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Gene: Abcf1 (ATP binding cassette subfamily F member 1) Rattus norvegicus

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Symbol:

Abcf1

Name:

ATP binding cassette subfamily F member 1

RGD ID:

620286

Description:

Predicted to enable ATP binding activity; ribosome binding activity; and translation activator activity. Predicted to be involved in positive regulation of translation and translational initiation. Located in ribosome. Orthologous to human ABCF1 (ATP binding cassette subfamily F member 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Abc50; ATP-binding cassette 50; ATP-binding cassette sub-family F member 1; ATP-binding cassette, sub-family F (GCN20), member 1; ATP-binding cassette, subfamily F (GCN20), member 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ABCF1 (ATP binding cassette subfamily F member 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Abcf1 (ATP-binding cassette, sub-family F member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Abcf1 (ATP binding cassette subfamily F member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ABCF1 (ATP binding cassette subfamily F member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ABCF1 (ATP binding cassette subfamily F member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Abcf1 (ATP binding cassette subfamily F member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ABCF1 (ATP binding cassette subfamily F member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ABCF1 (ATP binding cassette subfamily F member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Abcf1 (ATP binding cassette subfamily F member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Abcf1 (ATP binding cassette subfamily F member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GLRA3 (glycine receptor alpha 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ABCF1 (ATP binding cassette subfamily F member 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Abcf1 (ATP-binding cassette, sub-family F member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	abcf1 (ATP-binding cassette, sub-family F (GCN20), member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1703	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	abcf-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	abcf1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	abcf1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NEW1	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	2,807,315 - 2,820,240 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	2,807,106 - 2,820,240 (+)	Ensembl				GRCr8
mRatBN7.2	20	2,802,519 - 2,815,433 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	2,802,488 - 2,815,433 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	2,854,007 - 2,867,015 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	2,858,976 - 2,871,984 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	2,885,513 - 2,898,407 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	3,309,914 - 3,322,828 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	3,309,899 - 3,322,825 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	5,407,475 - 5,420,356 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	2,953,604 - 2,962,140 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	228,398 - 241,279 (+)	NCBI		Celera
RGSC_v3.1	20	2,953,831 - 2,962,361 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

allergic disease (ISO)

Disease Progression (ISO)

long QT syndrome (ISO)

pneumonia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-nitropyrene (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

asperentin (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Brevianamide A (ISO)

buspirone (EXP)

cadmium dichloride (EXP)

caffeine (ISO)

captan (ISO)

carbamazepine (ISO)

celecoxib (ISO)

clobetasol (ISO)

clofibrate (ISO)

coumarin (ISO)

coumestrol (ISO)

CU-O LINKAGE (ISO)

deguelin (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

doxorubicin (EXP)

endosulfan (EXP)

Enterolactone (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

folpet (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hexadecanoic acid (ISO)

indometacin (ISO)

iron(2+) sulfate (anhydrous) (ISO)

ivermectin (ISO)

lead(0) (ISO)

mycophenolic acid (ISO)

mycotoxin (ISO)

neoechinulin A (ISO)

nitrates (ISO)

paracetamol (ISO)

phenobarbital (ISO)

potassium dichromate (ISO)

resveratrol (ISO)

rifampicin (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

sodium arsenite (EXP,ISO)

sodium dichromate (ISO)

sodium fluoride (ISO)

sterigmatocystin (ISO)

tetrachloromethane (EXP)

tetrahydropalmatine (ISO)

TMC-120A (ISO)

trichloroethene (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of translation (ISO,ISS)

ribosome biogenesis (ISO,ISS)

translation (NAS)

translational initiation (ISO,ISS)

Cellular Component

cytoplasm (IEA,ISO)

cytosol (IEA,ISO)

nuclear envelope (IEA,ISO,ISS)

nucleoplasm (IEA,ISO,ISS)

ribosome (IDA)

Molecular Function

ATP binding (IBA,IEA,ISO,ISS)

ATP hydrolysis activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

ribosome binding (ISO,ISS)

translation activator activity (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	ABC50 interacts with eukaryotic initiation factor 2 and associates with the ribosome in an ATP-dependent manner.	Tyzack JK, etal., J Biol Chem 2000 Nov 3;275(44):34131-9.

Additional References at PubMed

PMID:12477932	PMID:15060004	PMID:17894550	PMID:19570978	PMID:19946888	PMID:22658674	PMID:22681889

Genomics

Comparative Map Data

Abcf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	2,807,315 - 2,820,240 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	2,807,106 - 2,820,240 (+)	Ensembl				GRCr8
mRatBN7.2	20	2,802,519 - 2,815,433 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	2,802,488 - 2,815,433 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	2,854,007 - 2,867,015 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	2,858,976 - 2,871,984 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	2,885,513 - 2,898,407 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	3,309,914 - 3,322,828 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	3,309,899 - 3,322,825 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	5,407,475 - 5,420,356 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	2,953,604 - 2,962,140 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	228,398 - 241,279 (+)	NCBI		Celera
RGSC_v3.1	20	2,953,831 - 2,962,361 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

ABCF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	30,571,442 - 30,591,522 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	30,571,393 - 30,597,179 (+)	Ensembl			hg38	GRCh38
GRCh37	6	30,539,219 - 30,559,299 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	30,647,149 - 30,667,288 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	30,647,148 - 30,667,067	NCBI
Celera	6	32,137,288 - 32,157,421 (+)	NCBI		Celera
Cytogenetic Map	6	p21.33	NCBI
HuRef	6	30,339,240 - 30,359,384 (+)	NCBI		HuRef
CHM1_1	6	30,541,266 - 30,561,417 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	30,435,621 - 30,455,699 (+)	NCBI		T2T-CHM13v2.0

Abcf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	36,267,711 - 36,280,642 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	36,267,711 - 36,280,653 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	35,956,819 - 35,969,750 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	35,956,819 - 35,969,761 (-)	Ensembl			mm10	GRCm38
MGSCv37	17	36,093,764 - 36,106,695 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	35,564,872 - 35,577,803 (-)	NCBI		MGSCv36	mm8
Celera	17	39,470,344 - 39,483,322 (-)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	18.8	NCBI

Abcf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955583	600,398 - 606,820 (+)	Ensembl
ChiLan1.0	NW_004955583	600,381 - 607,211 (+)	NCBI	ChiLan1.0	ChiLan1.0

ABCF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	45,129,737 - 45,149,503 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	41,092,823 - 41,112,558 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	30,314,216 - 30,333,912 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	31,184,720 - 31,203,789 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	31,184,831 - 31,203,059 (+)	Ensembl			panPan2	panpan1.1

ABCF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	396,947 - 410,951 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	401,118 - 411,179 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	527,719 - 549,348 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	533,984 - 555,482 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	540,881 - 555,480 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	390,728 - 412,380 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	460,059 - 481,701 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	529,843 - 551,482 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Abcf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	33,882,849 - 33,899,757 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936837	248,167 - 264,998 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936837	248,133 - 265,016 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABCF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	23,126,283 - 23,143,994 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	23,126,255 - 23,144,030 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	26,795,857 - 26,813,632 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ABCF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	41,866,152 - 41,885,673 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	41,866,062 - 41,884,972 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	30,235,086 - 30,259,243 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Abcf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	25,098,182 - 25,110,092 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	25,097,202 - 25,110,164 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Abcf1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	9,149,234 - 9,162,109 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Abcf1
141 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	431
Count of miRNA genes:	207
Interacting mature miRNAs:	258
Transcripts:	ENSRNOT00000001049
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2306850	Pia40	Pristane induced arthritis QTL 40		0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1533200	5306452	Rat
61474	Eae1	Experimental allergic encephalomyelitis QTL 1	3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	20	1	6693431	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26128279	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24164241	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
70154	Insul2	Insulin level QTL 2	3.75		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	6693431	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
724519	Bp144	Blood pressure QTL 144		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	20	1	3629303	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1	14100378	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat

Markers in Region

D20Yum34

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	2,807,242 - 2,807,408 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	3,314,639 - 3,314,804	NCBI	Rnor6.0
Rnor_5.0	20	5,412,167 - 5,412,332	UniSTS	Rnor5.0
RGSC_v3.4	20	2,953,951 - 2,954,116	UniSTS	RGSC3.4
Celera	20	233,090 - 233,255	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH128459

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	2,815,085 - 2,815,274 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	3,322,481 - 3,322,669	NCBI	Rnor6.0
Rnor_5.0	20	5,420,009 - 5,420,197	UniSTS	Rnor5.0
RGSC_v3.4	20	2,961,792 - 2,961,981	UniSTS	RGSC3.4
Celera	20	240,932 - 241,120	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH140082

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	2,810,160 - 2,810,370 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	3,317,557 - 3,317,766	NCBI	Rnor6.0
Rnor_5.0	20	5,415,085 - 5,415,294	UniSTS	Rnor5.0
RGSC_v3.4	20	2,956,869 - 2,957,078	UniSTS	RGSC3.4
Celera	20	236,008 - 236,217	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF293383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP495802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX883048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB801303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK356298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV114142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV771702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV773343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001049 ⟹ ENSRNOP00000001049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	2,807,106 - 2,820,233 (+)	Ensembl
mRatBN7.2 Ensembl	20	2,802,488 - 2,815,426 (+)	Ensembl
Rnor_6.0 Ensembl	20	3,309,899 - 3,322,825 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078355

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,317,247 - 3,317,854 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081403

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,309,947 - 3,316,427 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095040 ⟹ ENSRNOP00000090778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,802,584 - 2,815,433 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113889 ⟹ ENSRNOP00000087295

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	2,807,392 - 2,820,240 (+)	Ensembl
mRatBN7.2 Ensembl	20	2,802,560 - 2,815,426 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119600 ⟹ ENSRNOP00000085554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	2,802,551 - 2,815,427 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120548 ⟹ ENSRNOP00000098190

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	2,807,347 - 2,820,233 (+)	Ensembl

RefSeq Acc Id:

NM_001109883 ⟹ NP_001103353

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	2,807,359 - 2,820,240 (+)	NCBI
mRatBN7.2	20	2,802,551 - 2,815,433 (+)	NCBI
Rnor_6.0	20	3,309,947 - 3,322,828 (+)	NCBI
Rnor_5.0	20	5,407,475 - 5,420,356 (+)	NCBI
RGSC_v3.4	20	2,953,604 - 2,962,140 (+)	RGD
Celera	20	228,398 - 241,279 (+)	RGD

Sequence:

show sequence

GGCGCCTTCGGAGGACTCGTAACTGCCGCCGCGATGCCGAAGGGTCCCAAGCAGCAGCCGCCCG
AGCCCGAGTGGATCGGGGACGGCGAAGGCACGAGCCCCGCGGACAAAGTAGTGAAGAAAGGCAA
AAAAGACAAGAAGACCAAAAAGACGTTCTTTGAGGAACTGGCAGTGGAAGACAAGCAAGCCGGG
GAAGAGGAGAAACTGCAGAAGGAGAAGGAGCAGCAGCAGCAGCAGCAGCAACAGAAGAAAAAGC
GAGACACCAGGAAAGGTCGTCGGAAGAAGGATGTGGATGATGATGATGATGGTGATGAGAGAGT
GCTCATGGAGCGCCTTAAGCAGCTGTCTGTGCCAGCCAGTGATGAGGAAGATGAGGTACCTGTC
CCCGTGCCCCGAGGACGGAAGAAGGCAAAGGGCGGAAATGTTTTTGAAGCCCTGATTCAGGATG
AAAGTGAGGAGGAAAAAGAAGAGGAGGAAGAAAAGCCTGTTCTCAAGCCTGCCAAGCCAGAGAA
GAATCGCATCAATAAGGCCGTGGCTGAGGAGCCTCCTGGGCTCCGAAATAAAAAGGGAAAGGAG
GAGAAATCGAAAGGGAAAGCCAAGAATAAACCGTCTGCTACAGACAGTGAAGGGGAAGATGATG
AGGACATGACTAAAGAAAAGGAGCCTCCCAGGCCAGGGAAGGACAAAGACAAAAAGGGAGCTGA
GCAGGGTTCAGAGGAAGAGAAAGAAGAGAAGGAGGGGGAGGTGAAGGCGAATGATCCCTATGCC
CACCTTAGCAAAAAGGAAAAGAAAAAGCTGAAGAAACAGATGGATTATGAACGCCAGGTGGAAT
CATTAAAGGCAGCTAATGCTGCAGAAAATGACTTCTCTGTGTCCCAGGCAGAGGTGTCTTCCCG
CCAGGCAATGTTAGAAAATGCATCTGACATTAAGTTGGAAAAGTTCAGCATCTCGGCCCACGGC
AAGGAGCTGTTTGTCAATGCTGACCTGTACATCGTGGCTGGCCGCCGCTATGGGCTGGTGGGGC
CCAACGGCAAGGGCAAGACCACACTTCTGAAGCACATTGCCAACCGTGCCCTGAGTATCCCCCC
TAACATTGATGTGCTGCTGTGCGAGCAGGAGGTGGTGGCTGATGAAACACCAGCCGTGCAAGCT
GTTCTTCGTGCAGACACAAAGCGACTGAGGTTGCTAGAGGAGGAGAAACGGCTTCAGGGACAGC
TGGAGCAGGGGGATGATACTGCCGCTGAGAAACTAGAAAAGGTATATGAGGAACTGCGAGCTAC
TGGGGCAGCAGCTGCAGAGGCCAAGGCACGGCGGATCCTGGCTGGCTTGGGCTTTGACCCTGAG
ATGCAGAATCGGCCCACACAGAAGTTCTCTGGGGGTTGGCGAATGCGTGTCTCCCTGGCCAGGG
CACTGTTCATGGAACCCACACTGCTGATGCTGGACGAGCCTACCAATCACCTGGACCTCAATGC
CGTCATCTGGCTCAATAACTACCTTCAGGGCTGGAGGAAGACACTGCTGATCGTCTCCCACGAC
CAGGGCTTTCTGGATGATGTCTGCACCGATATCATCCACCTGGACACTCAGCGGCTCCATTACT
ACAGGGGCAATTACATGACCTTCAAGAAGATGTACCAGCAGAAGCAGAAGGAGCTGCTGAAGCA
GTACGAGAAACAGGAGAAGAAGCTGAAGGAGCTGAAGGCTGGGGGCAAGTCCACCAAGCAAGCG
GAAAAGCAAACAAAGGAAGTCCTGACTCGAAAACAGCAGAAATGCCGAAGGAAAAACCAGGATG
AGGAGTCTCAGGATCCCCCTGAGCTTCTGAAGCGCCCCAGGGAGTACACTGTGCGATTCACCTT
CCCAGACCCCCCACCTCTCAGCCCACCTGTCCTGGGGCTGCATGGTGTGACGTTTGGCTACGAG
GGGCAGAAGCCACTCTTTAAGAACCTGGATTTCGGCATCGACATGGACTCCCGAATTTGCATTG
TGGGTCCCAATGGTGTGGGGAAGAGCACACTACTCCTGTTGCTGACTGGCAAGCTGACACCGAC
CAACGGGGAAATGAGGAAGAACCATCGGCTGAAAATCGGCTTCTTTAACCAGCAGTATGCAGAG
CAGCTGCACATGGAGGAGACGCCCACCGAGTACCTGCAGCGGGGCTTCAACCTGCCCTATCAGG
ATGCCCGGAAGTGCTTGGGCCGCTTCGGCCTGGAGAGCCACGCCCACACCATCCAGATCTGCAA
ACTCTCGGGCGGGCAGAAAGCCCGAGTTGTGTTTGCGGAGCTGGCCTGTCGGGAGCCTGATGTC
CTCATCTTGGATGAACCAACCAATAACTTGGACATAGAGTCCATCGATGCCCTGGGAGAGGCCA
TCAACGAGTACAAGGGAGCTGTGATCGTTGTCAGCCATGATGCACGCCTCATCACAGAAACCAA
CTGCCAGTTGTGGGTCGTGGAGGAGCAGAGTGTCAGTCAAATTGATGGTGACTTTGATGACTAC
AAGCGAGAGGTGTTGGAGGCCCTGGGTGAAGTCATGGTCAACCGACCTCGGGATTGAGTTCTTC
TGGAAGCCTGCTGTGACAAGCTCCTATGGCTGGAATCTAGGCCATCTCTTTATCCACCAAGAAG
CCTGCTGTGTCTGCTGCCAGCTGCAGCCACATGGGCCAAGAAGGTGGCGTGTTGCCTTGATGTG
TGTGAGAGCATCCTTCCATGTGAACTGTGTCCTTCTCACTGAAGGACTGTGTTCCCTTGAGGTA
ACTGAGCTGGCTTGCCCACACTGGCTTAGTCTCTATTCAGACAGGTGACCTTTGCTGTGGTGGG
TTCCCCTCAGACCTAATTAAGGTGGCCTCTTGTCTCGAGACTTTTGCCACTCAGAACTGACCCT
GGTCCCTCCTTTTGGAAGGGTACTACTGACTCGCTGACATAAACAGCCAGAACCTCAGGGCTGG
AGGCAAGTGTCTGAGACCTGTACTGTCTCACCCAAGATCTGGTGCCTGTGATCCCTTGTCTCAT
GGGGACTTGAGGGCAGGAAAGGAAGCTCCTGAACTGAAGTCTCCTTTACAAGGGAGGAATAAAG
GAGTGGGTGCTGATACATGT

hide sequence

RefSeq Acc Id:

XM_017601783 ⟹ XP_017457272

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	2,807,315 - 2,820,237 (+)	NCBI
mRatBN7.2	20	2,802,519 - 2,815,430 (+)	NCBI
Rnor_6.0	20	3,309,914 - 3,322,825 (+)	NCBI

Sequence:

show sequence

GGCCCCAAGCCGCCGGAAGCGGAAACAGCACCCGGCGCCTTCGGAGGACTCGTAACTGCCGCCG
CGATGCCGAAGGGTCCCAAGCAGCAGCCGCCCGAGCCCGAGTGGATCGGGGACGGCGAAGGCAC
GAGCCCCGCGGTTCTTTGAGGAACTGGCAGTGGAAGACAAGCAAGCCGGGGAAGAGGAGAAACT
GCAGAAGGAGAAGGAGCAGCAGCAGCAGCAGCAGCAACAGAAGAAAAAGCGAGACACCAGGAAA
GGTCGTCGGAAGAAGGATGTGGATGATGATGATGATGGTGATGAGAGAGTGCTCATGGAGCGCC
TTAAGCAGCTGTCTGTGCCAGCCAGTGATGAGGAAGATGAGGTACCTGTCCCCGTGCCCCGAGG
ACGGAAGAAGGCAAAGGGCGGAAATGTTTTTGAAGCCCTGATTCAGGATGAAAGTGAGGAGGAA
AAAGAAGAGGAGGAAGAAAAGCCTGTTCTCAAGCCTGCCAAGCCAGAGAAGAATCGCATCAATA
AGGCCGTGGCTGAGGAGCCTCCTGGGCTCCGAAATAAAAAGGGAAAGGAGGAGAAATCGAAAGG
GAAAGCCAAGAATAAACCGTCTGCTACAGACAGTGAAGGGGAAGATGATGAGGACATGACTAAA
GAAAAGGAGCCTCCCAGGCCAGGGAAGGACAAAGACAAAAAGGGAGCTGAGCAGGGTTCAGAGG
AAGAGAAAGAAGAGAAGGAGGGGGAGGTGAAGGCGAATGATCCCTATGCCCACCTTAGCAAAAA
GGAAAAGAAAAAGCTGAAGAAACAGATGGATTATGAACGCCAGGTGGAATCATTAAAGGCAGCT
AATGCTGCAGAAAATGACTTCTCTGTGTCCCAGGCAGAGGTGTCTTCCCGCCAGGCAATGTTAG
AAAATGCATCTGACATTAAGTTGGAAAAGTTCAGCATCTCGGCCCACGGCAAGGAGCTGTTTGT
CAATGCTGACCTGTACATCGTGGCTGGCCGCCGCTATGGGCTGGTGGGGCCCAACGGCAAGGGC
AAGACCACACTTCTGAAGCACATTGCCAACCGTGCCCTGAGTATCCCCCCTAACATTGATGTGC
TGCTGTGCGAGCAGGAGGTGGTGGCTGATGAAACACCAGCCGTGCAAGCTGTTCTTCGTGCAGA
CACAAAGCGACTGAGGTTGCTAGAGGAGGAGAAACGGCTTCAGGGACAGCTGGAGCAGGGGGAT
GATACTGCCGCTGAGAAACTAGAAAAGGTATATGAGGAACTGCGAGCTACTGGGGCAGCAGCTG
CAGAGGCCAAGGCACGGCGGATCCTGGCTGGCTTGGGCTTTGACCCTGAGATGCAGAATCGGCC
CACACAGAAGTTCTCTGGGGGTTGGCGAATGCGTGTCTCCCTGGCCAGGGCACTGTTCATGGAA
CCCACACTGCTGATGCTGGACGAGCCTACCAATCACCTGGACCTCAATGCCGTCATCTGGCTCA
ATAACTACCTTCAGGGCTGGAGGAAGACACTGCTGATCGTCTCCCACGACCAGGGCTTTCTGGA
TGATGTCTGCACCGATATCATCCACCTGGACACTCAGCGGCTCCATTACTACAGGGGCAATTAC
ATGACCTTCAAGAAGATGTACCAGCAGAAGCAGAAGGAGCTGCTGAAGCAGTACGAGAAACAGG
AGAAGAAGCTGAAGGAGCTGAAGGCTGGGGGCAAGTCCACCAAGCAAGCGGAAAAGCAAACAAA
GGAAGTCCTGACTCGAAAACAGCAGAAATGCCGAAGGAAAAACCAGGATGAGGAGTCTCAGGAT
CCCCCTGAGCTTCTGAAGCGCCCCAGGGAGTACACTGTGCGATTCACCTTCCCAGACCCCCCAC
CTCTCAGCCCACCTGTCCTGGGGCTGCATGGTGTGACGTTTGGCTACGAGGGGCAGAAGCCACT
CTTTAAGAACCTGGATTTCGGCATCGACATGGACTCCCGAATTTGCATTGTGGGTCCCAATGGT
GTGGGGAAGAGCACACTACTCCTGTTGCTGACTGGCAAGCTGACACCGACCAACGGGGAAATGA
GGAAGAACCATCGGCTGAAAATCGGCTTCTTTAACCAGCAGTATGCAGAGCAGCTGCACATGGA
GGAGACGCCCACCGAGTACCTGCAGCGGGGCTTCAACCTGCCCTATCAGGATGCCCGGAAGTGC
TTGGGCCGCTTCGGCCTGGAGAGCCACGCCCACACCATCCAGATCTGCAAACTCTCGGGCGGGC
AGAAAGCCCGAGTTGTGTTTGCGGAGCTGGCCTGTCGGGAGCCTGATGTCCTCATCTTGGATGA
ACCAACCAATAACTTGGACATAGAGTCCATCGATGCCCTGGGAGAGGCCATCAACGAGTACAAG
GGAGCTGTGATCGTTGTCAGCCATGATGCACGCCTCATCACAGAAACCAACTGCCAGTTGTGGG
TCGTGGAGGAGCAGAGTGTCAGTCAAATTGATGGTGACTTTGATGACTACAAGCGAGAGGTGTT
GGAGGCCCTGGGTGAAGTCATGGTCAACCGACCTCGGGATTGAGTTCTTCTGGAAGCCTGCTGT
GACAAGCTCCTATGGCTGGAATCTAGGCCATCTCTTTATCCACCAAGAAGCCTGCTGTGTCTGC
TGCCAGCTGCAGCCACATGGGCCAAGAAGGTGGCGTGTTGCCTTGATGTGTGTGAGAGCATCCT
TCCATGTGAACTGTGTCCTTCTCACTGAAGGACTGTGTTCCCTTGAGGTAACTGAGCTGGCTTG
CCCACACTGGCTTAGTCTCTATTCAGACAGGTGACCTTTGCTGTGGTGGGTTCCCCTCAGACCT
AATTAAGGTGGCCTCTTGTCTCGAGACTTTTGCCACTCAGAACTGACCCTGGTCCCTCCTTTTG
GAAGGGTACTACTGACTCGCTGACATAAACAGCCAGAACCTCAGGGCTGGAGGCAAGTGTCTGA
GACCTGTACTGTCTCACCCAAGATCTGGTGCCTGTGATCCCTTGTCTCATGGGGACTTGAGGGC
AGGAAAGGAAGCTCCTGAACTGAAGTCTCCTTTACAAGGGAGGAATAAAGGAGTGGGTGCTGAT
ACA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001103353	(Get FASTA)	NCBI Sequence Viewer
	XP_017457272	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG23960	(Get FASTA)	NCBI Sequence Viewer
	CAE84039	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001049
GenBank Protein	Q6MG08	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001103353 ⟸ NM_001109883

- UniProtKB:

Q9ERQ2 (UniProtKB/Swiss-Prot), Q6MG08 (UniProtKB/Swiss-Prot), A0A8L2PZQ3 (UniProtKB/TrEMBL), A6KT63 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPKGPKQQPPEPEWIGDGEGTSPADKVVKKGKKDKKTKKTFFEELAVEDKQAGEEEKLQKEKEQ
QQQQQQQKKKRDTRKGRRKKDVDDDDDGDERVLMERLKQLSVPASDEEDEVPVPVPRGRKKAKG
GNVFEALIQDESEEEKEEEEEKPVLKPAKPEKNRINKAVAEEPPGLRNKKGKEEKSKGKAKNKP
SATDSEGEDDEDMTKEKEPPRPGKDKDKKGAEQGSEEEKEEKEGEVKANDPYAHLSKKEKKKLK
KQMDYERQVESLKAANAAENDFSVSQAEVSSRQAMLENASDIKLEKFSISAHGKELFVNADLYI
VAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVADETPAVQAVLRADTKRLRL
LEEEKRLQGQLEQGDDTAAEKLEKVYEELRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSG
GWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDI
IHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKSTKQAEKQTKEVLTRK
QQKCRRKNQDEESQDPPELLKRPREYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKPLFKNLDF
GIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEY
LQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLD
IESIDALGEAINEYKGAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEV
MVNRPRD

hide sequence

RefSeq Acc Id:	XP_017457272 ⟸ XM_017601783
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2PZQ3 (UniProtKB/TrEMBL), A6KT63 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERLKQLSVPASDEEDEVPVPVPRGRKKAKGGNVFEALIQDESEEEKEEEEEKPVLKPAKPEKN RINKAVAEEPPGLRNKKGKEEKSKGKAKNKPSATDSEGEDDEDMTKEKEPPRPGKDKDKKGAEQ GSEEEKEEKEGEVKANDPYAHLSKKEKKKLKKQMDYERQVESLKAANAAENDFSVSQAEVSSRQ AMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPN IDVLLCEQEVVADETPAVQAVLRADTKRLRLLEEEKRLQGQLEQGDDTAAEKLEKVYEELRATG AAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAV IWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQY EKQEKKLKELKAGGKSTKQAEKQTKEVLTRKQQKCRRKNQDEESQDPPELLKRPREYTVRFTFP DPPPLSPPVLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTN GEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKL SGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITETNC QLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVNRPRD hide sequence

Ensembl Acc Id:

ENSRNOP00000001049 ⟸ ENSRNOT00000001049

Ensembl Acc Id:

ENSRNOP00000085554 ⟸ ENSRNOT00000119600

Ensembl Acc Id:

ENSRNOP00000090778 ⟸ ENSRNOT00000095040

Ensembl Acc Id:

ENSRNOP00000087295 ⟸ ENSRNOT00000113889

Ensembl Acc Id:

ENSRNOP00000098190 ⟸ ENSRNOT00000120548

Protein Domains

ABC transporter

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6MG08-F1-model_v2	AlphaFold	Q6MG08	1-839	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701292

Promoter ID:

EPDNEW_R11816

Type:

initiation region

Name:

Abcf1_1

Description:

ATP binding cassette subfamily F member 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	3,309,943 - 3,310,003	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620286	AgrOrtholog
BioCyc Gene	G2FUF-4790	BioCyc
Ensembl Genes	ENSRNOG00000000799	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000001049	ENTREZGENE
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7460278	IMAGE-MGC_LOAD
InterPro	AAA+_ATPase	UniProtKB/Swiss-Prot
	ABC_transporter-like	UniProtKB/Swiss-Prot
	ABC_transporter_CS	UniProtKB/Swiss-Prot
	ABCF_EF3_subfamily	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
KEGG Report	rno:85493	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116244	IMAGE-MGC_LOAD
NCBI Gene	85493	ENTREZGENE
PANTHER	ATP-BINDING CASSETTE SUB-FAMILY F MEMBER 1	UniProtKB/Swiss-Prot
	ATP-BINDING TRANSPORT PROTEIN-RELATED	UniProtKB/Swiss-Prot
Pfam	ABC_tran	UniProtKB/Swiss-Prot
PhenoGen	Abcf1	PhenoGen
PROSITE	ABC_TRANSPORTER_1	UniProtKB/Swiss-Prot
	ABC_TRANSPORTER_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000000799	RatGTEx
SMART	AAA	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	A0A8I6A7P9_RAT	UniProtKB/TrEMBL
	A0A8L2PZQ3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LCB9_RAT	UniProtKB/TrEMBL
	A6KT63	ENTREZGENE, UniProtKB/TrEMBL
	ABCF1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q9ERQ2	ENTREZGENE
UniProt Secondary	Q9ERQ2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-09	Abcf1	ATP binding cassette subfamily F member 1	Abcf1	ATP-binding cassette, subfamily F (GCN20), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-11-16	Abcf1	ATP-binding cassette, subfamily F (GCN20), member 1	Abcf1	ATP-binding cassette, sub-family F (GCN20), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-02-26	Abcf1	ATP-binding cassette, sub-family F (GCN20), member 1			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Abcf1	ATP-binding cassette, sub-family F (GCN20), member 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_process	no effect on eIF2 binding to GDP but greatly promoted the association of methionyl-tRNA with the factor	631944
gene_protein	110 kDa	631944

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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