Nfib (nuclear factor I/B) - Rat Genome Database

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Gene: Nfib (nuclear factor I/B) Rattus norvegicus
Analyze
Symbol: Nfib
Name: nuclear factor I/B
RGD ID: 62015
Description: Enables double-stranded DNA binding activity. Predicted to be involved in several processes, including lung epithelial cell differentiation; nervous system development; and regulation of DNA-templated transcription. Predicted to act upstream of or within several processes, including exit from mitosis; nervous system development; and salivary gland development. Predicted to be located in cerebellar mossy fiber and nucleus. Orthologous to human NFIB (nuclear factor I B); PARTICIPATES IN forkhead class A signaling pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: nuclear factor 1 B-type; olfactory epithelium nuclear factor I-B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85101,805,168 - 102,020,618 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5101,805,168 - 102,019,945 (-)EnsemblGRCr8
mRatBN7.2596,759,208 - 96,974,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl596,764,653 - 96,975,479 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx599,136,963 - 99,352,302 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05100,938,651 - 101,153,626 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05100,947,847 - 101,163,159 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05100,436,343 - 100,647,962 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5100,439,082 - 100,647,727 (-)Ensemblrn6Rnor6.0
Rnor_5.05104,464,121 - 104,676,709 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45101,184,253 - 101,409,907 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera595,320,913 - 95,528,007 (-)NCBICelera
RGSC_v3.15101,189,483 - 101,283,030 (-)NCBI
Cytogenetic Map5q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
acetamide  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP,ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[ghi]perylene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
butanal  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cyproconazole  (ISO)
cytarabine  (ISO)
dibenzo[a,l]pyrene  (ISO)
dichloromethane  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
ethylbenzene  (ISO)
fenthion  (ISO)
flutamide  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gamma-hexachlorocyclohexane  (EXP)
genistein  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
iron atom  (ISO)
iron(0)  (ISO)
L-ascorbic acid  (ISO)
leflunomide  (ISO)
malathion  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dibromide  (ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methoxychlor  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nimesulide  (EXP)
o-xylene  (ISO)
oxaliplatin  (EXP,ISO)
oxybenzone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
phenol red  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
Ptaquiloside  (ISO)
pyridaben  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulindac  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
topotecan  (EXP)
trichloroethene  (EXP,ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anterior commissure morphogenesis  (ISO)
brain development  (ISO)
cell differentiation involved in salivary gland development  (ISO)
cell proliferation in forebrain  (ISO)
chondrocyte differentiation  (ISO)
club cell differentiation  (ISO)
commissural neuron axon guidance  (ISO)
DNA replication  (IEA)
DNA-templated transcription  (IEA)
exit from mitosis  (ISO)
forebrain development  (ISO)
gene expression  (ISO)
generation of neurons  (ISO)
glial cell differentiation  (ISO)
glial cell fate specification  (ISO)
glial cell proliferation  (ISO)
hindbrain development  (ISO)
lung ciliated cell differentiation  (ISO)
lung development  (ISO)
negative regulation of cell population proliferation  (ISO)
negative regulation of DNA-templated transcription  (TAS)
negative regulation of epithelial cell proliferation involved in lung morphogenesis  (ISO)
negative regulation of mesenchymal cell proliferation involved in lung development  (ISO)
negative regulation of miRNA transcription  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
neural precursor cell proliferation  (ISO)
neurogenesis  (ISO)
neuron fate specification  (ISO)
positive regulation of DNA-templated transcription  (IEA,ISO,TAS)
positive regulation of transcription by RNA polymerase II  (ISO)
principal sensory nucleus of trigeminal nerve development  (ISO)
regeneration  (ISO)
regulation of DNA-templated transcription  (IEA)
response to bacterium  (ISO)
response to wounding  (ISO)
retina development in camera-type eye  (ISO)
salivary gland cavitation  (ISO)
stem cell population maintenance  (ISO)
tissue homeostasis  (ISO)
type I pneumocyte differentiation  (ISO)
type II pneumocyte differentiation  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Identification of NFI-binding sites and cloning of NFI-cDNAs suggest a regulatory role for NFI transcription factors in olfactory neuron gene expression. Baumeister H, etal., Brain Res Mol Brain Res 1999 Sep 8;72(1):65-79.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. Expression, DNA-binding specificity and transcriptional regulation of nuclear factor 1 family proteins from rat. Osada S, etal., Biochem J 1999 Aug 15;342 ( Pt 1)(21):189-98.
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:9056636   PMID:9099724   PMID:11850179   PMID:12477932   PMID:15632069   PMID:16147868   PMID:17904922   PMID:18384814   PMID:19107796   PMID:19540848   PMID:19706729   PMID:19961580  
PMID:21513708   PMID:23012479   PMID:25403566   PMID:30388402   PMID:33275244   PMID:33506922  


Genomics

Comparative Map Data
Nfib
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85101,805,168 - 102,020,618 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5101,805,168 - 102,019,945 (-)EnsemblGRCr8
mRatBN7.2596,759,208 - 96,974,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl596,764,653 - 96,975,479 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx599,136,963 - 99,352,302 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05100,938,651 - 101,153,626 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05100,947,847 - 101,163,159 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05100,436,343 - 100,647,962 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5100,439,082 - 100,647,727 (-)Ensemblrn6Rnor6.0
Rnor_5.05104,464,121 - 104,676,709 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45101,184,253 - 101,409,907 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera595,320,913 - 95,528,007 (-)NCBICelera
RGSC_v3.15101,189,483 - 101,283,030 (-)NCBI
Cytogenetic Map5q31NCBI
NFIB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38914,081,843 - 14,532,077 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl914,081,843 - 14,398,983 (-)Ensemblhg38GRCh38
GRCh37914,081,842 - 14,532,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36914,071,847 - 14,303,945 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34914,077,372 - 14,303,719NCBI
Celera914,015,384 - 14,332,471 (-)NCBICelera
Cytogenetic Map9p23-p22.3NCBI
HuRef914,045,221 - 14,362,372 (-)NCBIHuRef
CHM1_1914,081,962 - 14,399,030 (-)NCBICHM1_1
T2T-CHM13v2.0914,091,330 - 14,541,744 (-)NCBIT2T-CHM13v2.0
Nfib
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39482,208,410 - 82,424,988 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl482,208,410 - 82,623,987 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38482,290,173 - 82,506,751 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl482,290,173 - 82,705,750 (-)Ensemblmm10GRCm38
MGSCv37481,936,077 - 82,151,212 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36481,766,962 - 81,976,354 (-)NCBIMGSCv36mm8
Celera480,824,138 - 81,039,259 (-)NCBICelera
Cytogenetic Map4C3NCBI
cM Map438.4NCBI
Nfib
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543417,198,571 - 17,415,084 (-)Ensembl
ChiLan1.0NW_00495543417,192,188 - 17,603,503 (-)NCBIChiLan1.0ChiLan1.0
NFIB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211110,000,191 - 110,450,298 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19110,006,138 - 110,456,242 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0913,923,516 - 14,376,264 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1914,432,239 - 14,664,424 (-)NCBIPanPan1.1PanPan1.1panPan2
NFIB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11134,573,136 - 35,010,319 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1134,579,431 - 34,901,322 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1133,281,491 - 33,523,124 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01135,477,680 - 35,719,587 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1135,483,618 - 35,719,219 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11134,182,236 - 34,423,934 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01133,974,417 - 34,216,067 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01134,631,192 - 34,872,773 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nfib
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947149,310,349 - 149,730,717 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365397,769,413 - 7,985,316 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365397,763,036 - 8,185,001 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFIB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1208,175,194 - 208,421,602 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11208,182,397 - 208,427,504 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21231,957,992 - 232,197,794 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NFIB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11265,043,819 - 65,487,832 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1265,256,407 - 65,481,485 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603853,635,229 - 53,707,627 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nfib
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473618,377,624 - 18,586,424 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473618,372,418 - 18,586,390 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Nfib
1043 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:450
Count of miRNA genes:204
Interacting mature miRNAs:252
Transcripts:ENSRNOT00000013092, ENSRNOT00000067435, ENSRNOT00000067538
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)573779642118779642Rat
2303586Gluco52Glucose level QTL 522blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)5100826632145826632Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)573779642103472210Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)584630798129630798Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)584630798129630798Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)592583776137583776Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)598972960143972960Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
2303618Vencon1Ventilatory control QTL 13.8respiration trait (VT:0001943)oxygen consumption (CMO:0002169)5100826632145826632Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584630798129630798Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)594034903139034903Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)595062526133270832Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
1600362Mcs19Mammary carcinoma susceptibility QTL 192.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)582032155127032155Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)589369373134369373Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)597492524133270832Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)573779642118779642Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)595062526133270832Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)592881678137881678Rat

Markers in Region
D5Rat149  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85102,105,698 - 102,105,896 (+)Marker Load Pipeline
mRatBN7.2597,059,760 - 97,059,958 (+)MAPPERmRatBN7.2
Rnor_6.05100,723,739 - 100,723,936NCBIRnor6.0
Rnor_6.05100,745,417 - 100,745,614NCBIRnor6.0
Rnor_5.05104,770,864 - 104,771,061UniSTSRnor5.0
Rnor_5.05104,751,414 - 104,751,611UniSTSRnor5.0
RGSC_v3.45101,506,332 - 101,506,667RGDRGSC3.4
RGSC_v3.45101,506,464 - 101,506,661UniSTSRGSC3.4
Celera595,614,587 - 95,614,784UniSTS
RGSC_v3.15101,511,690 - 101,511,887RGD
RH 3.4 Map5723.5UniSTS
RH 3.4 Map5723.5RGD
SHRSP x BN Map553.6299RGD
SHRSP x BN Map553.6299UniSTS
Cytogenetic Map5q31UniSTS
D5Got128  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2596,824,138 - 96,824,374 (+)MAPPERmRatBN7.2
Rnor_6.05100,497,947 - 100,498,184NCBIRnor6.0
Rnor_5.05104,528,723 - 104,528,960UniSTSRnor5.0
RGSC_v3.45101,243,911 - 101,244,149RGDRGSC3.4
RGSC_v3.45101,243,912 - 101,244,149UniSTSRGSC3.4
Celera595,379,682 - 95,379,941UniSTS
RGSC_v3.15101,249,138 - 101,249,375RGD
RH 3.4 Map5750.39UniSTS
RH 3.4 Map5750.39RGD
RH 2.0 Map5614.0RGD
Cytogenetic Map5q31UniSTS
D5Got240  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.45101,228,767 - 101,228,906UniSTSRGSC3.4
Celera595,364,459 - 95,364,598UniSTS
Cytogenetic Map5q31UniSTS
D9S2012  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2596,759,223 - 96,759,349 (+)MAPPERmRatBN7.2
Rnor_6.05100,433,284 - 100,433,409NCBIRnor6.0
Rnor_5.05104,464,137 - 104,464,262UniSTSRnor5.0
RGSC_v3.45101,178,460 - 101,178,585UniSTSRGSC3.4
Celera595,314,996 - 95,315,121UniSTS
Cytogenetic Map5q31UniSTS
RH132021  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2597,013,981 - 97,014,171 (+)MAPPERmRatBN7.2
Rnor_6.05100,687,980 - 100,688,169NCBIRnor6.0
Rnor_5.05104,715,494 - 104,715,683UniSTSRnor5.0
RGSC_v3.45101,456,449 - 101,456,638UniSTSRGSC3.4
Celera595,568,856 - 95,569,045UniSTS
RH 3.4 Map5727.1UniSTS
Cytogenetic Map5q31UniSTS
RH142928  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2596,786,688 - 96,786,855 (+)MAPPERmRatBN7.2
Rnor_6.05100,460,751 - 100,460,917NCBIRnor6.0
Rnor_5.05104,491,527 - 104,491,693UniSTSRnor5.0
RGSC_v3.45101,206,745 - 101,206,911UniSTSRGSC3.4
Celera595,342,271 - 95,342,437UniSTS
RH 3.4 Map5724.11UniSTS
Cytogenetic Map5q31UniSTS
RH143568  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2596,787,691 - 96,787,905 (+)MAPPERmRatBN7.2
Rnor_6.05100,461,754 - 100,461,967NCBIRnor6.0
Rnor_5.05104,492,530 - 104,492,743UniSTSRnor5.0
RGSC_v3.45101,207,748 - 101,207,961UniSTSRGSC3.4
Celera595,343,274 - 95,343,487UniSTS
Cytogenetic Map5q31UniSTS
RH138459  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2596,786,197 - 96,786,401 (+)MAPPERmRatBN7.2
Rnor_6.05100,460,260 - 100,460,463NCBIRnor6.0
Rnor_5.05104,491,036 - 104,491,239UniSTSRnor5.0
RGSC_v3.45101,206,254 - 101,206,457UniSTSRGSC3.4
Celera595,341,780 - 95,341,983UniSTS
RH 3.4 Map5748.5UniSTS
Cytogenetic Map5q31UniSTS
MARC_17865-17866:1025013775:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2596,765,165 - 96,765,652 (+)MAPPERmRatBN7.2
Rnor_6.05100,439,226 - 100,439,712NCBIRnor6.0
Rnor_5.05104,470,079 - 104,470,565UniSTSRnor5.0
RGSC_v3.45101,184,402 - 101,184,888UniSTSRGSC3.4
Celera595,321,062 - 95,321,548UniSTS
Cytogenetic Map5q31UniSTS
Nfib  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2596,963,422 - 96,963,474 (+)MAPPERmRatBN7.2
Rnor_6.05100,637,407 - 100,637,458NCBIRnor6.0
Rnor_5.05104,666,462 - 104,666,513UniSTSRnor5.0
RGSC_v3.45101,400,404 - 101,400,455UniSTSRGSC3.4
Celera595,518,449 - 95,518,500UniSTS
Cytogenetic Map5q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 39 59 6 314 139 11 150 92 97 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001398938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001398939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB012230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB012231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB012232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF112457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000013092   ⟹   ENSRNOP00000013092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl596,764,653 - 96,972,982 (-)Ensembl
Rnor_6.0 Ensembl5100,439,082 - 100,647,298 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000067435   ⟹   ENSRNOP00000060839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl596,765,022 - 96,975,479 (-)Ensembl
Rnor_6.0 Ensembl5100,439,476 - 100,647,727 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000067538   ⟹   ENSRNOP00000063791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5101,805,168 - 102,019,945 (-)Ensembl
mRatBN7.2 Ensembl596,790,074 - 96,972,982 (-)Ensembl
Rnor_6.0 Ensembl5100,439,082 - 100,647,298 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104453   ⟹   ENSRNOP00000087113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl596,764,653 - 96,975,479 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110522   ⟹   ENSRNOP00000084432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl596,765,022 - 96,975,479 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000134746   ⟹   ENSRNOP00000111591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5101,805,168 - 102,019,945 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000148312   ⟹   ENSRNOP00000109289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5101,805,168 - 102,013,813 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000149928   ⟹   ENSRNOP00000108916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5101,805,168 - 102,019,945 (-)Ensembl
RefSeq Acc Id: NM_001398938   ⟹   NP_001385867
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,019,945 (-)NCBI
mRatBN7.2596,759,208 - 96,974,001 (-)NCBI
RefSeq Acc Id: NM_001398939   ⟹   NP_001385868
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,019,945 (-)NCBI
mRatBN7.2596,759,208 - 96,974,001 (-)NCBI
RefSeq Acc Id: NM_031566   ⟹   NP_113754
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,019,945 (-)NCBI
mRatBN7.2596,759,208 - 96,974,001 (-)NCBI
Rnor_6.05100,439,077 - 100,647,298 (-)NCBI
Rnor_5.05104,464,121 - 104,676,709 (-)NCBI
RGSC_v3.45101,184,253 - 101,409,907 (-)RGD
Celera595,320,913 - 95,528,007 (-)RGD
Sequence:
RefSeq Acc Id: XM_006238335   ⟹   XP_006238397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,020,618 (-)NCBI
mRatBN7.2596,759,208 - 96,973,092 (-)NCBI
Rnor_6.05100,436,343 - 100,647,962 (-)NCBI
Rnor_5.05104,464,121 - 104,676,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763762   ⟹   XP_008761984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,013,522 (-)NCBI
mRatBN7.2596,759,208 - 96,967,788 (-)NCBI
Rnor_6.05100,436,343 - 100,641,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593197   ⟹   XP_017448686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,013,522 (-)NCBI
mRatBN7.2596,759,208 - 96,967,789 (-)NCBI
Rnor_6.05100,436,343 - 100,641,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593198   ⟹   XP_017448687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,013,521 (-)NCBI
mRatBN7.2596,759,208 - 96,967,790 (-)NCBI
Rnor_6.05100,439,693 - 100,641,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593199   ⟹   XP_017448688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,013,521 (-)NCBI
mRatBN7.2596,759,208 - 96,967,788 (-)NCBI
Rnor_6.05100,436,343 - 100,641,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593200   ⟹   XP_017448689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,013,516 (-)NCBI
mRatBN7.2596,759,208 - 96,967,776 (-)NCBI
Rnor_6.05100,436,343 - 100,641,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039109354   ⟹   XP_038965282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,013,520 (-)NCBI
mRatBN7.2596,759,208 - 96,967,783 (-)NCBI
RefSeq Acc Id: XM_039109355   ⟹   XP_038965283
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,020,618 (-)NCBI
mRatBN7.2596,759,208 - 96,973,092 (-)NCBI
RefSeq Acc Id: XM_039109357   ⟹   XP_038965285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,012,378 (-)NCBI
mRatBN7.2596,759,208 - 96,966,513 (-)NCBI
RefSeq Acc Id: XM_063287247   ⟹   XP_063143317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,020,618 (-)NCBI
RefSeq Acc Id: XM_063287249   ⟹   XP_063143319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85101,805,168 - 102,012,378 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001385867 (Get FASTA)   NCBI Sequence Viewer  
  NP_001385868 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416496 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416497 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416498 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416499 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416500 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416501 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416502 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416503 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416504 (Get FASTA)   NCBI Sequence Viewer  
  NP_113754 (Get FASTA)   NCBI Sequence Viewer  
  XP_006238397 (Get FASTA)   NCBI Sequence Viewer  
  XP_008761984 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448686 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448687 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448688 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448689 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965282 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965283 (Get FASTA)   NCBI Sequence Viewer  
  XP_038965285 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143317 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143319 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF23586 (Get FASTA)   NCBI Sequence Viewer  
  BAA25290 (Get FASTA)   NCBI Sequence Viewer  
  BAA25291 (Get FASTA)   NCBI Sequence Viewer  
  BAA25292 (Get FASTA)   NCBI Sequence Viewer  
  EDM10469 (Get FASTA)   NCBI Sequence Viewer  
  EDM10470 (Get FASTA)   NCBI Sequence Viewer  
  EDM10471 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000063791
  ENSRNOP00000063791.3
  ENSRNOP00000108916
  ENSRNOP00000108916.1
  ENSRNOP00000109289
  ENSRNOP00000109289.1
  ENSRNOP00000111591
  ENSRNOP00000111591.1
RefSeq Acc Id: NP_113754   ⟸   NM_031566
- Peptide Label: isoform 2
- UniProtKB: O70186 (UniProtKB/TrEMBL),   F7F711 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238397   ⟸   XM_006238335
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008761984   ⟸   XM_008763762
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017448689   ⟸   XM_017593200
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017448688   ⟸   XM_017593199
- Peptide Label: isoform X5
- UniProtKB: F7F711 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448686   ⟸   XM_017593197
- Peptide Label: isoform X1
- UniProtKB: F7END1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448687   ⟸   XM_017593198
- Peptide Label: isoform X4
- Sequence:
Ensembl Acc Id: ENSRNOP00000060839   ⟸   ENSRNOT00000067435
Ensembl Acc Id: ENSRNOP00000063791   ⟸   ENSRNOT00000067538
Ensembl Acc Id: ENSRNOP00000013092   ⟸   ENSRNOT00000013092
RefSeq Acc Id: XP_038965283   ⟸   XM_039109355
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038965282   ⟸   XM_039109354
- Peptide Label: isoform X6
- UniProtKB: F7END1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965285   ⟸   XM_039109357
- Peptide Label: isoform X10
Ensembl Acc Id: ENSRNOP00000084432   ⟸   ENSRNOT00000110522
Ensembl Acc Id: ENSRNOP00000087113   ⟸   ENSRNOT00000104453
RefSeq Acc Id: NP_001385868   ⟸   NM_001398939
- Peptide Label: isoform 3
- UniProtKB: O70187 (UniProtKB/TrEMBL),   A0A8I5ZX78 (UniProtKB/TrEMBL),   F7END1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385867   ⟸   NM_001398938
- Peptide Label: isoform 1
- UniProtKB: F1LLY9 (UniProtKB/TrEMBL),   O70185 (UniProtKB/TrEMBL),   F7F711 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143317   ⟸   XM_063287247
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063143319   ⟸   XM_063287249
- Peptide Label: isoform X11
Ensembl Acc Id: ENSRNOP00000109289   ⟸   ENSRNOT00000148312
Ensembl Acc Id: ENSRNOP00000108916   ⟸   ENSRNOT00000149928
Ensembl Acc Id: ENSRNOP00000111591   ⟸   ENSRNOT00000134746
Protein Domains
CTF/NF-I

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70185-F1-model_v2 AlphaFold O70185 1-561 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693820
Promoter ID:EPDNEW_R4341
Type:single initiation site
Name:Nfib_1
Description:nuclear factor I/B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05100,647,698 - 100,647,758EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62015 AgrOrtholog
BioCyc Gene G2FUF-40904 BioCyc
Ensembl Genes ENSRNOG00000009795 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067538 ENTREZGENE
  ENSRNOT00000067538.5 UniProtKB/TrEMBL
  ENSRNOT00000134746 ENTREZGENE
  ENSRNOT00000134746.1 UniProtKB/TrEMBL
  ENSRNOT00000148312 ENTREZGENE
  ENSRNOT00000148312.1 UniProtKB/TrEMBL
  ENSRNOT00000149928 ENTREZGENE
  ENSRNOT00000149928.1 UniProtKB/TrEMBL
InterPro CTF/NFI UniProtKB/TrEMBL
  CTF/NFI_DNA-bd-dom UniProtKB/TrEMBL
  CTF/NFI_DNA-bd_CS UniProtKB/TrEMBL
  CTF/NFI_DNA-bd_N UniProtKB/TrEMBL
  MAD_homology1_Dwarfin-type UniProtKB/TrEMBL
NCBI Gene 29227 ENTREZGENE
PANTHER CTF_NFI UniProtKB/TrEMBL
  NUCLEAR FACTOR 1 B-TYPE UniProtKB/TrEMBL
Pfam CTF_NFI UniProtKB/TrEMBL
  MH1 UniProtKB/TrEMBL
  NfI_DNAbd_pre-N UniProtKB/TrEMBL
PhenoGen Nfib PhenoGen
PROSITE CTF_NFI_1 UniProtKB/TrEMBL
  CTF_NFI_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009795 RatGTEx
SMART DWA UniProtKB/TrEMBL
TIGR TC229476
UniProt A0A8I5ZX78 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFY4 ENTREZGENE
  A0A8J8YK50 ENTREZGENE
  A0ABK0LET0_RAT UniProtKB/TrEMBL
  A0ABK0LYJ7_RAT UniProtKB/TrEMBL
  A0ABK0M4W7_RAT UniProtKB/TrEMBL
  A6J836 ENTREZGENE, UniProtKB/TrEMBL
  F1LLY9 ENTREZGENE
  F7END1 ENTREZGENE
  F7F711 ENTREZGENE
  O70185 ENTREZGENE, UniProtKB/TrEMBL
  O70186 ENTREZGENE, UniProtKB/TrEMBL
  O70187 ENTREZGENE
  Q9QY88_RAT UniProtKB/TrEMBL
UniProt Secondary F1LLY9 UniProtKB/TrEMBL
  F7F711 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Nfib  nuclear factor I/B      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_product member of a family of olfactory epithelium transcription factors 633408