ABCF1 (ATP binding cassette subfamily F member 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ABCF1 (ATP binding cassette subfamily F member 1) Canis lupus familiaris
Analyze
Symbol: ABCF1
Name: ATP binding cassette subfamily F member 1
RGD ID: 12434907
Description: ENCODES a protein that exhibits ribosome binding (ortholog); translation activator activity (ortholog); INVOLVED IN positive regulation of translation (ortholog); ribosome biogenesis (ortholog); translational initiation (ortholog); ASSOCIATED WITH allergic disease (ortholog); Disease Progression (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nuclear envelope (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family F member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112396,947 - 410,951 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12401,118 - 411,179 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12527,719 - 549,348 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012533,984 - 555,482 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12540,881 - 555,480 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112390,728 - 412,380 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012460,059 - 481,701 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012529,843 - 551,482 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ABCF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112396,947 - 410,951 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12401,118 - 411,179 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12527,719 - 549,348 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012533,984 - 555,482 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12540,881 - 555,480 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112390,728 - 412,380 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012460,059 - 481,701 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012529,843 - 551,482 (+)NCBIUU_Cfam_GSD_1.0
ABCF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,571,442 - 30,591,522 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,571,393 - 30,597,179 (+)EnsemblGRCh38hg38GRCh38
GRCh37630,539,219 - 30,559,299 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,647,149 - 30,667,288 (+)NCBINCBI36Build 36hg18NCBI36
Build 34630,647,148 - 30,667,067NCBI
Celera632,137,288 - 32,157,421 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,339,240 - 30,359,384 (+)NCBIHuRef
CHM1_1630,541,266 - 30,561,417 (+)NCBICHM1_1
T2T-CHM13v2.0630,435,621 - 30,455,699 (+)NCBIT2T-CHM13v2.0
Abcf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,267,711 - 36,280,642 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1736,267,711 - 36,280,653 (-)EnsemblGRCm39 Ensembl
GRCm381735,956,819 - 35,969,750 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,956,819 - 35,969,761 (-)EnsemblGRCm38mm10GRCm38
MGSCv371736,093,764 - 36,106,695 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,564,872 - 35,577,803 (-)NCBIMGSCv36mm8
Celera1739,470,344 - 39,483,322 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.8NCBI
Abcf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8202,807,315 - 2,820,240 (+)NCBIGRCr8
mRatBN7.2202,802,519 - 2,815,433 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl202,802,488 - 2,815,433 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx202,854,007 - 2,867,015 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0202,858,976 - 2,871,984 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0202,885,513 - 2,898,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,309,914 - 3,322,828 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,309,899 - 3,322,825 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,407,475 - 5,420,356 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4202,953,604 - 2,962,140 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1202,953,831 - 2,962,361 (+)NCBI
Celera20228,398 - 241,279 (+)NCBICelera
Cytogenetic Map20p12NCBI
Abcf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583600,398 - 606,820 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955583600,381 - 607,211 (+)NCBIChiLan1.0ChiLan1.0
ABCF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,129,737 - 45,149,503 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,092,823 - 41,112,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,314,216 - 30,333,912 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,184,720 - 31,203,789 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,184,831 - 31,203,059 (+)Ensemblpanpan1.1panPan2
Abcf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,882,849 - 33,899,757 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936837248,133 - 265,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,126,283 - 23,145,006 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,126,255 - 23,144,030 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2726,795,857 - 26,813,632 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103221832
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,866,152 - 41,885,673 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,866,062 - 41,884,972 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604430,235,086 - 30,259,243 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abcf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,098,182 - 25,110,092 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475425,097,202 - 25,110,164 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ABCF1
170 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038491244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038491248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038553413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038617306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038679279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038682898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_532056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000046193   ⟹   ENSCAFP00000037983
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl12401,118 - 411,179 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845012597   ⟹   ENSCAFP00845009832
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl12540,881 - 555,013 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845012626   ⟹   ENSCAFP00845009854
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl12540,889 - 555,480 (+)Ensembl
RefSeq Acc Id: XM_038491244   ⟹   XP_038347172
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.112397,617 - 412,380 (+)NCBI
RefSeq Acc Id: XM_038491245   ⟹   XP_038347173
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.112397,616 - 411,633 (+)NCBI
RefSeq Acc Id: XM_038491246   ⟹   XP_038347174
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.112397,617 - 412,380 (+)NCBI
RefSeq Acc Id: XM_038491247   ⟹   XP_038347175
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.112390,728 - 412,380 (+)NCBI
RefSeq Acc Id: XM_038491248   ⟹   XP_038347176
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.112397,617 - 412,380 (+)NCBI
RefSeq Acc Id: XM_038553409   ⟹   XP_038409337
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.012536,734 - 551,482 (+)NCBI
RefSeq Acc Id: XM_038553410   ⟹   XP_038409338
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.012536,733 - 550,735 (+)NCBI
RefSeq Acc Id: XM_038553411   ⟹   XP_038409339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.012536,734 - 551,482 (+)NCBI
RefSeq Acc Id: XM_038553412   ⟹   XP_038409340
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.012529,843 - 551,482 (+)NCBI
RefSeq Acc Id: XM_038553413   ⟹   XP_038409341
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.012536,734 - 551,482 (+)NCBI
RefSeq Acc Id: XM_038617302   ⟹   XP_038473230
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.012466,944 - 481,701 (+)NCBI
RefSeq Acc Id: XM_038617303   ⟹   XP_038473231
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.012466,942 - 480,954 (+)NCBI
RefSeq Acc Id: XM_038617304   ⟹   XP_038473232
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.012466,944 - 481,701 (+)NCBI
RefSeq Acc Id: XM_038617305   ⟹   XP_038473233
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.012460,059 - 481,701 (+)NCBI
RefSeq Acc Id: XM_038617306   ⟹   XP_038473234
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.012466,943 - 481,701 (+)NCBI
RefSeq Acc Id: XM_038679246   ⟹   XP_038535174
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha12534,591 - 549,348 (+)NCBI
RefSeq Acc Id: XM_038679255   ⟹   XP_038535183
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha12534,590 - 548,601 (+)NCBI
RefSeq Acc Id: XM_038679260   ⟹   XP_038535188
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha12534,591 - 549,348 (+)NCBI
RefSeq Acc Id: XM_038679269   ⟹   XP_038535197
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha12527,719 - 549,348 (+)NCBI
RefSeq Acc Id: XM_038679279   ⟹   XP_038535207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha12534,591 - 549,348 (+)NCBI
RefSeq Acc Id: XM_038682894   ⟹   XP_038538822
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.012540,839 - 555,482 (+)NCBI
RefSeq Acc Id: XM_038682895   ⟹   XP_038538823
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.012540,838 - 554,861 (+)NCBI
RefSeq Acc Id: XM_038682896   ⟹   XP_038538824
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.012540,839 - 555,482 (+)NCBI
RefSeq Acc Id: XM_038682897   ⟹   XP_038538825
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.012533,984 - 555,482 (+)NCBI
RefSeq Acc Id: XM_038682898   ⟹   XP_038538826
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.012540,839 - 555,482 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038347172 (Get FASTA)   NCBI Sequence Viewer  
  XP_038347173 (Get FASTA)   NCBI Sequence Viewer  
  XP_038347174 (Get FASTA)   NCBI Sequence Viewer  
  XP_038347175 (Get FASTA)   NCBI Sequence Viewer  
  XP_038347176 (Get FASTA)   NCBI Sequence Viewer  
  XP_038409337 (Get FASTA)   NCBI Sequence Viewer  
  XP_038409338 (Get FASTA)   NCBI Sequence Viewer  
  XP_038409339 (Get FASTA)   NCBI Sequence Viewer  
  XP_038409340 (Get FASTA)   NCBI Sequence Viewer  
  XP_038409341 (Get FASTA)   NCBI Sequence Viewer  
  XP_038473230 (Get FASTA)   NCBI Sequence Viewer  
  XP_038473231 (Get FASTA)   NCBI Sequence Viewer  
  XP_038473232 (Get FASTA)   NCBI Sequence Viewer  
  XP_038473233 (Get FASTA)   NCBI Sequence Viewer  
  XP_038473234 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535174 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535183 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535188 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535197 (Get FASTA)   NCBI Sequence Viewer  
  XP_038535207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038538822 (Get FASTA)   NCBI Sequence Viewer  
  XP_038538823 (Get FASTA)   NCBI Sequence Viewer  
  XP_038538824 (Get FASTA)   NCBI Sequence Viewer  
  XP_038538825 (Get FASTA)   NCBI Sequence Viewer  
  XP_038538826 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000037983.2
  ENSCAFP00000073503.1
  ENSCAFP00030012617.1
  ENSCAFP00030012815.1
  ENSCAFP00030012876.1
  ENSCAFP00040023100.1
  ENSCAFP00040023283.1
  ENSCAFP00040023335.1
  ENSCAFP00845009832
  ENSCAFP00845009832.1
  ENSCAFP00845009854
  ENSCAFP00845009854.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000037983   ⟸   ENSCAFT00000046193
RefSeq Acc Id: XP_038347175   ⟸   XM_038491247
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038347173   ⟸   XM_038491245
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038347172   ⟸   XM_038491244
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038347176   ⟸   XM_038491248
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038347174   ⟸   XM_038491246
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038473233   ⟸   XM_038617305
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038473231   ⟸   XM_038617303
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038473234   ⟸   XM_038617306
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038473230   ⟸   XM_038617302
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038473232   ⟸   XM_038617304
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038538825   ⟸   XM_038682897
- Peptide Label: isoform X4
- UniProtKB: A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538823   ⟸   XM_038682895
- Peptide Label: isoform X2
- UniProtKB: A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538822   ⟸   XM_038682894
- Peptide Label: isoform X1
- UniProtKB: A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538826   ⟸   XM_038682898
- Peptide Label: isoform X5
- UniProtKB: A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038538824   ⟸   XM_038682896
- Peptide Label: isoform X3
- UniProtKB: A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535197   ⟸   XM_038679269
- Peptide Label: isoform X4
- UniProtKB: A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535183   ⟸   XM_038679255
- Peptide Label: isoform X2
- UniProtKB: A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535174   ⟸   XM_038679246
- Peptide Label: isoform X1
- UniProtKB: A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535207   ⟸   XM_038679279
- Peptide Label: isoform X5
- UniProtKB: A0A8P0PQL6 (UniProtKB/TrEMBL),   A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038535188   ⟸   XM_038679260
- Peptide Label: isoform X3
- UniProtKB: A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409340   ⟸   XM_038553412
- Peptide Label: isoform X4
- UniProtKB: A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409338   ⟸   XM_038553410
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KW29 (UniProtKB/TrEMBL),   A0A8C0MNP2 (UniProtKB/TrEMBL),   A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409337   ⟸   XM_038553409
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KW29 (UniProtKB/TrEMBL),   A0A8C0MNP2 (UniProtKB/TrEMBL),   A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409341   ⟸   XM_038553413
- Peptide Label: isoform X5
- UniProtKB: A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409339   ⟸   XM_038553411
- Peptide Label: isoform X3
- UniProtKB: A0A8C0SL46 (UniProtKB/TrEMBL),   A0A8I3N7G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845009854   ⟸   ENSCAFT00845012626
RefSeq Acc Id: ENSCAFP00845009832   ⟸   ENSCAFT00845012597
Protein Domains
ABC transporter

Promoters
RGD ID:13685325
Promoter ID:EPDNEW_C3392
Type:initiation region
Name:ABCF1_1
Description:ATP binding cassette subfamily F member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.112397,004 - 397,064EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000030478 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007868 UniProtKB/TrEMBL
  ENSCAFG00040014415 UniProtKB/TrEMBL
  ENSCAFG00845007092 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000046193.3 UniProtKB/TrEMBL
  ENSCAFT00000100181.1 UniProtKB/TrEMBL
  ENSCAFT00030014468.1 UniProtKB/TrEMBL
  ENSCAFT00030014692.1 UniProtKB/TrEMBL
  ENSCAFT00030014758.1 UniProtKB/TrEMBL
  ENSCAFT00040026598.1 UniProtKB/TrEMBL
  ENSCAFT00040026795.1 UniProtKB/TrEMBL
  ENSCAFT00040026853.1 UniProtKB/TrEMBL
  ENSCAFT00845012597 ENTREZGENE
  ENSCAFT00845012597.1 UniProtKB/TrEMBL
  ENSCAFT00845012626 ENTREZGENE
  ENSCAFT00845012626.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC_transporter-like_ATP-bd UniProtKB/TrEMBL
  ABC_transporter-like_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene ABCF1 ENTREZGENE
PANTHER ATP-BINDING CASSETTE SUB-FAMILY F MEMBER 1 UniProtKB/TrEMBL
  ATP-BINDING TRANSPORT PROTEIN-RELATED UniProtKB/TrEMBL
Pfam ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0KW29 ENTREZGENE
  A0A8C0MJU3_CANLF UniProtKB/TrEMBL
  A0A8C0MNP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SL46 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N4W8_CANLF UniProtKB/TrEMBL
  A0A8I3N7G8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NPP6_CANLF UniProtKB/TrEMBL
  A0A8P0PQL6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:37450 ENTREZGENE