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Gene: Prelp (proline and arginine rich end leucine rich repeat protein) Rattus norvegicus

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Symbol:

Prelp

Name:

proline and arginine rich end leucine rich repeat protein

RGD ID:

620226

Description:

Enables heparin binding activity. Predicted to act upstream of or within cellular senescence. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human PRELP (proline and arginine rich end leucine rich repeat protein); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC100363743; prolargin; proline arginine-rich end leucine-rich repeat protein; proline arginine-rich end leucine-rich repeat protein-like; proline-arginine-rich end leucine-rich repeat protein; proline/arginine-rich end leucine-rich repeat protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Candidate Gene For:

Bp397

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	47,920,480 - 47,943,547 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	47,922,590 - 47,932,324 (-)	Ensembl				GRCr8
mRatBN7.2	13	45,368,407 - 45,391,480 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	45,370,533 - 45,380,270 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	47,979,705 - 47,988,845 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	49,267,749 - 49,276,889 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	46,532,376 - 46,541,463 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	50,749,526 - 50,773,934 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	50,749,514 - 50,761,355 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	55,802,758 - 55,827,390 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	46,863,392 - 46,874,172 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	45,699,857 - 45,709,383 (-)	NCBI		Celera
RGSC_v3.1	13	46,877,436 - 46,888,215 (-)	NCBI
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,3',5-triiodo-L-thyronine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6alpha-methylprednisolone (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (EXP)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A2 (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP)

cobalt dichloride (EXP)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

deoxynivalenol (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibenzofurans (ISO)

dioxygen (ISO)

diquat (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethylparaben (ISO)

eugenol (EXP)

flavonoids (EXP)

fluoranthene (ISO)

furan (EXP)

gentamycin (EXP)

glyphosate (EXP)

hydrogen cyanide (ISO)

imidacloprid (EXP)

inulin (ISO)

lead diacetate (ISO)

methapyrilene (ISO)

methotrexate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nickel atom (ISO)

ochratoxin A (ISO)

ozone (ISO)

panobinostat (ISO)

paracetamol (EXP)

PCB138 (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium cyanide (ISO)

prednisolone (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (EXP,ISO)

sodium fluoride (EXP)

sulforaphane (ISO)

T-2 toxin (ISO)

tetrachloromethane (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

troglitazone (ISO)

valproic acid (ISO)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular senescence (ISO)

Cellular Component

extracellular space (IBA)

Molecular Function

heparin binding (IBA,IDA,IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

albuminuria (IAGP)

salt-sensitive hypertension (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	The amino-terminal part of PRELP binds to heparin and heparan sulfate.	Bengtsson E, etal., J Biol Chem 2000 Dec 29;275(52):40695-702.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Female-specific hypertension loci on rat chromosome 13.	Hoffman MJ, etal., Hypertension. 2013 Sep;62(3):557-63. doi: 10.1161/HYPERTENSIONAHA.113.01708. Epub 2013 Jul 1.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:15572682	PMID:19199708	PMID:20096814	PMID:20551380	PMID:24006456	PMID:24769233	PMID:26920026	PMID:27068509	PMID:27559042

Genomics

Comparative Map Data

Prelp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	47,920,480 - 47,943,547 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	47,922,590 - 47,932,324 (-)	Ensembl				GRCr8
mRatBN7.2	13	45,368,407 - 45,391,480 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	45,370,533 - 45,380,270 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	47,979,705 - 47,988,845 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	49,267,749 - 49,276,889 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	46,532,376 - 46,541,463 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	50,749,526 - 50,773,934 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	50,749,514 - 50,761,355 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	55,802,758 - 55,827,390 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	46,863,392 - 46,874,172 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	45,699,857 - 45,709,383 (-)	NCBI		Celera
RGSC_v3.1	13	46,877,436 - 46,888,215 (-)	NCBI
Cytogenetic Map	13	q13	NCBI

PRELP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	203,475,806 - 203,491,352 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	203,475,777 - 203,491,352 (+)	Ensembl			hg38	GRCh38
GRCh37	1	203,444,934 - 203,460,480 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	201,711,506 - 201,727,103 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	200,176,539 - 200,192,134	NCBI
Celera	1	176,574,517 - 176,590,114 (+)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	174,609,796 - 174,625,529 (+)	NCBI		HuRef
CHM1_1	1	204,867,696 - 204,883,317 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	202,738,636 - 202,754,205 (+)	NCBI		T2T-CHM13v2.0

Prelp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	133,838,042 - 133,857,820 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	133,838,042 - 133,849,152 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	133,910,304 - 133,930,102 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	133,910,304 - 133,921,414 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	135,806,881 - 135,817,978 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	135,726,689 - 135,737,788 (-)	NCBI		MGSCv36	mm8
Celera	1	136,525,698 - 136,536,797 (-)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	58.02	NCBI

Prelp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	39,429,690 - 39,443,299 (+)	Ensembl
ChiLan1.0	NW_004955406	39,429,845 - 39,442,577 (+)	NCBI	ChiLan1.0	ChiLan1.0

PRELP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	45,889,452 - 45,901,902 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	45,854,053 - 45,868,942 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	179,077,892 - 179,092,796 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	183,372,022 - 183,386,626 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	183,372,028 - 183,386,619 (+)	Ensembl			panPan2	panpan1.1

PRELP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	198,681 - 212,320 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	198,583 - 209,937 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	294,916 - 308,561 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	195,264 - 208,935 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	195,237 - 208,922 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	187,599 - 201,248 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	581,675 - 595,334 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	795,591 - 809,246 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Prelp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	71,920,731 - 71,934,667 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	1,155,292 - 1,169,467 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	1,155,348 - 1,169,276 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRELP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	64,190,982 - 64,207,001 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	64,190,978 - 64,207,008 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	70,484,576 - 70,500,618 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRELP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	25,854,443 - 25,867,179 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	25,851,674 - 25,867,177 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	26,627,734 - 26,642,894 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prelp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	7,403,305 - 7,413,414 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624807	7,400,999 - 7,413,455 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Prelp
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	1,764,195 - 1,775,828 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Prelp
173 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	52
Count of miRNA genes:	45
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000004241
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
6893344	Cm79	Cardiac mass QTL 79	1.5	0.04	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	46272922	51216694	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
12879444	Bp397	Blood pressure QTL 397			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	47601426	48068645	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
2303032	Bp328	Blood pressure QTL 328			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	43736327	47969993	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
4145117	Mcs27	Mammary carcinoma susceptibility QTL 27		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	13	45990077	50392939	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
12879472	Bp399	Blood pressure QTL 399			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	47780418	50392939	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

RH132004

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	45,368,457 - 45,368,644 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	50,749,577 - 50,749,763	NCBI	Rnor6.0
Rnor_5.0	13	55,802,809 - 55,802,995	UniSTS	Rnor5.0
RGSC_v3.4	13	46,861,321 - 46,861,507	UniSTS	RGSC3.4
Celera	13	45,697,786 - 45,697,972	UniSTS
RH 3.4 Map	13	173.3	UniSTS
Cytogenetic Map	13	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	65	159	89	88	57	66	57	6	326	164	11	138	81	92	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF163569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC072487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004241 ⟹ ENSRNOP00000004241

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	47,922,590 - 47,932,324 (-)	Ensembl
mRatBN7.2 Ensembl	13	45,370,533 - 45,380,270 (-)	Ensembl
Rnor_6.0 Ensembl	13	50,751,648 - 50,761,355 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076610 ⟹ ENSRNOP00000068464

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	50,749,542 - 50,761,306 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079116 ⟹ ENSRNOP00000075732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	50,749,514 - 50,755,046 (-)	Ensembl

RefSeq Acc Id:

NM_053385 ⟹ NP_445837

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	47,922,586 - 47,932,324 (-)	NCBI
mRatBN7.2	13	45,370,529 - 45,380,270 (-)	NCBI
Rnor_6.0	13	50,751,648 - 50,761,278 (-)	NCBI
Rnor_5.0	13	55,802,758 - 55,827,390 (-)	NCBI
RGSC_v3.4	13	46,863,392 - 46,874,172 (-)	RGD
Celera	13	45,699,857 - 45,709,383 (-)	NCBI

Sequence:

show sequence

GCTAACGCAGCTTCACCAAAGGGTGGGGAGGAACAGAGGAGTGCTCCAGCGTCCAGAGGAGAGG
CAGGTGTGTGCAGGTACATCACCTGGATCATGAGGGCATCCTTCTTCTGGTTCCTTCCACTTCT
CCTCATCTTGGCCTCAGTGGCCCAAGGCCAGCCAAGACCAAAACCTGGGATTAGGCGTAAACCC
AAGCCAAGGCCCACACCCAGCTTTCCTCAGCCCCACGAGCCAGCAGAGCCCACAGACCTGCCTC
CACCCCTTCCTCCTGGCCCTCCATCTGTCTTCCCTGACTGTCCACGGGAATGCTACTGCCCGCC
TGACTTCCCATCAGCCCTCTACTGTGACAGCCGAAACCTTCGCAAGGTCCCAATCATCCCACCC
CGAATTCACTACCTTTATCTGCAGAACAACTTCATCACCGAGCTCCCCGTAGAATCTTTCAAAA
ATGCCACAGGCCTCAGGTGGATCAACCTGGACAACAACCGCATTCGCAAGGTGGACCAGAGAGT
GCTGGAGAAGCTCCCTGGCCTGGCATTCCTCTACATGGACAAGAACCAGCTGGAAGAGGTGCCA
TCAGCTCTGCCCCGGAACCTGGAACAGCTGAGGCTAAGCCAGAACCTCATCTCCAGGATCCCGC
CCGGAGTATTCAGCAAGCTTGAGAACCTTCTGCTTCTGGATCTGCAGCACAATAGGCTGAGCGA
CGGAGTCTTCAAAGCCGACACCTTCCAGGGCCTCAAGAACCTCATGCAACTCAATCTGGCCCAC
AACATCCTGAGAAGGATGCCCCCCAAGGTGCCCCCGGCCATTCACCAGCTCTACCTGGACAGCA
ATAAGATCGAGACCATTCCCAGCGGATACTTCAAGGACTTCCCCAACCTTGCCTTCATCCGCAT
GAACTACAACAAGCTGTCGGATCGAGGGCTCCCCAAGAACTCCTTCAACATCTCCAACTTGCTG
GTGCTCCACTTGTCACACAACAAGATCAGCAATGTGCCGGCCATCAGCAACAAGCTGGAACACC
TGTACCTCAACAACAATAGCATAGAGAAGATCAATGGGACCCAGATTTGCCCCAGCAACCTAGT
GGCCTTCCATGACTTCTCCTCGGATCTGGAAAACGTGCCACACCTGCGCTACCTGCGGCTGGAT
GGGAATTTCCTGAAGCCACCCATCCCGTTGGACCTCATGATGTGCTTCCGCCTCCTGCAGTCTG
TGGTTATCTAGGCTGTGCCCAGAGCTGGACCTCCTCTGACAGCACTTGAAGGCTGGTGGCCCAA
GCTCACTGTTTTTATCTGTCTCCCTCTCTTGCTCCCAGCCCTGCCTTTTGTCCCCTGGCGTGGA
TGGTAAATACCACATAACCTGCTCCAGCTCTAAAGCAAGAGTCCCCACCCAGTCCAAAGACACC
CTGCCAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006249891 ⟹ XP_006249953

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	47,920,480 - 47,943,547 (-)	NCBI
mRatBN7.2	13	45,368,407 - 45,391,480 (-)	NCBI
Rnor_6.0	13	50,749,526 - 50,773,931 (-)	NCBI
Rnor_5.0	13	55,802,758 - 55,827,390 (-)	NCBI

Sequence:

show sequence

AGCCAGAAGTAAGGGAGTTAAGAAAAACTTTCAGGCTGGAGACTGAGTGAAGAAGAATAAGGGA
GATCAGTAGGGCCCAAGAGAAACCAGCAGCCTGCTGTCTCACAAAATGACAGGGAGCAAGGGAC
ACAATTTTGTGTTTTTCAAAAGGAAAATGATCACCCTGCAGAGGGTTTCTGTCCCTTACAAACA
GTTGTCCAGGAAGGGATCAAAGAACTGCTCGACTAGACCGAGGCTGGGCGAGCATTGCAGCAGG
GTTAGCCAGGAGCAGAACACACATTGTCACCATAGCCCTGCCCGACTGGTCCAGCACCACTAAG
TCTGCCTTCGCAAAGCTGCAGATGAGCCCAGAGCAGGGACACGAGGATGACATGGAACACTTGC
CGCTTTGCTGAGACAAGCTCTCCATCCCAATACTGTAGGAGGAAGCGCCCTCCCGCTCTCCTCT
GTTCCCTCCTCCTCCCTGCCCTCCCCCCTCTGATCTGCCCCTCCCTCCCCTAACCTAACCTCCC
CACCCCAATAGGATCTGGTGGAAGAAAATCAGGCAGACACAGACACGCACCAACTGGGAGTCCA
GAACTTCTAGCTGGCTCTCTGCTAACGCAGCTTCACCAAAGGGTGGGGAGGAACAGAGGAGTGC
TCCAGCGTCCAGAGGAGAGGCAGGTGTGTGCAGGTACATCACCTGGATCATGAGGGCATCCTTC
TTCTGGTTCCTTCCACTTCTCCTCATCTTGGCCTCAGTGGCCCAAGGCCAGCCAAGACCAAAAC
CTGGGATTAGGCGTAAACCCAAGCCAAGGCCCACACCCAGCTTTCCTCAGCCCCACGAGCCAGC
AGAGCCCACAGACCTGCCTCCACCCCTTCCTCCTGGCCCTCCATCTGTCTTCCCTGACTGTCCA
CGGGAATGCTACTGCCCGCCTGACTTCCCATCAGCCCTCTACTGTGACAGCCGAAACCTTCGCA
AGGTCCCAATCATCCCACCCCGAATTCACTACCTTTATCTGCAGAACAACTTCATCACCGAGCT
CCCCGTAGAATCTTTCAAAAATGCCACAGGCCTCAGGTGGATCAACCTGGACAACAACCGCATT
CGCAAGGTGGACCAGAGAGTGCTGGAGAAGCTCCCTGGCCTGGCATTCCTCTACATGGACAAGA
ACCAGCTGGAAGAGGTGCCATCAGCTCTGCCCCGGAACCTGGAACAGCTGAGGCTAAGCCAGAA
CCTCATCTCCAGGATCCCGCCCGGAGTATTCAGCAAGCTTGAGAACCTTCTGCTTCTGGATCTG
CAGCACAATAGGCTGAGCGACGGAGTCTTCAAAGCCGACACCTTCCAGGGCCTCAAGAACCTCA
TGCAACTCAATCTGGCCCACAACATCCTGAGAAGGATGCCCCCCAAGGTGCCCCCGGCCATTCA
CCAGCTCTACCTGGACAGCAATAAGATCGAGACCATTCCCAGCGGATACTTCAAGGACTTCCCC
AACCTTGCCTTCATCCGCATGAACTACAACAAGCTGTCGGATCGAGGGCTCCCCAAGAACTCCT
TCAACATCTCCAACTTGCTGGTGCTCCACTTGTCACACAACAAGATCAGCAATGTGCCGGCCAT
CAGCAACAAGCTGGAACACCTGTACCTCAACAACAATAGCATAGAGAAGATCAATGGGACCCAG
ATTTGCCCCAGCAACCTAGTGGCCTTCCATGACTTCTCCTCGGATCTGGAAAACGTGCCACACC
TGCGCTACCTGCGGCTGGATGGGAATTTCCTGAAGCCACCCATCCCGTTGGACCTCATGATGTG
CTTCCGCCTCCTGCAGTCTGTGGTTATCTAGGCTGTGCCCAGAGCTGGACCTCCTCTGACAGCA
CTTGAAGGCTGGTGGCCCAAGCTCACTGTTTTTATCTGTCTCCCTCTCTTGCTCCCAGCCCTGC
CTTTTGTCCCCTGGCGTGGATGGTAAATACCACATAACCTGCTCCAGCTCTAAAGCAAGAGTCC
CCACCCAGTCCAAAGACACCCTGCCAGCCAAAACCTCTGGTCTTCTTTGGTCTCCCTTTGCTTC
AGAAACATAGGTGGATGCCAACAGACACAACCCCTCCACCCCCCACTCCACGAGTCTCTCCTGG
GTAAGGCTGGGCCATGGACTGACATCTTATTTTAGTGTTAGCCGAGTAAGAAGCAGAAACCATT
CTGGGAGTGAACCCTGGAAAGTTCCACTGAGAATCCCTCCATTTGGGCAACTCTGTCTCAAGAA
GGCCGATAGATCCAGGTCTCCTAAGCCTGAGATCCCTTCCGAAGCTGTCGTTCTGCCACTGTTC
CCTGACATCACACAGATGTCACCCTGTTCTCTACTGTCTTGAATTCTTCAGAAAGGAAGTGTGG
AGGAATGAATAACTAAGGTGGGGTAGAGGGTCAGGGTTCCCCACAAGTTCCAGCCCTTCCTCCT
TTGGGGTAAACACAGAGGCCACTTAGATGGACCTCAGAGAGGAACAGCCAGGGAGGCACAGAGT
GGTTCAAGGAACTAGACTTTAGCTAATAGGTGGTGGCTGGGGGATGTCAGAGCCCCAAACTGGG
CCTGTGTGGATGTAGACAGGCCCTGCAATCTCCCTCACCCAAACTTGACAAAAGGCTCTAAGCC
CTGGAGGACAGTGTTCGCAATGGAGGGCCAAGAGGCTTTGTCCCTGCTTCGTCTGCTCTCTATC
ATGGGTGAGACTCAGTCAGTCGCCCCACCCCAAAGGCAGTTCTTAAGAAACAGAGGAAGAGGTG
GAGCGCCTAGAAATCTCCCAGAAGCCTCTTCCACAGTGGGGATTAGCCTCTACCTCTAAGTCCG
ACTCATCAGCGACATCTGGTGGCTGGTGAAAGTCACAGCTGAGTCCCCTCTCTTTGGGTGATAC
TGCGATTCTCTGATTCTATAGGGGAACCAGCTGAGTGTCTTTCTCCTGTTGGGTCTAAAGGGAA
GGGCAGAGGTTGGGGGTTCGTTCCCATCAGGAGTGATTGTGAGTGGGAAGGCTTTGAGAGTCTA
AGGAAAGCTAGTTTGAGAATGGCCTTGTCAGGTCTCTCTTGCTCTCGGCTTCCACAGTAGATCC
GATGATCCTCCAAGGCCCTCTCAGAGCATCTGTTTCACATCTGTGCACCCTCTTCTAGCGCACA
CCTAACGCAGGACAAGTGGCATCGCCCTCCCTTTGCAGTAATTTATTCCCTGCATAGAGTGTCC
CTCCCCCAACGACTTCCCACTCTTCTTTCCTAGCCCAGGTGAGCAGCTTGGCAGGTTCCCAAGA
ACCTGGGCTTCCTGCCTTTCCCTTCCCTTCTCCTCCCTCTAGGGAAGGCTGCCTTTGCCCTGCC
ACAGTTCTCTGGGTGGATGAGGAGGAGGAATATGTGGAGATGAATGTTCTGGAAGTGAGTGAAA
CACAGGACCCATCCTCCTTAAGCTGGGGCAGGCTCTGGAGGCTTCACGGTGTCACAGAAACCTA
TTTGAAGACATTGGATTAGGCTGGGCCCTATAGTCCAGAAGCTCCATTTATATTCTCAGTCACC
TTTCTTGTTGTTGAAAATAGAGCCCACTTCATACCGCCTTTTCCCTGCAGTGCAACGTCCTCGT
TCTTCCTAGTTGCAGCTGGTTTCTCCAAGGCTCCTGCTTAAAGTCAATGCATTATTATGGCTGA
AAGCAACCTGGTGCTACGGCCTGGACAAGCCCCCTCTGCACCCACGATAACCTGCAACCTCTGG
CCCTCTCAGGAGGCCCACGGGGATCACAGCTCCTGTGGCCGCTAGGGATGGGGGGGTGGGCACT
GATCCTGCAAACCTGAACTAGCATCCCACCATTGGCATCCCATTATCCACCCTGGACCATGCCA
GCTTCCTCCCCTGCTCTCTGCATCTGTCAGCTGGAGGGACAAGAGTTAAGCTGGCTTTACAGGA
AACGTACAGACAGTGCTGGTTACCTCGAGGTTTAGACACAAGTTTATTCAATCAGTGCCTTTAG
CATTTATACACAGGCATGTGCGTGTGTACACACGTGCGCATGTGCGAACTCACACCCTGTGCGT
CTTATCCATTCTCCAGACCATGTTAACTCTGACCCAGCTTCCACATTTCAACAAGCTTCACCGC
AGTGGAAATAAAGTCATGTGGGAAATACCCAGCGTGAACCTGA

hide sequence

RefSeq Acc Id:

XM_008769572 ⟹ XP_008767794

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	47,920,480 - 47,943,534 (-)	NCBI
mRatBN7.2	13	45,368,407 - 45,391,480 (-)	NCBI
Rnor_6.0	13	50,749,526 - 50,773,934 (-)	NCBI

Sequence:

show sequence

CCTAGCCAGAAGTAAGGGAGTTAAGAAAAACTTTCAGGCTGGAGACTGAGTGAAGAAGAATAAG
GGAGATCAGTAGGGCCCAAGAGAAACCAGCAGCCTGCTGTCTCACAAAATGACAGGGAGCAAGG
GACACAATTTTGTGTTTTTCAAAAGGAAAATGATCACCCTGCAGAGGGTTTCTGTCCCTTACAA
ACAGTTGTCCAGGAAGGGATCAAAGAACTGCTCGACTAGACCGAGGCTGGGCGAGCATTGCAGC
AGGGTTAGCCAGGAGCAGAACACACATTGTCACCATAGCCCTGCCCGACTGGTCCAGCACCACT
AAGTCTGCCTTCGCAAAGCTGCAGATGAGCCCAGAGCAGGGACACGAGGATGACATGGAACACT
TGCCGCTTTGCTGAGACAAGCTCTCCATCCCAATACTGTAGGAGGAAGCGCCCTCCCGCTCTCC
TCTGTTCCCTCCTCCTCCCTGCCCTCCCCCCTCTGATCTGCCCCTCCCTCCCCTAACCTAACCT
CCCCACCCCAATAGGATCTGGTGGAAGAAAATCAGGCAGACACAGACACGCACCAACTGGGAGT
CCAGAACTTCTAGCTGGCTCTCTGCTAACGCAGCTTCACCAAAGGGTGGGGAGGAACAGAGGAG
TGCTCCAGCGTCCAGAGGAGAGGCAGGTGTGTGCAGTTTCCTTCCTGCAGGTACATCACCTGGA
TCATGAGGGCATCCTTCTTCTGGTTCCTTCCACTTCTCCTCATCTTGGCCTCAGTGGCCCAAGG
CCAGCCAAGACCAAAACCTGGGATTAGGCGTAAACCCAAGCCAAGGCCCACACCCAGCTTTCCT
CAGCCCCACGAGCCAGCAGAGCCCACAGACCTGCCTCCACCCCTTCCTCCTGGCCCTCCATCTG
TCTTCCCTGACTGTCCACGGGAATGCTACTGCCCGCCTGACTTCCCATCAGCCCTCTACTGTGA
CAGCCGAAACCTTCGCAAGGTCCCAATCATCCCACCCCGAATTCACTACCTTTATCTGCAGAAC
AACTTCATCACCGAGCTCCCCGTAGAATCTTTCAAAAATGCCACAGGCCTCAGGTGGATCAACC
TGGACAACAACCGCATTCGCAAGGTGGACCAGAGAGTGCTGGAGAAGCTCCCTGGCCTGGCATT
CCTCTACATGGACAAGAACCAGCTGGAAGAGGTGCCATCAGCTCTGCCCCGGAACCTGGAACAG
CTGAGGCTAAGCCAGAACCTCATCTCCAGGATCCCGCCCGGAGTATTCAGCAAGCTTGAGAACC
TTCTGCTTCTGGATCTGCAGCACAATAGGCTGAGCGACGGAGTCTTCAAAGCCGACACCTTCCA
GGGCCTCAAGAACCTCATGCAACTCAATCTGGCCCACAACATCCTGAGAAGGATGCCCCCCAAG
GTGCCCCCGGCCATTCACCAGCTCTACCTGGACAGCAATAAGATCGAGACCATTCCCAGCGGAT
ACTTCAAGGACTTCCCCAACCTTGCCTTCATCCGCATGAACTACAACAAGCTGTCGGATCGAGG
GCTCCCCAAGAACTCCTTCAACATCTCCAACTTGCTGGTGCTCCACTTGTCACACAACAAGATC
AGCAATGTGCCGGCCATCAGCAACAAGCTGGAACACCTGTACCTCAACAACAATAGCATAGAGA
AGATCAATGGGACCCAGATTTGCCCCAGCAACCTAGTGGCCTTCCATGACTTCTCCTCGGATCT
GGAAAACGTGCCACACCTGCGCTACCTGCGGCTGGATGGGAATTTCCTGAAGCCACCCATCCCG
TTGGACCTCATGATGTGCTTCCGCCTCCTGCAGTCTGTGGTTATCTAGGCTGTGCCCAGAGCTG
GACCTCCTCTGACAGCACTTGAAGGCTGGTGGCCCAAGCTCACTGTTTTTATCTGTCTCCCTCT
CTTGCTCCCAGCCCTGCCTTTTGTCCCCTGGCGTGGATGGTAAATACCACATAACCTGCTCCAG
CTCTAAAGCAAGAGTCCCCACCCAGTCCAAAGACACCCTGCCAGCCAAAACCTCTGGTCTTCTT
TGGTCTCCCTTTGCTTCAGAAACATAGGTGGATGCCAACAGACACAACCCCTCCACCCCCCACT
CCACGAGTCTCTCCTGGGTAAGGCTGGGCCATGGACTGACATCTTATTTTAGTGTTAGCCGAGT
AAGAAGCAGAAACCATTCTGGGAGTGAACCCTGGAAAGTTCCACTGAGAATCCCTCCATTTGGG
CAACTCTGTCTCAAGAAGGCCGATAGATCCAGGTCTCCTAAGCCTGAGATCCCTTCCGAAGCTG
TCGTTCTGCCACTGTTCCCTGACATCACACAGATGTCACCCTGTTCTCTACTGTCTTGAATTCT
TCAGAAAGGAAGTGTGGAGGAATGAATAACTAAGGTGGGGTAGAGGGTCAGGGTTCCCCACAAG
TTCCAGCCCTTCCTCCTTTGGGGTAAACACAGAGGCCACTTAGATGGACCTCAGAGAGGAACAG
CCAGGGAGGCACAGAGTGGTTCAAGGAACTAGACTTTAGCTAATAGGTGGTGGCTGGGGGATGT
CAGAGCCCCAAACTGGGCCTGTGTGGATGTAGACAGGCCCTGCAATCTCCCTCACCCAAACTTG
ACAAAAGGCTCTAAGCCCTGGAGGACAGTGTTCGCAATGGAGGGCCAAGAGGCTTTGTCCCTGC
TTCGTCTGCTCTCTATCATGGGTGAGACTCAGTCAGTCGCCCCACCCCAAAGGCAGTTCTTAAG
AAACAGAGGAAGAGGTGGAGCGCCTAGAAATCTCCCAGAAGCCTCTTCCACAGTGGGGATTAGC
CTCTACCTCTAAGTCCGACTCATCAGCGACATCTGGTGGCTGGTGAAAGTCACAGCTGAGTCCC
CTCTCTTTGGGTGATACTGCGATTCTCTGATTCTATAGGGGAACCAGCTGAGTGTCTTTCTCCT
GTTGGGTCTAAAGGGAAGGGCAGAGGTTGGGGGTTCGTTCCCATCAGGAGTGATTGTGAGTGGG
AAGGCTTTGAGAGTCTAAGGAAAGCTAGTTTGAGAATGGCCTTGTCAGGTCTCTCTTGCTCTCG
GCTTCCACAGTAGATCCGATGATCCTCCAAGGCCCTCTCAGAGCATCTGTTTCACATCTGTGCA
CCCTCTTCTAGCGCACACCTAACGCAGGACAAGTGGCATCGCCCTCCCTTTGCAGTAATTTATT
CCCTGCATAGAGTGTCCCTCCCCCAACGACTTCCCACTCTTCTTTCCTAGCCCAGGTGAGCAGC
TTGGCAGGTTCCCAAGAACCTGGGCTTCCTGCCTTTCCCTTCCCTTCTCCTCCCTCTAGGGAAG
GCTGCCTTTGCCCTGCCACAGTTCTCTGGGTGGATGAGGAGGAGGAATATGTGGAGATGAATGT
TCTGGAAGTGAGTGAAACACAGGACCCATCCTCCTTAAGCTGGGGCAGGCTCTGGAGGCTTCAC
GGTGTCACAGAAACCTATTTGAAGACATTGGATTAGGCTGGGCCCTATAGTCCAGAAGCTCCAT
TTATATTCTCAGTCACCTTTCTTGTTGTTGAAAATAGAGCCCACTTCATACCGCCTTTTCCCTG
CAGTGCAACGTCCTCGTTCTTCCTAGTTGCAGCTGGTTTCTCCAAGGCTCCTGCTTAAAGTCAA
TGCATTATTATGGCTGAAAGCAACCTGGTGCTACGGCCTGGACAAGCCCCCTCTGCACCCACGA
TAACCTGCAACCTCTGGCCCTCTCAGGAGGCCCACGGGGATCACAGCTCCTGTGGCCGCTAGGG
ATGGGGGGGTGGGCACTGATCCTGCAAACCTGAACTAGCATCCCACCATTGGCATCCCATTATC
CACCCTGGACCATGCCAGCTTCCTCCCCTGCTCTCTGCATCTGTCAGCTGGAGGGACAAGAGTT
AAGCTGGCTTTACAGGAAACGTACAGACAGTGCTGGTTACCTCGAGGTTTAGACACAAGTTTAT
TCAATCAGTGCCTTTAGCATTTATACACAGGCATGTGCGTGTGTACACACGTGCGCATGTGCGA
ACTCACACCCTGTGCGTCTTATCCATTCTCCAGACCATGTTAACTCTGACCCAGCTTCCACATT
TCAACAAGCTTCACCGCAGTGGAAATAAAGTCATGTGGGAAATACCCAGCGTGAACCTGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_445837	(Get FASTA)	NCBI Sequence Viewer
	XP_006249953	(Get FASTA)	NCBI Sequence Viewer
	XP_008767794	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG23724	(Get FASTA)	NCBI Sequence Viewer
	AAH72487	(Get FASTA)	NCBI Sequence Viewer
	EDM09749	(Get FASTA)	NCBI Sequence Viewer
	EDM09750	(Get FASTA)	NCBI Sequence Viewer
	EDM09751	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004241
	ENSRNOP00000004241.2
GenBank Protein	Q9EQP5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_445837 ⟸ NM_053385
- Peptide Label:	precursor
- UniProtKB:	Q9EQP5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRASFFWFLPLLLILASVAQGQPRPKPGIRRKPKPRPTPSFPQPHEPAEPTDLPPPLPPGPPSV FPDCPRECYCPPDFPSALYCDSRNLRKVPIIPPRIHYLYLQNNFITELPVESFKNATGLRWINL DNNRIRKVDQRVLEKLPGLAFLYMDKNQLEEVPSALPRNLEQLRLSQNLISRIPPGVFSKLENL LLLDLQHNRLSDGVFKADTFQGLKNLMQLNLAHNILRRMPPKVPPAIHQLYLDSNKIETIPSGY FKDFPNLAFIRMNYNKLSDRGLPKNSFNISNLLVLHLSHNKISNVPAISNKLEHLYLNNNSIEK INGTQICPSNLVAFHDFSSDLENVPHLRYLRLDGNFLKPPIPLDLMMCFRLLQSVVI hide sequence

RefSeq Acc Id:	XP_006249953 ⟸ XM_006249891
- Peptide Label:	isoform X1
- UniProtKB:	Q9EQP5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRASFFWFLPLLLILASVAQGQPRPKPGIRRKPKPRPTPSFPQPHEPAEPTDLPPPLPPGPPSV FPDCPRECYCPPDFPSALYCDSRNLRKVPIIPPRIHYLYLQNNFITELPVESFKNATGLRWINL DNNRIRKVDQRVLEKLPGLAFLYMDKNQLEEVPSALPRNLEQLRLSQNLISRIPPGVFSKLENL LLLDLQHNRLSDGVFKADTFQGLKNLMQLNLAHNILRRMPPKVPPAIHQLYLDSNKIETIPSGY FKDFPNLAFIRMNYNKLSDRGLPKNSFNISNLLVLHLSHNKISNVPAISNKLEHLYLNNNSIEK INGTQICPSNLVAFHDFSSDLENVPHLRYLRLDGNFLKPPIPLDLMMCFRLLQSVVI hide sequence

RefSeq Acc Id:	XP_008767794 ⟸ XM_008769572
- Peptide Label:	isoform X1
- UniProtKB:	Q9EQP5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRASFFWFLPLLLILASVAQGQPRPKPGIRRKPKPRPTPSFPQPHEPAEPTDLPPPLPPGPPSV FPDCPRECYCPPDFPSALYCDSRNLRKVPIIPPRIHYLYLQNNFITELPVESFKNATGLRWINL DNNRIRKVDQRVLEKLPGLAFLYMDKNQLEEVPSALPRNLEQLRLSQNLISRIPPGVFSKLENL LLLDLQHNRLSDGVFKADTFQGLKNLMQLNLAHNILRRMPPKVPPAIHQLYLDSNKIETIPSGY FKDFPNLAFIRMNYNKLSDRGLPKNSFNISNLLVLHLSHNKISNVPAISNKLEHLYLNNNSIEK INGTQICPSNLVAFHDFSSDLENVPHLRYLRLDGNFLKPPIPLDLMMCFRLLQSVVI hide sequence

Ensembl Acc Id:

ENSRNOP00000075732 ⟸ ENSRNOT00000079116

Ensembl Acc Id:

ENSRNOP00000004241 ⟸ ENSRNOT00000004241

Ensembl Acc Id:

ENSRNOP00000068464 ⟸ ENSRNOT00000076610

Protein Domains

LRRNT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9EQP5-F1-model_v2	AlphaFold	Q9EQP5	1-377	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698828

Promoter ID:

EPDNEW_R9349

Type:

initiation region

Name:

Prelp_1

Description:

proline and arginine rich end leucine rich repeat protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	50,761,328 - 50,761,388	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620226	AgrOrtholog
BioCyc Gene	G2FUF-18268	BioCyc
Ensembl Genes	ENSRNOG00000003120	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000004241	ENTREZGENE
	ENSRNOT00000004241.5	UniProtKB/Swiss-Prot
Gene3D-CATH	3.80.10.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7104853	IMAGE-MGC_LOAD
InterPro	Leu-rich_rpt	UniProtKB/Swiss-Prot
	Leu-rich_rpt_typical-subtyp	UniProtKB/Swiss-Prot
	LRR_dom_sf	UniProtKB/Swiss-Prot
	LRRNT	UniProtKB/Swiss-Prot
	SLRP	UniProtKB/Swiss-Prot
KEGG Report	rno:84400	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:91584	IMAGE-MGC_LOAD
NCBI Gene	84400	ENTREZGENE
PANTHER	AGAP008170-PA	UniProtKB/Swiss-Prot
	PTHR45712:SF8	UniProtKB/Swiss-Prot
Pfam	LRR_8	UniProtKB/Swiss-Prot
	LRRNT	UniProtKB/Swiss-Prot
PhenoGen	Prelp	PhenoGen
PROSITE	LRR	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003120	RatGTEx
SMART	LRR_BAC	UniProtKB/Swiss-Prot
	LRR_TYP	UniProtKB/Swiss-Prot
	LRRNT	UniProtKB/Swiss-Prot
Superfamily-SCOP	L domain-like	UniProtKB/Swiss-Prot
UniProt	A6IC96_RAT	UniProtKB/TrEMBL
	A6IC98_RAT	UniProtKB/TrEMBL
	PRELP_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-15	Prelp	proline and arginine rich end leucine rich repeat protein	Prelp	proline/arginine-rich end leucine-rich repeat protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-04-17	Prelp	proline/arginine-rich end leucine-rich repeat protein	LOC100363743	proline arginine-rich end leucine-rich repeat protein-like	Data merged from RGD:2322408	737654	PROVISIONAL
2010-05-06	LOC100363743	proline arginine-rich end leucine-rich repeat protein-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2009-10-22	Prelp	proline/arginine-rich end leucine-rich repeat protein	Prelp	proline arginine-rich end leucine-rich repeat protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-12-14	Prelp	proline arginine-rich end leucine-rich repeat protein			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Prelp	proline arginine-rich end leucine-rich repeat protein			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_protein	leucine-rich repeat protein, also contains a high number of proline and arginine residues	727301

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Mammalian Phenotype