCCAGTGGACATGGACAGA
GGGCCCATCATGCCTGTGCCTGTGGGAATCCGGCCCGTGCTCAGCAAGTACAGAGTGGAGGTGC
TGTTCTGGGGCCTGAGGGACTTAAAGAGGGTGAACCTGGCCCAGGTGGACCGGCCACGGGTGGA
CATCGAGTGTGCGGGAAAAGGGGTACAATCGTCCCTGATCCACAATTATAAGAAGAACCCCAAC
TTCAACACCCTGGTCAAGTGGTTTGAAGTGGACCTCCCAGAGAATGAGCTCCTGCACCCACCCT
TGAACATCCGGGTGGTGGACTGCCGGGCCTTTGGACGATACACCCTGGTGGGCTCCCATGCAGT
CAGCTCACTACGACGCTTCATCTACCGACCCCCGGACCGCTCGGCCGCCAACTGGAACACCACA
GGGGAGGTTGTAGTGAGCATGGAACCTGAAGTGCCAGTTAAGAAGCTGGAGACCCTGGTGAAGC
TGGATGCGACTTCTGATGCTGTGGTCAAGGTGGATGTGGCTGAAGATGAGAAGGAAAGGAAGAA
GAAGAAAAAGAAAGGCCCATCAGAGGAGGCAGAGGAGGAGGAACCCGATGAGAGCATGCTGGAT
TGGTGGTCCAAGTACTTTGCCTCCATTGACACAATGAAGGAGCAACTTCGACAACATGAGACCT
CTGGGATTGATTTGGAAGAGAAGGAAGAAATGGATAGCACTGAGGGCCTGAAGGGGCCAGTGAA
GAACAAGGAGAAGTCCAGAGCTGCAAAGGAGGAAAAAAAGAAGAAAAATCAGAACCCTGGCCCT
GGCCAGGGATCGGAGGCTCCTGAGAAGAAGAAAGCCAAGATCGACGAGCTTAAGGTGTATCCCA
AGGAGCTAGAGTCGGAGTTTGACAACTTTGAGGACTGGCTGCACACGTTCAACCTGTTACGGGG
CAAGACTGGGGATGATGAGGATGGCTCCACAGAGGAAGAACGCATAGTAGGCCGATTCAAGGGT
TCCCTCTGTGTGTACAAAGTGCCACTCCCGGAGGATGTGTCTCGTGAAGCTGGCTACGATCCCA
CCTACGGAATGTTCCAGGGCATCCCAAGCAATGACCCCATTAATGTGCTGGTCCGAATCTATGT
GGTCCGGGCCACAGACCTGCACCCGGCTGACATCAATGGCAAAGCCGACCCCTATATCGCCATC
AAGTTAGGCAAGACTGACATCCGAGACAAGGAGAACTACATCTCCAAGCAGCTCAACCCTGTCT
TTGGAAAGTCCTTTGACATTGAGGCCTCCTTCCCCATGGAGTCCATGCTGACAGTGGCTGTGTA
CGACTGGGATCTGGTGGGCACTGATGACCTCATCGGAGAAACCAAGATCGACCTGGAAAACCGC
TTCTACAGCAAGCACCGTGCTACCTGCGGCATCGCGCAGACCTATTCCATACATGGCTATAATA
TCTGGAGAGACCCCATGAAGCCCAGCCAGATCCTGACCCGCCTCTGCAAAGAGGGCAAAGTGGA
CGGCCCCCACTTTGGTCCCCATGGGAGAGTGAAGGTCGCCAACCGTGTCTTCACAGGGCCTTCA
GAGATAGAGGATGAGAATGGTCAGAGGAAGCCCACAGATGAGCACGTGGCACTGTCTGCTCTGA
GACACTGGGAGGACATCCCCCGGGTGGGCTGCCGCCTTGTACCGGAGCACGTGGAGACCAGGCC
GTTGCTCAACCCTGACAAGCCAGGCATTGAGCAGGGCCGCCTGGAGCTGTGGGTGGATATGTTC
CCCATGGATATGCCGGCCCCTGGAACACCTCTGGATATCTCCCCCAGGAAACCCAAGAAGTATG
AGCTGCGCGTCATCGTGTGGAACACAGATGAGGTGGTCCTGGAAGACGACGATTTCTTCACGGG
AGAGAAGTCCAGTGATATTTTTGTGAGGGGGTGGCTGAAGGGCCAGCAGGAGGACAAACAGGAC
ACAGACGTACATTATCACTCCCTCACGGGTGAGGGCAACTTCAACTGGCGATACCTGTTCCCCT
TCGACTACCTGGCGGCCGAAGAGAAGATCGTTATGTCCAAGAAGGAGTCCATGTTCTCCTGGGA
TGAGACGGAGTACAAGATACCTGCGCGGCTCACCCTGCAGATCTGGGACGCTGACCACTTCTCA
GCCGATGACTTCCTGGGGGCCATCGAGCTGGACCTGAACCGGTTCCCGAGGGGCGCCAAGACAG
CCAAGCAGTGCACCATGGAGATGGCCACCGGGGAGGTGGATGTGCCCCTGGTTTCCATCTTTAA
ACAGAAACGTGTCAAAGGCTGGTGGCCCCTCCTGGCCCGCAATGAGAATGATGAATTTGAACTC
ACGGGCAAAGTAGAGGCAGAGTTACACCTCCTCACGGCAGAGGAGGCGGAGAAGAACCCGGTGG
GCCTGGCTCGCAATGAACCTGACCCTCTAGAAAAACCCAACCGACCCGACACGGCGTTCGTCTG
GTTCCTGAACCCACTCAAATCTATCAAGTACCTCATTTGCACCCGGTACAAGTGGCTTATCATC
AAGATTGTGCTGGCCCTGCTTGGGCTGCTCATGCTGGCCCTCTTCCTCTATAGCCTCCCAGGCT
ACATGGTCAAGAAGCTCCTAGGGGCATGAAGCGTGCCCACCCTAGCCCGCCCCAGCCCGCCCCA
GCATCCCTCCAGGGGCTGCTGCGTTTGCCTTCCCTCACCTGGACTCTCTCCCAGCTCCCTGCGG
AACCGACCACGCCTGGCAGCCTTGAGCAAGACGCTTGCTGGGCTTCCATCCCCACCCCATCCCC
AAAGTGCTGCTTGCCTGAACTAGTCCCATGCCTGCCTGGGGTTTGGGGTACAGCTGACCTTCAG
AACCAGATACTCTCTCGCCCCACTTTCTAAGGTACCAAGTTCCTCTGCCCAGCCCCAAGAGTGG
TAGTGGCCCAACCCTCCCTTGTGCTCTCCAAATCGTGTGTTAAGGCTCCAGTGAAATGAACCAA
GGAACATGGGGCAGTGTCCAAGGCTCCGATAAGTAGGAACACGTGTAAAGCACCAGAAATGCCA
GCAGAGGCAGCACATCACTCTACAAAGCATCCTGACCAAGATGGCAGCGGTGGCCAGCTGCTCC
TGCGCATGCTCTCCTCTTGGCTCCCCCTCCCCCCACAGCCACTTGGCCACGTAGCATCAGGCTC
CTATCACCAGGGATGCCTCTGCCTCGGCCAGCCCAGCGCGTGCCAGCTAGTATGCAAGCTCCAA
GAGTAAATCGGGTGTCCTTAGCCGCCCTGAATACTGCCCTGTCCTGCCTGCCGACGGCCACACC
CGAGTGTACGCTGAGTGCTGCCCTCCTGCCTCTGCGGGTCTGCTGGCTGCTTTTCTTGAGTGTG
ATTTTTTCTCTCTCTCTCTCCCTCTCTCTCGCTCAATAAAATAAACTCTGAGACAGAAGTGGAG
CAGAAA

hide sequence

RefSeq Acc Id:

XM_039113005 ⟹ XP_038968933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,647,890 - 31,743,624 (+)	NCBI
mRatBN7.2	6	25,928,020 - 26,024,631 (+)	NCBI

RefSeq Acc Id:

XM_039113006 ⟹ XP_038968934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,647,890 - 31,743,623 (+)	NCBI
mRatBN7.2	6	25,928,020 - 26,024,631 (+)	NCBI

RefSeq Acc Id:

XM_063262552 ⟹ XP_063118622

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,647,890 - 31,744,464 (+)	NCBI

RefSeq Acc Id:

XM_063262553 ⟹ XP_063118623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,647,869 - 31,741,745 (+)	NCBI

RefSeq Acc Id:

XM_063262555 ⟹ XP_063118625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,647,890 - 31,741,745 (+)	NCBI

RefSeq Acc Id:

XM_063262556 ⟹ XP_063118626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,647,891 - 31,744,464 (+)	NCBI

RefSeq Acc Id:

XM_063262557 ⟹ XP_063118627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,647,890 - 31,741,745 (+)	NCBI

RefSeq Acc Id:

XM_063262558 ⟹ XP_063118628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,647,891 - 31,741,745 (+)	NCBI

RefSeq Acc Id:

XM_063262559 ⟹ XP_063118629

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	31,718,022 - 31,741,745 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001263649	(Get FASTA)	NCBI Sequence Viewer
	XP_006239895	(Get FASTA)	NCBI Sequence Viewer
	XP_017449876	(Get FASTA)	NCBI Sequence Viewer
	XP_038968933	(Get FASTA)	NCBI Sequence Viewer
	XP_038968934	(Get FASTA)	NCBI Sequence Viewer
	XP_063118622	(Get FASTA)	NCBI Sequence Viewer
	XP_063118623	(Get FASTA)	NCBI Sequence Viewer
	XP_063118625	(Get FASTA)	NCBI Sequence Viewer
	XP_063118626	(Get FASTA)	NCBI Sequence Viewer
	XP_063118627	(Get FASTA)	NCBI Sequence Viewer
	XP_063118628	(Get FASTA)	NCBI Sequence Viewer
	XP_063118629	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG30298	(Get FASTA)	NCBI Sequence Viewer
	EDM02990	(Get FASTA)	NCBI Sequence Viewer
	EDM02991	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000046997
	ENSRNOP00000046997.2
	ENSRNOP00000074490
	ENSRNOP00000110964
GenBank Protein	Q9ERC5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001263649 ⟸ NM_001276720

- UniProtKB:

A0A0G2K867 (UniProtKB/TrEMBL), A6HAD6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALIVHLKTVSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEI
QIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAADGTVGPW
DDGDFLGDESLQEEEKDSQETDGLLPGSRPSTRTPGEKSFRRAGRSVFSAMKLGKTRSHKEEPQ
RQDEPAVLEMEDLDHLAIRLGDGLDPDSVSLASVTALTSNVSNKRSKPDIKMEPSAGRPMDYQV
SITVIEARQLVGLNMDPVVCVEVGDDKKYTSMKESTNCPYYNEYFVFDFHVSPDVMFDKIIKIS
VIHSKNLLRSGTLVGSFKMDVGTVYSQPEHQFHHKWAILSDPDDISAGLKGYVKCDVAVVGKGD
NIKTPHKANETDEDDIEGNLLLPEGVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGEN
KDLVDPYVQVFFAGQKGKTSVQKSSYEPLWNEQVVFTDLFPPLCKRMKVQIRDSDKVNDVAIGT
HFIDLRKISNDGDKGFLPTLGPAWVNMYGSTRNYTLLDEHQDLNEGLGEGVSFRARLMLGLAVE
ILDTSNPELTSSTEVQVEQATPVSESCTGRMEEFFLFGAFLEASMIDRKNGDKPVTFEVTIGNY
GNEVDGTSRPQRPRPRKEPGDEEEVDLIQNSSDDEGDEAGDLASVSSTPPMRPQITDRNYFHLP
YLERKPCIYIKSWWPDQRRRLYNANIMDHIADKLEEGLNDVQEMIKTEKSYPERRLRGVLEELS
CGCHRFLSLSDKDQGHSSRTRLDRERLKSCMRELESMGQQAKSLRAQVKRHTVRDKLRLCQNFL
QKLRFLADEPQHSIPDVFIWMMSNNKRIAYARVPSKDLLFSIVEEELGKDCAKVKTLFLKLPGK
RGFGSAGWTVQAKLELYLWLGLSKQRKDFLCGLPCGFEEVKAAQGLGLHSFPPISLVYTKKQTF
QLRAHMYQARSLFAADSTGLSDPFARVFFINQSQCTEVLNETLCPTWDQMLVFDNLELYGEAHE
LRDDPPIIVIEIYDQDSMGKADFMGRTFAKPLVKMADEAYCPPRFPPQLEYYQIYRGNATAGDL
LAAFELLQIGPSGKADLPPINGPVDMDRGPIMPVPVGIRPVLSKYRVEVLFWGLRDLKRVNLAQ
VDRPRVDIECAGKGVQSSLIHNYKKNPNFNTLVKWFEVDLPENELLHPPLNIRVVDCRAFGRYT
LVGSHAVSSLRRFIYRPPDRSAANWNTTVRLLRGYHMLCNGGPSSCPTGEVVVSMEPEVPVKKL
ETLVKLDATSDAVVKVDVAEDEKERKKKKKKGPSEEAEEEEPDESMLDWWSKYFASIDTMKEQL
RQHETSGIDLEEKEEMDSTEGLKGPVKNKEKSRAAKEEKKKKNQNPGPGQGSEAPEKKKAKIDE
LKVYPKELESEFDNFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPEDVSRE
AGYDPTYGMFQGIPSNDPINVLVRIYVVRATDLHPADINGKADPYIAIKLGKTDIRDKENYISK
QLNPVFGKSFDIEASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATCGIAQTYS
IHGYNIWRDPMKPSQILTRLCKEGKVDGPHFGPHGRVKVANRVFTGPSEIEDENGQRKPTDEHV
ALSALRHWEDIPRVGCRLVPEHVETRPLLNPDKPGIEQGRLELWVDMFPMDMPAPGTPLDISPR
KPKKYELRVIVWNTDEVVLEDDDFFTGEKSSDIFVRGWLKGQQEDKQDTDVHYHSLTGEGNFNW
RYLFPFDYLAAEEKIVMSKKESMFSWDETEYKIPARLTLQIWDADHFSADDFLGAIELDLNRFP
RGAKTAKQCTMEMATGEVDVPLVSIFKQKRVKGWWPLLARNENDEFELTGKVEAELHLLTAEEA
EKNPVGLARNEPDPLEKPNRPDTSFIWFLNPLKSARYFLWHTYRWLLLKLLLLLLLLLLLALFL
YSLPGYLAKKILGA

hide sequence

RefSeq Acc Id:	XP_006239895 ⟸ XM_006239833
- Peptide Label:	isoform X5
- UniProtKB:	Q9ERC5 (UniProtKB/Swiss-Prot), A6HAD6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALIVHLKTVSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEI QIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAADGTVGPW DDGDFLGDESLQEEEKDSQETDGLLPGSRPSTRTPGEKSFRSKGKEKTKGGRDGEHKAGRSVFS AMKLGKTRSHKEEPQRQDEPAVLEMEDLDHLAIRLGDGLDPDSVSLASVTALTSNVSNKRSKPD IKMEPSAGRPMDYQVSITVIEARQLVGLNMDPVVCVEVGDDKKYTSMKESTNCPYYNEYFVFDF HVSPDVMFDKIIKISVIHSKNLLRSGTLVGSFKMDVGTVYSQPEHQFHHKWAILSDPDDISAGL KGYVKCDVAVVGKGDNIKTPHKANETDEDDIEGNLLLPEGVPPERQWARFYVKIYRAEGLPRMN TSLMANVKKAFIGENKDLVDPYVQVFFAGQKGKTSVQKSSYEPLWNEQVVFTDLFPPLCKRMKV QIRDSDKVNDVAIGTHFIDLRKISNDGDKGFLPTLGPAWVNMYGSTRNYTLLDEHQDLNEGLGE GVSFRARLMLGLAVEILDTSNPELTSSTEVQVEQATPVSESCTGRMEEFFLFGAFLEASMIDRK NGDKPVTFEVTIGNYGNEVDGTSRPQRPRPRKEPGDEEEVDLIQNSSDDEGDEAGDLASVSSTP PMRPQITDRNYFHLPYLERKPCIYIKSWWPDQRRRLYNANIMDHIADKLEEGLNDVQEMIKTEK SYPERRLRGVLEELSCGCHRFLSLSDKDQGHSSRTRLDRERLKSCMRELESMGQQAKSLRAQVK RHTVRDKLRLCQNFLQKLRFLADEPQHSIPDVFIWMMSNNKRIAYARVPSKDLLFSIVEEELGK DCAKVKTLFLKLPGKRGFGSAGWTVQAKLELYLWLGLSKQRKDFLCGLPCGFEEVKAAQGLGLH SFPPISLVYTKKQTFQLRAHMYQARSLFAADSTGLSDPFARVFFINQSQCTEVLNETLCPTWDQ MLVFDNLELYGEAHELRDDPPIIVIEIYDQDSMGKADFMGRTFAKPLVKMADEAYCPPRFPPQL EYYQIYRGNATAGDLLAAFELLQIGPSGKADLPPINGPVDMDRGPIMPVPVGIRPVLSKYRVEV LFWGLRDLKRVNLAQVDRPRVDIECAGKGVQSSLIHNYKKNPNFNTLVKWFEVDLPENELLHPP LNIRVVDCRAFGRYTLVGSHAVSSLRRFIYRPPDRSAANWNTTGEVVVSMEPEVPVKKLETLVK LDATSDAVVKVDVAEDEKERKKKKKKGPSEEAEEEEPDESMLDWWSKYFASIDTMKEQLRQHET SGIDLEEKEEMDSTEGLKGPVKNKEKSRAAKEEKKKKNQNPGPGQGSEAPEKKKAKIDELKVYP KELESEFDNFEDWLHTFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPEDVSREAGYDP TYGMFQGIPSNDPINVLVRIYVVRATDLHPADINGKADPYIAIKLGKTDIRDKENYISKQLNPV FGKSFDIEASFPMESMLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATCGIAQTYSIHGYN IWRDPMKPSQILTRLCKEGKVDGPHFGPHGRVKVANRVFTGPSEIEDENGQRKPTDEHVALSAL RHWEDIPRVGCRLVPEHVETRPLLNPDKPGIEQGRLELWVDMFPMDMPAPGTPLDISPRKPKKY ELRVIVWNTDEVVLEDDDFFTGEKSSDIFVRGWLKGQQEDKQDTDVHYHSLTGEGNFNWRYLFP FDYLAAEEKIVMSKKESMFSWDETEYKIPARLTLQIWDADHFSADDFLGAIELDLNRFPRGAKT AKQCTMEMATGEVDVPLVSIFKQKRVKGWWPLLARNENDEFELTGKVEAELHLLTAEEAEKNPV GLARNEPDPLEKPNRPDTAFVWFLNPLKSIKYLICTRYKWLIIKIVLALLGLLMLALFLYSLPG YMVKKLLGA hide sequence

RefSeq Acc Id:	XP_017449876 ⟸ XM_017594387
- Peptide Label:	isoform X8
- UniProtKB:	A6HAD6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALIVHLKTVSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEI QIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAADGTVGPW DDGDFLGDESLQEEEKDSQETDGLLPGSRPSTRTPGEKSFRRAGRSVFSAMKLGKTRSHKEEPQ RQDEPAVLEMEDLDHLAIRLGDGLDPDSVSLASVTALTSNVSNKRSKPDIKMEPSAGRPMDYQV SITVIEARQLVGLNMDPVVCVEVGDDKKYTSMKESTNCPYYNEYFVFDFHVSPDVMFDKIIKIS VIHSKNLLRSGTLVGSFKMDVGTVYSQPEHQFHHKWAILSDPDDISAGLKGYVKCDVAVVGKGD NIKTPHKANETDEDDIEGNLLLPEGVPPERQWARFYVKIYRAEGLPRMNTSLMANVKKAFIGEN KDLVDPYVQVFFAGQKGKTSVQKSSYEPLWNEQVVFTDLFPPLCKRMKVQIRDSDKVNDVAIGT HFIDLRKISNDGDKGFLPTLGPAWVNMYGSTRNYTLLDEHQDLNEGLGEGVSFRARLMLGLAVE ILDTSNPELTSSTEVQVEQATPVSESCTGRMEEFFLFGAFLEASMIDRKNGDKPVTFEVTIGNY GNEVDGTSRPQRPRPRKEPGDEEEVDLIQNSSDDEGDEAGDLASVSSTPPMRPQITDRNYFHLP YLERKPCIYIKSWWPDQRRRLYNANIMDHIADKLEEGLNDVQEMIKTEKSYPERRLRGVLEELS CGCHRFLSLSDKDQGHSSRTRLDRERLKSCMRELESMGQQAKSLRAQVKRHTVRDKLRLCQNFL QKLRFLADEPQHSIPDVFIWMMSNNKRIAYARVPSKDLLFSIVEEELGKDCAKVKTLFLKLPGK RGFGSAGWTVQAKLELYLWLGLSKQRKDFLCGLPCGFEEVKAAQGLGLHSFPPISLVYTKKQTF QLRAHMYQARSLFAADSTGLSDPFARVFFINQSQCTEVLNETLCPTWDQMLVFDNLELYGEAHE LRDDPPIIVIEIYDQDSMGKADFMGRTFAKPLVKMADEAYCPPRFPPQLEYYQIYRGNATAGDL LAAFELLQIGPSGKADLPPINGPVDMDRGPIMPVPVGIRPVLSKYRVEVLFWGLRDLKRVNLAQ VDRPRVDIECAGKGVQSSLIHNYKKNPNFNTLVKWFEVDLPENELLHPPLNIRVVDCRAFGRYT LVGSHAVSSLRRFIYRPPDRSAANWNTTGEVVVSMEPEVPVKKLETLVKLDATSDAVVKVDVAE DEKERKKKKKKGPSEEAEEEEPDESMLDWWSKYFASIDTMKEQLRQHETSGIDLEEKEEMDSTE GLKGPVKNKEKSRAAKEEKKKKNQNPGPGQGSEAPEKKKAKIDELKVYPKELESEFDNFEDWLH TFNLLRGKTGDDEDGSTEEERIVGRFKGSLCVYKVPLPEDVSREAGYDPTYGMFQGIPSNDPIN VLVRIYVVRATDLHPADINGKADPYIAIKLGKTDIRDKENYISKQLNPVFGKSFDIEASFPMES MLTVAVYDWDLVGTDDLIGETKIDLENRFYSKHRATCGIAQTYSIHGYNIWRDPMKPSQILTRL CKEGKVDGPHFGPHGRVKVANRVFTGPSEIEDENGQRKPTDEHVALSALRHWEDIPRVGCRLVP EHVETRPLLNPDKPGIEQGRLELWVDMFPMDMPAPGTPLDISPRKPKKYELRVIVWNTDEVVLE DDDFFTGEKSSDIFVRGWLKGQQEDKQDTDVHYHSLTGEGNFNWRYLFPFDYLAAEEKIVMSKK ESMFSWDETEYKIPARLTLQIWDADHFSADDFLGAIELDLNRFPRGAKTAKQCTMEMATGEVDV PLVSIFKQKRVKGWWPLLARNENDEFELTGKVEAELHLLTAEEAEKNPVGLARNEPDPLEKPNR PDTAFVWFLNPLKSIKYLICTRYKWLIIKIVLALLGLLMLALFLYSLPGYMVKKLLGA hide sequence

Ensembl Acc Id:

ENSRNOP00000074490 ⟸ ENSRNOT00000091159

Ensembl Acc Id:

ENSRNOP00000046997 ⟸ ENSRNOT00000044278

RefSeq Acc Id:	XP_038968933 ⟸ XM_039113005
- Peptide Label:	isoform X2
- UniProtKB:	A6HAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968934 ⟸ XM_039113006
- Peptide Label:	isoform X2
- UniProtKB:	A6HAD6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000078196 ⟸ ENSRNOT00000105491

RefSeq Acc Id:	XP_063118623 ⟸ XM_063262553
- Peptide Label:	isoform X2
- UniProtKB:	A6HAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118622 ⟸ XM_063262552
- Peptide Label:	isoform X1
- UniProtKB:	A6HAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118627 ⟸ XM_063262557
- Peptide Label:	isoform X6
- UniProtKB:	A6HAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118625 ⟸ XM_063262555
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K867 (UniProtKB/TrEMBL), A6HAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118626 ⟸ XM_063262556
- Peptide Label:	isoform X4
- UniProtKB:	A6HAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118628 ⟸ XM_063262558
- Peptide Label:	isoform X7
- UniProtKB:	A6HAD6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118629 ⟸ XM_063262559
- Peptide Label:	isoform X9

Ensembl Acc Id:

ENSRNOP00000110964 ⟸ ENSRNOT00000124771

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9ERC5-F1-model_v2	AlphaFold	Q9ERC5	1-1993	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620646	AgrOrtholog
BioCyc Gene	G2FUF-38309	BioCyc
Ensembl Genes	ENSRNOG00000009967	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000044278	ENTREZGENE
	ENSRNOT00000044278.5	UniProtKB/Swiss-Prot
	ENSRNOT00000091159	ENTREZGENE
	ENSRNOT00000124771	ENTREZGENE
Gene3D-CATH	2.60.40.150	UniProtKB/Swiss-Prot
InterPro	C2_dom	UniProtKB/Swiss-Prot
	C2_domain_sf	UniProtKB/Swiss-Prot
	C2A_Ferlin	UniProtKB/Swiss-Prot
	C2B_Ferlin	UniProtKB/Swiss-Prot
	C2C_Ferlin	UniProtKB/Swiss-Prot
	C2D_Ferlin	UniProtKB/Swiss-Prot
	C2E_Ferlin	UniProtKB/Swiss-Prot
	C2F_Ferlin	UniProtKB/Swiss-Prot
	FerIin_dom	UniProtKB/Swiss-Prot
	Ferlin	UniProtKB/Swiss-Prot
	Ferlin_B-domain	UniProtKB/Swiss-Prot
	Ferlin_C	UniProtKB/Swiss-Prot
	Ferlin_DSRM	UniProtKB/Swiss-Prot
NCBI Gene	84573	ENTREZGENE
PANTHER	PTHR12546	UniProtKB/Swiss-Prot
	PTHR12546:SF32	UniProtKB/Swiss-Prot
Pfam	dsrm_Ferlin	UniProtKB/Swiss-Prot
	FerB	UniProtKB/Swiss-Prot
	FerI	UniProtKB/Swiss-Prot
	Ferlin_C	UniProtKB/Swiss-Prot
	PF00168	UniProtKB/Swiss-Prot
PhenoGen	Otof	PhenoGen
PRINTS	C2DOMAIN	UniProtKB/Swiss-Prot
PROSITE	PS50004	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000009967	RatGTEx
SMART	FerB	UniProtKB/Swiss-Prot
	FerI	UniProtKB/Swiss-Prot
	SM00239	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49562	UniProtKB/Swiss-Prot
UniProt	A0A0G2K867	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y9Z3_RAT	UniProtKB/TrEMBL
	A0ABK0M5P8_RAT	UniProtKB/TrEMBL
	A6HAD6	ENTREZGENE, UniProtKB/TrEMBL
	OTOF_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Otof	otoferlin			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Otof	otoferlin			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

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