Zfp148 (zinc finger protein 148) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Zfp148 (zinc finger protein 148) Rattus norvegicus
Analyze
Symbol: Zfp148
Name: zinc finger protein 148
RGD ID: 62063
Description: Enables transcription cis-regulatory region binding activity. Involved in negative regulation of transcription by RNA polymerase II and protein-containing complex assembly. Predicted to be located in nucleus. Orthologous to human ZNF148 (zinc finger protein 148); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: transcription factor ZBP-89; Zbp-89; zinc finger DNA-binding protein 89; Znf148
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81180,780,865 - 80,890,877 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1180,786,087 - 80,890,877 (-)EnsemblGRCr8
mRatBN7.21167,276,455 - 67,385,803 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1167,281,707 - 67,385,772 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1176,115,450 - 76,222,690 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01168,777,301 - 68,884,541 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,807,855 - 67,911,921 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,509,909 - 70,618,422 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,514,750 - 70,618,347 (-)Ensemblrn6Rnor6.0
Rnor_5.01173,597,695 - 73,704,353 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41169,103,680 - 69,207,360 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1166,730,467 - 66,835,205 (-)NCBICelera
RGSC_v3.11169,161,268 - 69,264,950 (-)NCBI
Cytogenetic Map11q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP)
dexamethasone  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fenthion  (ISO)
fenvalerate  (EXP)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
linsidomine  (EXP)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
PhIP  (EXP)
pirinixic acid  (ISO)
propiconazole  (ISO)
pyrethrins  (EXP)
resveratrol  (EXP,ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sulindac  (EXP)
tamibarotene  (ISO)
testosterone enanthate  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ZBP-89, a Kruppel-like zinc finger protein, inhibits epidermal growth factor induction of the gastrin promoter. Merchant JL, etal., Mol Cell Biol 1996 Dec;16(12):6644-53.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:9030551   PMID:12524542   PMID:12771217   PMID:14654702   PMID:17560543   PMID:22926577  


Genomics

Comparative Map Data
Zfp148
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81180,780,865 - 80,890,877 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1180,786,087 - 80,890,877 (-)EnsemblGRCr8
mRatBN7.21167,276,455 - 67,385,803 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1167,281,707 - 67,385,772 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1176,115,450 - 76,222,690 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01168,777,301 - 68,884,541 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,807,855 - 67,911,921 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,509,909 - 70,618,422 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,514,750 - 70,618,347 (-)Ensemblrn6Rnor6.0
Rnor_5.01173,597,695 - 73,704,353 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41169,103,680 - 69,207,360 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1166,730,467 - 66,835,205 (-)NCBICelera
RGSC_v3.11169,161,268 - 69,264,950 (-)NCBI
Cytogenetic Map11q22NCBI
ZNF148
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383125,225,669 - 125,375,354 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3125,225,669 - 125,375,842 (-)Ensemblhg38GRCh38
GRCh373124,944,513 - 125,094,198 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363126,427,203 - 126,576,888 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343126,433,610 - 126,576,785NCBI
Celera3123,353,697 - 123,503,401 (-)NCBICelera
Cytogenetic Map3q21.2NCBI
HuRef3122,320,900 - 122,470,192 (-)NCBIHuRef
CHM1_13124,907,515 - 125,057,227 (-)NCBICHM1_1
T2T-CHM13v2.03127,952,391 - 128,102,007 (-)NCBIT2T-CHM13v2.0
Zfp148
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391633,201,145 - 33,324,273 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1633,201,206 - 33,324,733 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381633,380,775 - 33,503,903 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1633,380,836 - 33,504,363 (+)Ensemblmm10GRCm38
MGSCv371633,380,861 - 33,503,989 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361633,300,583 - 33,420,121 (+)NCBIMGSCv36mm8
Celera1633,864,197 - 33,987,285 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1623.93NCBI
Znf148
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542724,294,926 - 24,377,217 (-)Ensembl
ChiLan1.0NW_00495542724,294,926 - 24,430,697 (-)NCBIChiLan1.0ChiLan1.0
ZNF148
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22123,222,162 - 123,371,893 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13123,226,939 - 123,381,474 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03122,357,670 - 122,507,142 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13129,223,025 - 129,372,404 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3129,229,690 - 129,320,554 (-)EnsemblpanPan2panpan1.1
ZNF148
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13328,229,270 - 28,347,939 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3328,233,728 - 28,348,154 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3328,251,750 - 28,370,922 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03328,461,693 - 28,581,111 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3328,466,608 - 28,581,039 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13328,259,976 - 28,379,017 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03328,304,821 - 28,423,968 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03328,923,658 - 29,043,333 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Znf148
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602126,098,514 - 126,181,308 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367256,962 - 83,034 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367256,968 - 89,762 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF148
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13134,969,729 - 135,089,151 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113134,968,774 - 135,093,828 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213144,512,438 - 144,621,137 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF148
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12255,467,453 - 55,609,050 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041110,703,025 - 110,849,458 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf148
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247311,278,242 - 1,354,063 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247311,271,478 - 1,410,047 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Znf148
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1418,185,570 - 18,297,474 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zfp148
642 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:73
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000002435
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat

Markers in Region
Zfp148  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21167,283,468 - 67,283,673 (+)MAPPERmRatBN7.2
Rnor_6.01170,516,102 - 70,516,306NCBIRnor6.0
Rnor_5.01173,603,224 - 73,603,428UniSTSRnor5.0
RGSC_v3.41169,104,833 - 69,105,037UniSTSRGSC3.4
Celera1166,732,229 - 66,732,433UniSTS
Cytogenetic Map11q22UniSTS
UniSTS:144823  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21653,055,548 - 53,056,319 (-)MAPPERmRatBN7.2
mRatBN7.21167,283,059 - 67,283,839 (+)MAPPERmRatBN7.2
Rnor_6.01170,515,693 - 70,516,472NCBIRnor6.0
Rnor_6.01656,536,808 - 56,537,578NCBIRnor6.0
Rnor_5.01656,237,674 - 56,238,444UniSTSRnor5.0
Rnor_5.01173,602,815 - 73,603,594UniSTSRnor5.0
RGSC_v3.41169,104,424 - 69,105,203UniSTSRGSC3.4
RGSC_v3.41656,616,988 - 56,617,758UniSTSRGSC3.4
Celera1650,940,124 - 50,940,894UniSTS
Celera1166,731,820 - 66,732,599UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map16q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000002435   ⟹   ENSRNOP00000002435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1180,786,087 - 80,890,877 (-)Ensembl
mRatBN7.2 Ensembl1167,282,308 - 67,385,725 (-)Ensembl
Rnor_6.0 Ensembl1170,514,949 - 70,618,347 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086955   ⟹   ENSRNOP00000071067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1180,786,818 - 80,890,877 (-)Ensembl
mRatBN7.2 Ensembl1167,281,707 - 67,385,772 (-)Ensembl
Rnor_6.0 Ensembl1170,514,750 - 70,585,053 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000156651   ⟹   ENSRNOP00000111549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1180,786,818 - 80,857,529 (-)Ensembl
RefSeq Acc Id: NM_031615   ⟹   NP_113803
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,786,818 - 80,890,877 (-)NCBI
mRatBN7.21167,281,707 - 67,385,772 (-)NCBI
Rnor_6.01170,514,340 - 70,618,403 (-)NCBI
Rnor_5.01173,597,695 - 73,704,353 (-)NCBI
RGSC_v3.41169,103,680 - 69,207,360 (-)RGD
Celera1166,730,467 - 66,835,205 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248435   ⟹   XP_006248497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,806 (-)NCBI
mRatBN7.21167,276,455 - 67,385,802 (-)NCBI
Rnor_6.01170,509,909 - 70,618,422 (-)NCBI
Rnor_5.01173,597,695 - 73,704,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088601   ⟹   XP_038944529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,807 (-)NCBI
mRatBN7.21167,276,455 - 67,385,802 (-)NCBI
RefSeq Acc Id: XM_039088602   ⟹   XP_038944530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,585 (-)NCBI
mRatBN7.21167,276,455 - 67,385,436 (-)NCBI
RefSeq Acc Id: XM_039088603   ⟹   XP_038944531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,331 (-)NCBI
mRatBN7.21167,276,455 - 67,385,326 (-)NCBI
RefSeq Acc Id: XM_039088604   ⟹   XP_038944532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,806 (-)NCBI
mRatBN7.21167,282,316 - 67,385,803 (-)NCBI
RefSeq Acc Id: XM_063270736   ⟹   XP_063126806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,876,955 (-)NCBI
RefSeq Acc Id: XM_063270737   ⟹   XP_063126807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,582 (-)NCBI
RefSeq Acc Id: XM_063270738   ⟹   XP_063126808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,331 (-)NCBI
RefSeq Acc Id: NP_113803   ⟸   NM_031615
- UniProtKB: Q62806 (UniProtKB/Swiss-Prot),   A6IRL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248497   ⟸   XM_006248435
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R3F5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002435   ⟸   ENSRNOT00000002435
Ensembl Acc Id: ENSRNOP00000071067   ⟸   ENSRNOT00000086955
RefSeq Acc Id: XP_038944529   ⟸   XM_039088601
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R3F5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944530   ⟸   XM_039088602
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R3F5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944531   ⟸   XM_039088603
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R3F5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944532   ⟸   XM_039088604
- Peptide Label: isoform X3
- UniProtKB: A0A8L2Q044 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126807   ⟸   XM_063270737
- Peptide Label: isoform X2
- UniProtKB: Q62806 (UniProtKB/Swiss-Prot),   A6IRL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126808   ⟸   XM_063270738
- Peptide Label: isoform X2
- UniProtKB: Q62806 (UniProtKB/Swiss-Prot),   A6IRL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126806   ⟸   XM_063270736
- Peptide Label: isoform X2
- UniProtKB: Q62806 (UniProtKB/Swiss-Prot),   A6IRL4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000111549   ⟸   ENSRNOT00000156651
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62806-F1-model_v2 AlphaFold Q62806 1-794 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698200
Promoter ID:EPDNEW_R8725
Type:single initiation site
Name:Zfp148_1
Description:zinc finger protein 148
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01170,618,331 - 70,618,391EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62063 AgrOrtholog
BioCyc Gene G2FUF-21129 BioCyc
Ensembl Genes ENSRNOG00000001789 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000002435 ENTREZGENE
  ENSRNOT00000086955 ENTREZGENE
  ENSRNOT00000156651 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7103428 IMAGE-MGC_LOAD
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report rno:58820 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91629 IMAGE-MGC_LOAD
NCBI Gene 58820 ENTREZGENE
PANTHER EARLY GROWTH RESPONSE 4-RELATED UniProtKB/Swiss-Prot
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot
Pfam zf-C2H2 UniProtKB/Swiss-Prot
PhenoGen Zfp148 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001789 RatGTEx
SMART ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot
TIGR TC219031
UniProt A0A8L2Q044 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R3F5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0M730_RAT UniProtKB/TrEMBL
  A6IRL4 ENTREZGENE, UniProtKB/TrEMBL
  Q62806 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Zfp148  zinc finger protein 148  Znf148    Symbol updated 1299863 APPROVED
2002-06-10 Znf148  zinc finger protein 148      Name updated 70584 APPROVED
2001-10-24 Znf148  zinc finger protein 148      Symbol updated to reflect Human and Mouse nomenclature 68913 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression mRNA ubiquitously expressed in adult tissues 61784
gene_homology aa sequence 89% identical with human ht(beta) 61784
gene_physical_interaction binds to the epidermal growth factor (EGF) response element of the gastrin gene 61784
gene_product member of the C2H2 subclass of the zinc finger family of transcription factors, characterized by the Kruppel motif 61784
gene_protein protein masses 89 kDa 61784