Znf148 (zinc finger protein 148) - Rat Genome Database

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Gene: Znf148 (zinc finger protein 148) Heterocephalus glaber
Analyze
Symbol: Znf148
Name: zinc finger protein 148
RGD ID: 18903529
Description: ENCODES a protein that exhibits double-stranded DNA binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN gamete generation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); autism spectrum disorder (ortholog); familial hypocalciuric hypercalcemia (ortholog); FOUND IN Golgi apparatus (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247311,278,242 - 1,354,063 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247311,271,478 - 1,410,047 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Znf148
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247311,278,242 - 1,354,063 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247311,271,478 - 1,410,047 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF148
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383125,225,669 - 125,375,354 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3125,225,669 - 125,375,325 (-)EnsemblGRCh38hg38GRCh38
GRCh373124,944,513 - 125,094,198 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363126,427,203 - 126,576,888 (-)NCBINCBI36Build 36hg18NCBI36
Build 343126,433,610 - 126,576,785NCBI
Celera3123,353,697 - 123,503,401 (-)NCBICelera
Cytogenetic Map3q21.2NCBI
HuRef3122,320,900 - 122,470,192 (-)NCBIHuRef
CHM1_13124,907,515 - 125,057,227 (-)NCBICHM1_1
T2T-CHM13v2.03127,952,391 - 128,102,007 (-)NCBIT2T-CHM13v2.0
Zfp148
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391633,201,145 - 33,324,273 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1633,201,206 - 33,324,733 (+)EnsemblGRCm39 Ensembl
GRCm381633,380,775 - 33,503,903 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1633,380,836 - 33,504,363 (+)EnsemblGRCm38mm10GRCm38
MGSCv371633,380,861 - 33,503,989 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361633,300,583 - 33,420,121 (+)NCBIMGSCv36mm8
Celera1633,864,197 - 33,987,285 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1623.93NCBI
Zfp148
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81180,780,865 - 80,890,877 (-)NCBIGRCr8
mRatBN7.21167,276,455 - 67,385,803 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1167,281,707 - 67,385,772 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1176,115,450 - 76,222,690 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01168,777,301 - 68,884,541 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,807,855 - 67,911,921 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,509,909 - 70,618,422 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,514,750 - 70,618,347 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,597,695 - 73,704,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41169,103,680 - 69,207,360 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11169,161,268 - 69,264,950 (-)NCBI
Celera1166,730,467 - 66,835,205 (-)NCBICelera
Cytogenetic Map11q22NCBI
Znf148
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542724,294,926 - 24,377,217 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542724,294,926 - 24,430,697 (-)NCBIChiLan1.0ChiLan1.0
ZNF148
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22123,222,162 - 123,371,893 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13123,226,939 - 123,381,474 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03122,357,670 - 122,507,142 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13129,223,025 - 129,372,404 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3129,229,690 - 129,320,554 (-)Ensemblpanpan1.1panPan2
ZNF148
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13328,229,270 - 28,347,939 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3328,233,728 - 28,348,154 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3328,251,750 - 28,370,922 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03328,461,693 - 28,581,111 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3328,466,608 - 28,581,039 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13328,259,976 - 28,379,017 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03328,304,821 - 28,423,968 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03328,923,658 - 29,043,333 (-)NCBIUU_Cfam_GSD_1.0
Znf148
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602126,098,514 - 126,181,308 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367256,962 - 83,034 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367256,968 - 89,762 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF148
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13134,969,729 - 135,089,151 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113134,968,774 - 135,093,828 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213144,512,438 - 144,621,137 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF148
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12255,467,453 - 55,609,050 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041110,703,025 - 110,849,458 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016776   ⟹   ENSHGLP00000016606
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247311,278,242 - 1,354,063 (-)Ensembl
RefSeq Acc Id: XM_004835221   ⟹   XP_004835278
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247311,278,221 - 1,410,047 (-)NCBI
RefSeq Acc Id: XM_004835222   ⟹   XP_004835279
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247311,271,478 - 1,410,047 (-)NCBI
RefSeq Acc Id: XM_013073893   ⟹   XP_012929347
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247311,271,478 - 1,410,047 (-)NCBI
RefSeq Acc Id: XM_021259642   ⟹   XP_021115301
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247311,271,478 - 1,368,510 (-)NCBI
RefSeq Acc Id: XM_021259646   ⟹   XP_021115305
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247311,271,478 - 1,409,018 (-)NCBI
RefSeq Acc Id: XM_021259655   ⟹   XP_021115314
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247311,300,744 - 1,410,047 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012929347   ⟸   XM_013073893
- Peptide Label: isoform X1
- UniProtKB: G5AQ77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004835279   ⟸   XM_004835222
- Peptide Label: isoform X1
- UniProtKB: G5AQ77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115305   ⟸   XM_021259646
- Peptide Label: isoform X1
- UniProtKB: G5AQ77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115301   ⟸   XM_021259642
- Peptide Label: isoform X1
- UniProtKB: G5AQ77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004835278   ⟸   XM_004835221
- Peptide Label: isoform X2
- UniProtKB: A0A0P6IYB1 (UniProtKB/TrEMBL),   G5AQ77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115314   ⟸   XM_021259655
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000016606   ⟸   ENSHGLT00000016776


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011875 Ensembl, ENTREZGENE
  ENSHGLG00100014922 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000016776 ENTREZGENE
  ENSHGLT00100020446 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report hgl:101703761 UniProtKB/TrEMBL
NCBI Gene Znf148 ENTREZGENE
PANTHER KRUEPPEL-LIKE FACTOR 15 UniProtKB/TrEMBL
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 281-LIKE ISOFORM X1 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0P6IYB1 ENTREZGENE, UniProtKB/TrEMBL
  G5AQ77 ENTREZGENE, UniProtKB/TrEMBL