Mcs24 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Mcs24 (Mammary carcinoma susceptibility QTL 24) Rattus norvegicus

Symbol: Mcs24
Name: Mammary carcinoma susceptibility QTL 24
RGD ID: 2290005
Previously known as: Mcs5a2
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor number   (CMO:0000343)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2564,719,390 - 109,719,390RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0568,838,385 - 113,838,385RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0572,784,931 - 117,784,931RGDRnor5.0
RGSC_v3.4570,181,758 - 115,181,758RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: WKY/NHsd WF/NHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Frmpd1 is a candidate Gene for Mcs24
Fbxo10 is a candidate Gene for Mcs24

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
WF/NHsd  (IEA)
WKY/NHsd  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Rat Mcs5a is a compound quantitative trait locus with orthologous human loci that associate with breast cancer risk. Samuelson DJ, et al., Proc Natl Acad Sci U S A. 2007 Apr 2; 104(15):6299-304.
Related QTLs

Related QTL Description Reference
Mcs12 sub_region RGD:1601189


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1562799Cylc2cylicin 256555432065576251Rat
1598042Gemin8-ps9gem (nuclear organelle) associated protein 8, pseudogene 956573527265735956Rat
41272998LOC120103341small nucleolar RNA SNORA1756602623666026348Rat
1597991Sod2-ps1superoxide dismutase 2, pseudogene 156625852666259065Rat
1586077Btbd10-ps2BTB domain containing 10, pseudogene 256651324066514662Rat
2324538Ola1-ps1Obg-like ATPase 1, pseudogene 156660184566602611Rat
1587377Hspa8-ps27heat shock protein family A (Hsp70) member 8, pseudogene 2756660632766608257Rat
1594316Rps6-ps10ribosomal protein S6, pseudogene 1056668085366681691Rat
1305227Smc2structural maintenance of chromosomes 256680688266853478Rat
40926645LOC120103314small nucleolar RNA SNORA1756688363866883766Rat
1309291Toporsltopoisomerase I binding, arginine/serine-rich like56699808367000642Rat
41329014LOC120103196U6 spliceosomal RNA56712440067124500Rat
41361886LOC120102877uncharacterized LOC12010287756719190567195516Rat
1332764Or13f5l1olfactory receptor family 13 subfamily F member 5 like 156722777467228733Rat
1583730Or13f5olfactory receptor family 13 subfamily F member 556724174967242708Rat
1333279Or8i8-ps1olfactory receptor family 8 subfamily I member 8, pseudogene 156726430467264919Rat
1333321Or13c3colfactory receptor family 13 subfamily C member 3C56727844467279397Rat
1333133Or13c3eolfactory receptor family 13 subfamily C member 3E56730562067306573Rat
402194917Olr846-ps1olfactory receptor pseudogene 846, pseudogene 156733715267340910Rat
6487777Or13c3bolfactory receptor family 13 subfamily C member 3B56737248967373466Rat
1333384Or13c3folfactory receptor family 13 subfamily C member 3F56740215767403110Rat
1332933Or13c3golfactory receptor family 13 subfamily C member 3G56742361867424571Rat
1332612Or13c3olfactory receptor family 13 subfamily C member 356745575167456701Rat
1333398Or13c25olfactory receptor family 13 subfamily C member 2556751869167519650Rat
1333551Or13c9olfactory receptor family 13 subfamily C member 956755571867556668Rat
1334138Or13d1olfactory receptor family 13 subfamily D member 156758930667590244Rat
41377042LOC120103354U6atac minor spliceosomal RNA56760131267601439Rat
1583223Nipsnap3anipsnap homolog 3A (C. elegans)56761399367625067Rat
1359688Nipsnap3bnipsnap homolog 3B56763764467669698Rat
631344Abca1ATP binding cassette subfamily A member 156767826767801162Rat
9340681LOC103692353uncharacterized LOC10369235356784980867858913Rat
41259190Rpl36a-ps12ribosomal protein L36A, pseudogene 1256795430567958398Rat
1597744Rps23-ps8ribosomal protein S23, pseudogene 856800625968006756Rat
7499527LOC102551410uncharacterized LOC10255141056802042068030171Rat
41336381LOC120102879uncharacterized LOC12010287956802166368030631Rat
621426Slc44a1solute carrier family 44 member 156806194168241912Rat
7555191LOC102551474uncharacterized LOC10255147456811484168145983Rat
1564809Fsd1lfibronectin type III and SPRY domain containing 1-like56825887768334931Rat
2322103Cbx3l2chromobox 3 like 256828055868281429Rat
1310087Fktnfukutin56833980368396412Rat
1596467Tal2TAL bHLH transcription factor 256841101268417569Rat
1305703Tmem38btransmembrane protein 38B56846030468496026Rat
7525226Plet1-ps1placenta expressed transcript 1, pseudogene 156847472768477394Rat
41253762LOC120103313small nucleolar RNA SNORA1756854841868548540Rat
1564956Chp1l1calcineurin-like EF-hand protein 1 like 156857089468571875Rat
1595137Hint1l1histidine triad nucleotide binding protein 1 like 156863483968635405Rat
41248950LOC120103343small nucleolar RNA SNORA1756865391268654044Rat
41212488LOC120103151uncharacterized LOC12010315156914468869153641Rat
2324157Rpl18-ps2ribosomal protein L18, pseudogene 256937553669376103Rat
41215818LOC120103303small nucleolar RNA SNORA1756943219369432324Rat
41122531LOC120102880uncharacterized LOC12010288056949405369506142Rat
1594562Crat-ps1carnitine O-acetyltransferase, pseudogene 156952910069531269Rat
40933017LOC120103152cytochrome c oxidase subunit 6B1-like56964624769646803Rat
1562123Zfp462zinc finger protein 46256967008569810729Rat
2321090Gpx8-ps1glutathione peroxidase 8, pseudogene 156984410869844745Rat
40972487Trnal-aag10transfer RNA leucine (anticodon AAG) 1056986995869870038Rat
1562958Rad23bRAD23 homolog B, nucleotide excision repair protein57009023270128340Rat
621445Klf4KLF transcription factor 457027884370283751Rat
40962879LOC12010306940S ribosomal protein S18-like57028434770316393Rat
41386911LOC120103361U2 spliceosomal RNA57030731870307431Rat
41309963LOC120103301small nucleolar RNA SNORA1757030955770309688Rat
40960952LOC120102882uncharacterized LOC12010288257046003770477599Rat
7643335LOC102553326uncharacterized LOC10255332657084070370847771Rat
41155819LOC120103062uncharacterized LOC12010306257103473071037178Rat
41028138LOC120103269small nucleolar RNA SNORA557113206671132150Rat
1584966Sec24c-ps1SEC24 homolog C, COPII coat complex component, pseudogene 157139498671407245Rat
7589034LOC102553455uncharacterized LOC10255345557141076071414956Rat
1305655Actl7bactin-like 7b57144553271446920Rat
1304697Actl7aactin-like 7a57144744771450440Rat
620072Elp1elongator acetyltransferase complex subunit 157145333871505833Rat
1594560Abitramactin binding transcription modulator57150584871524224Rat
1311434Ctnnal1catenin alpha-like 157151434071569431Rat
1308958Tmem245transmembrane protein 24557157095271647915Rat
2325586Mir32microRNA 3257159608371596152Rat
1309978Frrs1lferric-chelate reductase 1-like57165591171690132Rat
1562988Epb41l4berythrocyte membrane protein band 4.1 like 4B57169170671852583Rat
1311363Ptpn3protein tyrosine phosphatase, non-receptor type 357190852072027323Rat
11365609LOC108350978uncharacterized LOC10835097857195962271960619Rat
7685874LOC102556038uncharacterized LOC10255603857205669372060103Rat
6497715LOC100910620uncharacterized LOC10091062057209458272101070Rat
41025292Smarce1-ps8SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseudogene 857218614672200555Rat
1305135Pakapparalemmin A kinase anchor protein57231364672450645Rat
40948141LOC120103234U6 spliceosomal RNA57250483872504938Rat
41038197LOC120103299small nucleolar RNA SNORA1757020966370209794Rat
40929885Rpsa-ps3ribosomal protein SA, pseudogene 357112474671125687Rat
41205132LOC120102883uncharacterized LOC12010288357210115572115231Rat
1305135Pakapparalemmin A kinase anchor protein57253698672648524Rat
1589037C5h9orf152similar to human chromosome 9 open reading frame 15257266057372667941Rat
621157Txn1thioredoxin 157271233472724564Rat
7523626LOC102556461uncharacterized LOC10255646157272487472742702Rat
1303121Txndc8thioredoxin domain containing 857274970872785858Rat
11464753LOC108351128uncharacterized LOC10835112857278598072792102Rat
1588987Svep1sushi, von Willebrand factor type A, EGF and pentraxin domain containing 157281120072988185Rat
7708637LOC102546532uncharacterized LOC10254653257281555872823891Rat
3211Muskmuscle associated receptor tyrosine kinase57305842773169696Rat
75506704930522L14RiklRIKEN cDNA 4930522L14 gene like57309120573091526Rat
620563Lpar1lysophosphatidic acid receptor 157322904773347874Rat
41404093LOC120103153uncharacterized LOC12010315357349116173494563Rat
2323431Bex1-ps1brain expressed, X-linked 1, pseudogene 157350552773505906Rat
1332920Or2k2olfactory receptor family 2 subfamily K member 257358268673583627Rat
1306148EcpasEcm29 proteasome adaptor and scaffold57360174573714026Rat
41334998Ndufa5-ps4NADH:ubiquinone oxidoreductase subunit A5, pseudogene 457365922373659587Rat
1586696Hspd1-ps10heat shock protein family D (Hsp60) member 1, pseudogene 1057372826073730198Rat
1586075Cct6a-ps4chaperonin containing Tcp1, subunit 6A (zeta 1), pseudogene 457373065473732638Rat
727958Zfp483zinc finger protein 48357376320173780511Rat
621195Ptgr1prostaglandin reductase 157378400073802624Rat
1561488Dnajc25DnaJ heat shock protein family (Hsp40) member C2557382556573847878Rat
41282557LOC120103300U2 spliceosomal RNA57384285573843025Rat
621514Gng10G protein subunit gamma 1057385612473863017Rat
1586646Shoc1shortage in chiasmata 157386442373956487Rat
621870UgcgUDP-glucose ceramide glucosyltransferase57403297874065701Rat
7529433LOC102551074uncharacterized LOC10255107457407691374089728Rat
1306966Susd1sushi domain containing 157415765374281171Rat
621671Ptbp3polypyrimidine tract binding protein 357431336774399439Rat
2320086Hnrnpa1-ps39heterogeneous nuclear ribonucleoprotein A1, pseudogene 3957439202074393768Rat
1305387Hsdl2hydroxysteroid dehydrogenase like 257444393374479104Rat
41261574LOC120103353small nucleolar RNA SNORD7557448345274483511Rat
41108935LOC120103243U7 small nuclear RNA57448812374488181Rat
1310951Kiaa1958KIAA1958 homolog57449176274637929Rat
41076485LOC120102886uncharacterized LOC12010288657451184374515127Rat
1307983InipINTS3 and NABP interacting protein57464839274662628Rat
41190661Trnas-aga22transfer RNA serine (anticodon AGA) 2257467176274671843Rat
1311367Snx30sorting nexin family member 3057468390274813013Rat
41324317Trnaa-agc81transfer RNA alanine (anticodon AGC) 8157473727474737355Rat
1310485Slc46a2solute carrier family 46, member 257480022674808128Rat
708508Obp3alpha-2u globulin PGCL457484231674845858Rat
41369930Zfp37-ps6zinc finger protein 37, pseudogene 657486333974895596Rat
708501Mup4l4major urinary protein 4 like 457490946874912890Rat
41225436LOC120102889major urinary protein-like57491752475569763Rat
2323040Zfp37-ps1zinc finger protein 37, pseudogene 157493033574960075Rat
735211Mup4major urinary protein 457496114374964686Rat
7682781Zfp37-ps4zinc finger protein 37, pseudogene 457497845374985589Rat
1583727Mup18major urinary protein 1857498681374990071Rat
41225607Mup4-ps6major urinary protein 4, pseudogene 657501439375016663Rat
1588799Mup4-ps7major urinary protein 4, pseudogene 757505917075061471Rat
9267319Mup4-ps8major urinary protein 4, pseudogene 857514215675145524Rat
735107Mup5major urinary protein 557520132475204903Rat
41362570Zfp37-ps5zinc finger protein 37, pseudogene 557521304975221201Rat
1566134Mup4l1major urinary protein 4 like 157522134075224797Rat
6495515Zfp37-ps2zinc finger protein 37, pseudogene 257530189275311574Rat
1593272Mup4l3major urinary protein 4 like 357531171375316792Rat
40999109Mup4-ps4major urinary protein 4, pseudogene 457539412375397484Rat
40994216Mup4-ps3major urinary protein 4, pseudogene 357542016175422438Rat
41286760Mup4-ps5major urinary protein 4, pseudogene 557557956475581856Rat
41209452Trnap-ggg4transfer RNA proline (anticodon GGG) 457558855575588628Rat
620723Zfp37zinc finger protein 3757559873275638896Rat
410096513110040M04Rikl2RIKEN cDNA 3110040M04 gene like 257565420575664531Rat
11514913LOC108350981uncharacterized LOC10835098157567230775691604Rat
1307963Slc31a2solute carrier family 31 member 257573800875748542Rat
1304816Fkbp15FKBP prolyl isomerase family member 1557575078675815038Rat
620059Slc31a1solute carrier family 31 member 157581474475844241Rat
1311342Cdc26cell division cycle 2657584485275859830Rat
1311303Prpf4pre-mRNA splicing tri-snRNP complex factor 457585993475873924Rat
1564412Rnf183ring finger protein 18357587711175886253Rat
1309367Wdr31WD repeat domain 3157589707475917461Rat
7534874LOC102547534uncharacterized LOC10254753457591749175921199Rat
708400BspryB-box and SPRY domain containing57592739775949585Rat
1585262Hdhd3haloacid dehalogenase-like hydrolase domain containing 357595130875954775Rat
2083Aladaminolevulinate dehydratase57596199375972334Rat
1359475Pole3DNA polymerase epsilon 3, accessory subunit57597394175977175Rat
1563460C5h9orf43similar to human chromosome 9 open reading frame 4357597729676002179Rat
6500827LOC10091001760S ribosomal protein L31-like57598578575986272Rat
3566Rgs3regulator of G-protein signaling 357602203876161895Rat
1561252Uchl3-ps2ubiquitin C-terminal hydrolase L3, pseudogene 257603749876038593Rat
41255465LOC120102895uncharacterized LOC12010289557616671976167330Rat
41324074LOC120102896uncharacterized LOC12010289657618489376187189Rat
1310743Zfp618zinc finger protein 61857639851476564837Rat
2102Ambpalpha-1-microglobulin/bikunin precursor57656809476578416Rat
1308487Kif12kinesin family member 1257659620476603261Rat
735115Col27a1collagen type XXVII alpha 1 chain57664730276765989Rat
2325417Mir455microRNA 45557668931376689390Rat
67390Orm1orosomucoid 157676663776776149Rat
1308202AknaAT-hook transcription factor57677741576824380Rat
7695413LOC102547858uncharacterized LOC10254785857680748576814704Rat
631330Whrnwhirlin57682830876911945Rat
11400923LOC108351093H/ACA ribonucleoprotein complex subunit 3 pseudogene57693498976936468Rat
1310088Atp6v1g1ATPase H+ transporting V1 subunit G157696146276967642Rat
1304595Tmem268transmembrane protein 26857697482777001457Rat
7697789LOC102553131uncharacterized LOC10255313157700793877011175Rat
1584073Tex48testis expressed 4857701716777033673Rat
41102148LOC120103204U6 spliceosomal RNA57704088277040985Rat
1586184Gapdh-ps110Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 11057709206177094437Rat
628735Tnfsf15TNF superfamily member 1557713488577156171Rat
11371333LOC108350984U6 snRNA-associated Sm-like protein LSm6 pseudogene57714581477155846Rat
1590403Tnfsf8TNF superfamily member 857725094277277364Rat
621057Tnctenascin C57737585177460712Rat
9234855LOC103692377uncharacterized LOC10369237757750867977564182Rat
1593270tuba1c-ps3tubulin, alpha 1C, pseudogene 357767917177681447Rat
41206721LOC120103331small nucleolar RNA SNORA1757782081177820944Rat
40946078LOC120103154uncharacterized LOC12010315457816128078184113Rat
1560180Eno1-ps16enolase 1, pseudogene 1657823847878242959Rat
1307742Pappapappalysin57849766078735873Rat
2320342Astn2astrotactin 257875814279744021Rat
1305238Trim32tripartite motif-containing 3257900513979016615Rat
41199365Rnu6-1015RNA, U6 small nuclear 101557930709979307205Rat
41173321H2az2-ps2H2A.Z variant histone 2, pseudogene 257972162879721952Rat
3870Tlr4toll-like receptor 458014586780159501Rat
41095319LOC120103275small nucleolar RNA SNORA4458024866580248782Rat
41251418LOC120103186U6 spliceosomal RNA58035941580359521Rat
1593269Rpl13-ps6ribosomal protein L13, pseudogene 658078316180783785Rat
1561195Rpl31-ps11ribosomal protein L31, pseudogene 1158108325981083651Rat
1597387Cyc1-ps1cytochrome c-1, pseudogene 158113645281138332Rat
2318318Tra2b-ps4transformer 2 beta, pseudogene 458161556381658762Rat
1583726Hspa8-ps11heat shock protein family A (Hsp70) member 8, pseudogene 1158201034882012966Rat
708519Brinp1BMP/retinoic acid inducible neural specific 158234850182550506Rat
11361552LOC108350985uncharacterized LOC10835098558255050182595277Rat
40998207LOC120102898uncharacterized LOC12010289858261444582621071Rat
41071177LOC120103201U6 spliceosomal RNA58269977582699881Rat
2318120Chac2-ps4ChaC glutathione specific gamma-glutamylcyclotransferase 2, pseudogene 458285086782862378Rat
41330673LOC120102899uncharacterized LOC12010289958352735783609586Rat
708451Cdk5rap2CDK5 regulatory subunit associated protein 258379228283961129Rat
41186256LOC120102900uncharacterized LOC12010290058396088483976651Rat
1308330Megf9multiple EGF-like-domains 958399356584105622Rat
9685074Mir3084cmicroRNA 3084c58417737584177443Rat
2324484Sppl3-ps1signal peptide peptidase like 3, pseudogene 158426997084278377Rat
1585621Rgccl1regulator of cell cycle like 158428089784281785Rat
9106595LOC103692379small ubiquitin-related modifier 3 pseudogene58527277285273104Rat
6491129Slc25a4-ps1solute carrier family 25 member 4, pseudogene 158540968985410315Rat
41169748LOC120103074uncharacterized LOC12010307458543843585440033Rat
11383413LOC108351095serine/arginine repetitive matrix protein 1-like58544262085444118Rat
413197023110040M04Rikl6RIKEN cDNA 3110040M04 gene like 658544663085448161Rat
409444813110040M04Rikl3RIKEN cDNA 3110040M04 gene like 358545186285453391Rat
41198326LOC120103077uncharacterized LOC12010307758545591285457437Rat
11433168LOC108351130uncharacterized LOC10835113058546400885465546Rat
410207263110040M04Rikl5RIKEN cDNA 3110040M04 gene like 558546807885469609Rat
41193095LOC120103080uncharacterized LOC12010308058547212485473655Rat
114872973110040M04Rikl1RIKEN cDNA 3110040M04 gene like 158547618585477725Rat
1592335Smarca2-ps2SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, pseudogene 258551439885523157Rat
41325019LOC120103336small nucleolar RNA SNORA1758566586285665987Rat
1309237Tle1TLE family member 1, transcriptional corepressor58585182785934806Rat
41197324LOC120103332small nucleolar RNA SNORA1758675458386754709Rat
2324113Zfp101l1zinc finger protein 101 like 158687095386873370Rat
2324063Oma1-ps1OMA1 zinc metallopeptidase, pseudogene 158691306886915146Rat
41357879LOC120103337small nucleolar RNA SNORA1758699225086992375Rat
41164090Rpl34-ps8ribosomal protein L34, pseudogene 858701752187020226Rat
1592267Rps18-ps6ribosomal protein S18, pseudogene 658725020087250683Rat
41145427LOC120103327small nucleolar RNA SNORA1758750390987504029Rat
1306418RasefRAS and EF hand domain containing58754890887619286Rat
41144701LOC120102901uncharacterized LOC12010290158759930187602345Rat
11502494LOC108351096dnaJ homolog subfamily B member 1 pseudogene58768168087682686Rat
13595842310002L09RiklRIKEN cDNA 2310002L09 like58769273387706183Rat
1304802Frmd3FERM domain containing 358776475588031091Rat
11381374LOC108350987COMM domain-containing protein 2 pseudogene58802717288030854Rat
1562410Dppa3-ps2developmental pluripotency-associated 3, pseudogene 258809741888098963Rat
1307528Kdm4clysine demethylase 4C58810071088306821Rat
1589969Rpl9-ps24ribosomal protein L9, pseudogene 2458836086588361547Rat
41155933LOC120103302small nucleolar RNA SNORA1758857255288572680Rat
1589947Vom2r-ps76vomeronasal 2 receptor, pseudogene 7658869625688791737Rat
1309148Dmac1distal membrane arm assembly component 158924117389243793Rat
1589924Eef1g-ps16eukaryotic translation elongation factor 1 gamma, pseudogene 1658926144489263004Rat
2324835Mdh2-ps1malate dehydrogenase 2, pseudogene 158998218289984494Rat
1561090Ptprdprotein tyrosine phosphatase, receptor type, D59004699390698977Rat
41025543LOC120103209U6 spliceosomal RNA59060509090605193Rat
41013620Cog5-ps1component of oligomeric golgi complex 5, pseudogene 159064539790816683Rat
41344762Drg1-ps2developmentally regulated GTP binding protein 1, pseudogene 259089386490972201Rat
41309747LOC120103065uncharacterized LOC12010306559097382590991561Rat
1561090Ptprdprotein tyrosine phosphatase, receptor type, D59112235491641754Rat
7703644Ptprdlprotein tyrosine phosphatase, receptor type, D like59236841092380389Rat
41085030Zcchc9-ps3zinc finger CCHC-type containing 9, pseudogene 359239049992406353Rat
7558064LOC102555405uncharacterized LOC10255540559296352893021460Rat
1586073Ccdc47-ps1coiled-coil domain containing 47, pseudogene 159302161393023608Rat
41142637LOC120103155uncharacterized LOC12010315559306583793073188Rat
7746436LOC102555669uncharacterized LOC10255566959307964493197365Rat
2320392Pwp1-ps1PWP1 homolog, endonuclein, pseudogene 159323345393237397Rat
1563375Snrpn-ps4small nuclear ribonucleoprotein polypeptide N, pseudogene 459364967993650898Rat
9120358Hmgn4-ps6high mobility group nucleosomal binding domain 4, pseudogene 659405577094062563Rat
1587537Akr1b8-ps3aldo-keto reductase family 1, member B8, pseudogene 359428666894291222Rat
1587526Dkc1-ps3dyskerin pseudouridine synthase 1, pseudogene 359432124594322841Rat
1564021Rpl31-ps1ribosomal protein L31, pseudogene 159494831294948698Rat
41322042Fth1-ps2ferritin heavy chain 1, pseudogene 259508626195087200Rat
1586398Hpf1-ps1histone PARylation factor 1, pseudogene 159519946895200056Rat
41168764LOC120103291small nucleolar RNA SNORA4859520289795203037Rat
1593266Tyrp1tyrosinase-related protein 159528098295299516Rat
7509921LOC102556039uncharacterized LOC10255603959528349895314373Rat
1308059Lurap1lleucine rich adaptor protein 1-like59536200595409439Rat
1565987Fbxl18l1F-box and leucine-rich repeat protein 18 like 159546048095464873Rat
40972972LOC120102902protein PRRC2C-like59555314795562018Rat
11458786LOC108350991uncharacterized LOC10835099159566871795710953Rat
3105Mpdzmultiple PDZ domain crumbs cell polarity complex component59576611295920531Rat
40971150LOC120103321small nucleolar RNA SNORA1759583074095830865Rat
41044958LOC120103373U4 spliceosomal RNA59625456696254697Rat
41332442LOC120103156uncharacterized LOC12010315659638721896389315Rat
62015Nfibnuclear factor I/B59675920896974001Rat
6497980LOC100910558uncharacterized LOC10091055859697618197014187Rat
7694123LOC102551858uncharacterized LOC10255185859706604597072072Rat
11475977Trnah-gug10transfer RNA histidine (anticodon GUG) 1059708722797087298Rat
9408812LOC103692393uncharacterized LOC10369239359716511397170168Rat
1305750Zdhhc21zinc finger DHHC-type palmitoyltransferase 2159722762197286866Rat
1563046Cer1cerberus 1, DAN family BMP antagonist59730642797309783Rat
1306981Frem1Fras1 related extracellular matrix 159732126697469523Rat
7670779Dbf4-ps1DBF4 zinc finger, pseudogene 159742126497424352Rat
41016107LOC120103348small nucleolar RNA SNORA1759748166497481780Rat
7743271LOC102552278uncharacterized LOC10255227859751279797520488Rat
1305797Ttc39btetratricopeptide repeat domain 39B59760332997708103Rat
1586071Rps12-ps5ribosomal protein S12, pseudogene59773158297731984Rat
11405418Rps29-ps11ribosomal protein S29, pseudogene 1159776436997764539Rat
11499899LOC10835110140S ribosomal protein S17 pseudogene59779048697794517Rat
1583986Nsa2-ps12NSA2 ribosome biogenesis factor, pseudogene 1259780175197802605Rat
1305172Snapc3small nuclear RNA activating complex, polypeptide 359781782797868494Rat
631439Psip1PC4 and SRSF1 interacting protein 159784701097879280Rat
41129082Psip1lPC4 and SRSF1 interacting protein 1 like59787877297883186Rat
1560884Ccdc171coiled-coil domain containing 17159791996598403853Rat
40957686LOC120102904ladinin-1-like59825993498274752Rat
40974238LOC120103188U6 spliceosomal RNA59841452898414634Rat
11474955LOC108350993uncharacterized LOC10835099359847835098487366Rat
1310694Bnc2basonuclin zinc finger protein 259867907199016044Rat
41379561LOC120103247U7 small nuclear RNA59922995599230058Rat
9071259LOC103692399uncharacterized LOC10369239959925428299256197Rat
1308101Cntlncentlein59929586599576402Rat
1585925Ppia-ps11peptidylprolyl isomerase A, pseudogene 1159961185299612369Rat
620276Sh3gl2SH3 domain containing GRB2 like 2, endophilin A159965318999827500Rat
41170419Pgam1-ps6phosphoglycerate mutase 1, pseudogene 659968598999686573Rat
1306439Adamtsl1ADAMTS-like 1599964406100919786Rat
1583685Saxo1stabilizer of axonemal microtubules 15100937134101093308Rat
619804RragaRas-related GTP binding A5101113341101114936Rat
15203474Haus6HAUS augmin like complex subunit 65101116532101156396Rat
41394140Scarna8small Cajal body-specific RNA 85101124125101124255Rat
728889Plin2perilipin 25101156648101211738Rat
7660377LOC102547623uncharacterized LOC1025476235101226928101245243Rat
1308489Dennd4cDENN domain containing 4C5101272298101369529Rat
3602Rps6ribosomal protein S65101371716101374576Rat
1304629Acer2alkaline ceramidase 25101391830101442615Rat
628650Slc24a2solute carrier family 24 member 25101497916101741840Rat
11459931LOC108350995uncharacterized LOC1083509955102119628102128446Rat
620940Mllt3MLLT3, super elongation complex subunit5102259075102515447Rat
41316176LOC120103312small nucleolar RNA SNORA175102483194102483318Rat
1311849Focadfocadhesin5102564560102886587Rat
1310339Hacd43-hydroxyacyl-CoA dehydratase 45102887597102915376Rat
2865Ifnb1interferon beta 15103020758103021595Rat
1306334Ifna4interferon, alpha 45103069174103070120Rat
1306135Ifna1interferon, alpha 15103097356103097925Rat
1589875Ifna7l-ps1interferon, alpha 7 like, pseudogene 15103104672103105585Rat
41171666LOC120103203U6 spliceosomal RNA5103109366103109474Rat
1561246Ifna1l1interferon, alpha 1 like 15103144515103145269Rat
1359312Ifna5interferon, alpha 55103187852103188430Rat
1561827Ifna2l1interferon alpha 2 like 15103196737103197803Rat
1565225Ifna16l1interferon, alpha 16-like 15103216368103216984Rat
6487214LOC100912356interferon alpha-1-like5103227820103230500Rat
1311425Ifna2interferon alpha 25103258617103259195Rat
6502836LOC100909643interferon alpha-1-like5103273737103275988Rat
6487699LOC100912314interferon alpha-1-like5103285510103288640Rat
1559679Ifna4l2interferon, alpha 4 like 25103305221103305862Rat
41029367Rpl27a-ps12ribosomal protein L27a, pseudogene 125103328721103329166Rat
1304814Klhl9kelch-like family member 95103333747103337931Rat
1591738Rps24-ps10ribosomal protein S24, pseudogene 105103343786103344309Rat
41279671LOC120103158interferon alpha-12-like5103378576103379147Rat
41164037LOC120103159interferon alpha-12-like5103407135103407884Rat
41162071LOC120103160interferon alpha-12-like5103426092103427016Rat
41097131LOC120103161interferon alpha-12-like5103441204103442180Rat
40975974LOC120103162interferon alpha-1-like5103455380103455934Rat
1560539Ifna12linterferon alpha 12 like5103476362103477427Rat
41024711LOC120103163interferon alpha-12-like5103494442103495077Rat
41140167LOC120103164interferon alpha-12-like5103509610103510260Rat
6492384Ifna4l1interferon, alpha 4 like 15103524733103525302Rat
41074433LOC120103372U4 spliceosomal RNA5103532146103532302Rat
1565065Ifneinterferon, epsilon5103571630103572290Rat
329845494LOC130062807uncharacterized LOC1300628075103598328103627530Rat
4888605Mir3554microRNA 35545103599032103599149Rat
2325391Mir31microRNA 315103599038103599143Rat
329845392LOC130062808uncharacterized LOC1300628085103627694103629756Rat
1583723Nmt1-ps1N-myristoyltransferase 1, pseudogene 15103658873103662295Rat
11413299LOC108350998uncharacterized LOC1083509985103757997103779881Rat
2318341C5h9orf85similar to human chromosome 9 open reading frame 855103767094103767986Rat
1310114Mtapmethylthioadenosine phosphorylase5103874460103920684Rat
41034517Gskip-ps1GSK3B interacting protein, pseudogene 15103941903103943310Rat
2323Cdkn2acyclin-dependent kinase inhibitor 2A5103984949103992143Rat
2324Cdkn2bcyclin-dependent kinase inhibitor 2B5104009839104019082Rat
7697358LOC102552523uncharacterized LOC1025525235104019105104127037Rat
1588220Hspd1-ps14heat shock protein family D (Hsp60) member 1, pseudogene 145104129384104131678Rat
41260363LOC120102910uncharacterized LOC1201029105104171383104185974Rat
9404082LOC103692411uncharacterized LOC1036924115104410856104415793Rat
1309796Dmrta1DMRT-like family A15104415893104422433Rat
1584925Lmntd1-ps1lamin tail domain containing 1, pseudogene 15104595779104597302Rat
1560729Rps24-ps18ribosomal protein S24, pseudogene 185104729321104730083Rat
1563227Zfp352zinc finger protein 3525104946243104948087Rat
1310095Zfp353zinc finger protein 3535105075075105076667Rat
1583722Eef1g-ps13eukaryotic translation elongation factor 1 gamma, pseudogene 135105085925105111382Rat
1585888Vdac1-ps2voltage-dependent anion channel 1, pseudogene 25105313273105321698Rat
41388855Rnu6-698RNA, U6 small nuclear 6985105346075105346181Rat
6498356Ktn1-ps1kinectin 1, pseudogene 15105565480105575498Rat
41255483Ppia-ps8peptidylprolyl isomerase A, pseudogene 85105600882105603060Rat
41097241LOC120103318small nucleolar RNA SNORA175105738478105738609Rat
1584923Rps7-ps19ribosomal protein S7, pseudogene 195105902114105902692Rat
628611Elavl2ELAV like RNA binding protein 25105960872106086463Rat
41069231LOC120103166uncharacterized LOC1201031665106108110106109796Rat
41143086LOC120103387U6 spliceosomal RNA5106129987106130093Rat
7592700LOC102554351uncharacterized LOC1025543515106358753106371776Rat
6498231Hspd1-ps33heat shock protein family D (Hsp60) member 1, pseudogene 335106398781106403426Rat
2324467Izumo3IZUMO family member 35106874321106876978Rat
11416818LOC108351001uncharacterized LOC1083510015106877052106903186Rat
1560983Hnrnpa1-ps24heterogeneous nuclear ribonucleoprotein A1, pseudogene 245106906066106907230Rat
2323226Spcs2-ps1signal peptidase complex subunit 2, pseudogene 15106913633106915036Rat
1583529Cks1lCDC28 protein kinase regulatory subunit 1-like5106982443106983182Rat
1561150Hspd1l2heat shock protein family D (Hsp60) member 1 like 25107131587107131895Rat
41136247Rpl5-ps11ribosomal protein L5, pseudogene 115107212048107217257Rat
41394794LOC120103236U6 spliceosomal RNA5107652473107652571Rat
1592090Snu13-ps4small nuclear ribonucleoprotein 13, pseudogene 45107912017107912407Rat
41074883Tusc1tumor suppressor candidate 15108089952108091315Rat
7543605LOC102546952uncharacterized LOC1025469525108270998108359486Rat
41358010Rpl19-ps7ribosomal protein L19, pseudogene 75108333257108335787Rat
9284656LOC103692415uncharacterized LOC1036924155108723428108734153Rat
41215040LOC120102919uncharacterized LOC1201029195108831467108907138Rat
1560251Caap1caspase activity and apoptosis inhibitor 15109313253109414323Rat
40937684LOC120102920uncharacterized LOC1201029205109330329109338769Rat
621245Plaaphospholipase A2, activating protein5109428600109460373Rat
1359704Ift74intraflagellar transport 745109460372109563839Rat
1591722Lrrc19leucine rich repeat containing 195109494891109507948Rat
2325363Mir872microRNA 8725109539086109539166Rat
620980TekTEK receptor tyrosine kinase5109607077109733805Rat
7540511LOC102550849uncharacterized LOC10255084957395654973963604Rat
41225041Mup4-ps2major urinary protein 4, pseudogene 257546285575472666Rat
11403548Mup4-ps1major urinary protein 4, pseudogene 157546285575498898Rat
11518618LOC108351129uncharacterized LOC10835112958218638382197382Rat
412384113110040M04Rikl4RIKEN cDNA 3110040M04 gene like 458545995885461489Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10321D5Lev171235103991975103992098Ratregion
10931D5Wox1322657516579275166041Ratregion
33921D5Mit219456928513369285327Ratregion
33967D5Mit330058108229081082586Ratregion
33981D5Mit426659045014490450412Ratregion
33985D5Mit1114558361072983610862Ratregion
34041D5Mit51445104250862104251008Ratregion
34057D5Mit1713557196353371963668Ratregion
34144D5Mgh1114657425132074251464Ratregion
34170D5Mgh2412457830912778309253Ratregion
34216D5Mgh614456898430768984447Ratregion
36135D5Rat2016858463946784639641Ratregion
37440D5Rat8412956954029569540447Ratregion
37680D5Rat6423959793714997937392Ratregion
37684D5Rat7620056558701265587212Ratregion
37690D5Rat9223859559615095596396Ratregion
37772DXRat532795103857355103857402Ratregion
36482D5Rat1215256785677667856928Ratregion
36558D5Rat1916858672382786724018Ratregion
36634D5Rat1713158145011481450254Ratregion
36689D5Rat1414157599664575996794Ratregion
34953D5Rat1515257710834477108498Ratregion
35032D5Rat1816058886887988869033Ratregion
35074D5Rat232055102084761102084960Ratregion
35144D5Rat1316857338076273380925Ratregion
35577D5Rat2116659511206595112231Ratregion
35771D5Rat2216559757016597570330Ratregion
35785D5Rat242965101278414101278701Ratregion
35961D5Rat5318859921653999216724Ratregion
39644D5Rat14420057454650474546700Ratregion
39738D5Rat18219057196353271963722Ratregion
39796D5Rat15023659607117596071342Ratregion
38308D5Rat10716159040530290405423Ratregion
40384D5Rat18313059628554396285673Ratregion
40574D5Rat19615059948599799486133Ratregion
38508D5Rat602465101467719101467963Ratregion
38546D5Rat6823858163002581630249Ratregion
38700D5Rat8524758592266185922904Ratregion
38740D5Rat11321057348379673483994Ratregion
38768D5Rat10014856617408066174226Ratregion
38848D5Rat8823659528829395288541Ratregion
39150D5Rat10420056925722469257424Ratregion
39224D5Rat9822959577419495774399Ratregion
39252D5Rat7523457405864074058878Ratregion
39344D5Rat14323757480875974809008Ratregion
39378D5Rat14920459705976097059958Ratregion
39402D5Rat13924656856377068564008Ratregion
42747D5Rat22822257136600871366215Ratregion
42748D5Rat22921357413420674134408Ratregion
42749D5Rat23024157944341179443657Ratregion
42750D5Rat23123759988536199885595Ratregion
42765D5Rat25822158534999385350219Ratregion
41192D5Rat1522205102816790102817014Ratregion
41206D5Rat14614957733153277331679Ratregion
41314D5Rat14116156807141868071553Ratregion
41318D5Rat14713358239439282394565Ratregion
42319D5Rat2562405108938288108938528Ratregion
41560D5Rat1531635103689353103689768Ratregion
41560D5Rat1531635103689674103690167Ratregion
41560D5Rat1531635103689997103690167Ratregion
41576D5Rat15115959975354899753708Ratregion
41776D5Rat21121459161836791618574Ratregion
44552D9Wox211365109552936109552993Ratregion
43730D3Got12414957127070771270856Ratregion
43895D5Got618556776813267768317Ratregion
43896D5Got13810456635427166354375Ratregion
43897D5Got12325056928512869285378Ratregion
43901D5Wox515457464717274647338Ratregion
43906D5Got1023457645349476453730Ratregion
43907D5Got1221557747701677477231Ratregion
43908D5Got1125857749607877496333Ratregion
43909D5Got1427857780413377804411Ratregion
43910D5Got1527657821351378213789Ratregion
43911D5Got1917557793466977934844Ratregion
43913D5Got1715557895312778953282Ratregion
43914D5Got1816657903139279031558Ratregion
43915D5Got1613457961481279614946Ratregion
43917D5Got2017758183724581837422Ratregion
43918D5Got2222958247860682478831Ratregion
43919D5Got12417358253949782539670Ratregion
43920D5Got2319658376654383766739Ratregion
43921D5Got12622458499908584999311Ratregion
43922D5Got2112558528618185286306Ratregion
43923D5Got12516158592818985928350Ratregion
43928D5Wox312059485897294859095Ratregion
43929D5Got12823659682413896824374Ratregion
43930D5Wox415759860287098603051Ratregion
43932D5Got12914959961461499614763Ratregion
43934D5Got301335100749175100749308Ratregion
43935D5Got281395101660429101660568Ratregion
43936D5Got1311535101112265101112414Ratregion
43940D5Got271705104607788104607958Ratregion
43943D5Got361265109141749109141875Ratregion
45054D13Got229459354117093542503Ratregion
60477D5Got1312357764058877640711Ratregion
60479D5Got2413259145437491454506Ratregion
60480D5Got251255106732222106732345Ratregion
60481D5Got312325101703657101703889Ratregion
60808D5Wox251585109050865109051012Ratregion
69510D5Uwm2018157614628376146472Ratregion
69511D5Uwm2113257720142777201563Ratregion
69513D5Uwm2213757834116978341308Ratregion
69515D5Uwm231865101607489101607673Ratregion
69519D5Uwm251865101387969101388153Ratregion
69521D5Uwm261335101847538101847681Ratregion
69523D5Uwm271455103005080103005247Ratregion
69525D5Uwm281445105629979105630117Ratregion
69527D5Uwm291635109719127109719390Ratregion
69556D5Uwm5215557054955870549930Ratregion
69556D5Uwm5215557054976370549930Ratregion
69560D5Uwm1716756676865566768840Ratregion
69566D5Uwm1916157264574772645916Ratregion
625776D5Got916256503376365033927Ratregion
62484D5Uia21335105221933105222066Ratregion
62505D5Uia536058224118482241537Ratregion
66444D5Uia123925107521767107522145Ratregion
629614D5Hmgc11675101374078101374246Ratregion
629631D5Hmgc222657516579275166041Ratregion
66643D5Mco1715456822800968228173Ratregion
66700D5Mco3312858648036786480495Ratregion
67270D5Arb28158651684186516922Ratregion
67273D5Arb631157086653770866848Ratregion
67274D5Arb826257677548776775749Ratregion
67766D5Uwm112458952483989524947Ratregion
67768D5Uwm212059661487496614994Ratregion
1630234D5Got27221758736218087362397Ratregion
1631434D5Got30021457081264770812861Ratregion
1631934D5Got28722359099380990994032Ratregion
1632130D5Got26712159825660098256721Ratregion
1582002D5Uwm6127458081311680813390Ratregion
1582004D5Uwm6825057404727274047522Ratregion
1582030D5Uwm6622056992728369927503Ratregion
1582044D5Uwm6727257636977676370048Ratregion
1627770D5Wox415101502201101502377Ratregion
1582058D5Uwm6027957294340072943679Ratregion
1628964D5Got26618456558474265584926Ratregion
1629160D5Got23112357225265272252775Ratregion
1629201D5Got30210859795059497950697Ratregion
1629848D5Got2919459733135197331445Ratregion
1630039D5Got29614958295380182953950Ratregion
1638901D5Got3139857793469977934797Ratregion
1639076D5Got2378758529613985296226Ratregion
1639577D5Got30917458329499883295169Ratregion
1639759D5Got23421757054119870541415Ratregion
1632630D5Got23818359120129891201464Ratregion
1633165D5Got25815157129913071299276Ratregion
1640190D5Got31226459579395095794214Ratregion
1640209D5Got23213757377321873773355Ratregion
1635459D5Got27327458145238181452653Ratregion
1635679D5Wox4218857406338874063576Ratregion
1635885D5Got2431275107474818107474945Ratregion
1636554D5Got25418359219051992190702Ratregion
1636654D5Got29016457907160179071767Ratregion
1636896D5Got25622159586086995861088Ratregion
1637413D5Got28612357219574072195863Ratregion
1633869D5Got2579859828456498284662Ratregion
1634131D5Got23320056925718969257389Ratregion
1634628D5Got2411955100113215100113410Ratregion
2315222D16Nkg703195108885691108885972Ratregion
7192368Elavl2665105963428105963494Ratregion
5035763D9S201212659675922396759349Ratregion
5035889PMC289161P130458015854480158848Ratregion
5035971PMC337033P12255105962737105962962Ratregion
5035971PMC337033P12255105962737105963351Ratregion
5035971PMC337033P12255105962787105962962Ratregion
5036097UniSTS:1412181755102623667102623851Ratregion
5038928RH12741318957584393775844126Ratregion
5036221D4Bwg0951e12859540930895409436Ratregion
5036322UniSTS:14324115757323090873231065Ratregion
5039140RH1275351875103766729103766916Ratregion
5036619AU04861826756685612066856374Ratregion
5036755AU04910117458629004386290217Ratregion
5033877RH1404521655101169318101169483Ratregion
5033959RH14076813657431533574315471Ratregion
5033971RH14080821156819439268194603Ratregion
5026056RH13073620757484235074842557Ratregion
5026056RH13073620757514218475142391Ratregion
5026056RH13073620757539415175394358Ratregion
7205846EMBRA362143557412970974131137Ratregion
5031478AU0481911105100713273100713383Ratregion
5031500AU04811920059257105992571259Ratregion
5034133RH14148818957611807676118265Ratregion
5031640AU04764615559702564597025900Ratregion
5031640AU04764615559702574597025900Ratregion
5034231RH14186120757190851871908725Ratregion
5034239RH14189019457264489972645093Ratregion
5031720AU0473711035101621882101621985Ratregion
5034440BE11805415057873351378733663Ratregion
5031916AU04671620958742166287421871Ratregion
5026600RH13283116757378030373780470Ratregion
5026674RH13310418457594927375949457Ratregion
5032109RH94433975103020870103020967Ratregion
5032181RH12625720156849445868494659Ratregion
5034698AI70391721659024019690240412Ratregion
5026838RH13372421657582241875823125Ratregion
5029423UniSTS:23812654556828077368281315Ratregion
5029494D5Lev327759788098097881257Ratregion
5032261AV0779788159540931095409391Ratregion
5032361AI12049013159982813699828474Ratregion
5032361AI12049013159982834399828474Ratregion
5035106AFM324zg9059518271695183352Ratregion
5027030RH13446319157597484275975309Ratregion
5035338BM3864221555102106356102106511Ratregion
5035410AI0076031925101505317101505509Ratregion
5034854AI23373714557587950175879646Ratregion
5027269AW5508809357272024172720334Ratregion
5027271AI59701312057677752476777644Ratregion
5029923BE09784221959026354490263763Ratregion
5032773RH13524619257600875276008944Ratregion
5032773RH13524619257600875276008944Ratregion
5032797RH13533319756833910768339304Ratregion
5027589AU0676978457378008673780170Ratregion
5030205BF40179619259933570999335901Ratregion
5032879RH13682313857676574076765878Ratregion
5024988AU02201222259784702797847249Ratregion
5027679242D11L227357580318275803455Ratregion
5030281BE10522915059783946097839610Ratregion
5030351AW53341816059826876798268927Ratregion
502785513.MHAa96b1.seq11857723904077239158Ratregion
502786315.MMHAP53FRE9.seq2095101174343101174552Ratregion
5033307RH13835315759578234695782503Ratregion
5025322RH12787221358924285089243063Ratregion
5025424RH1282621915102623675102623875Ratregion
502793135.MMHAP28FLD5.seq1815109001682109001863Ratregion
5028029MHAa43g3.seq1055109077085109077190Ratregion
5030705BI30181715158221256982212720Ratregion
5025458RH12839620757447954174479750Ratregion
5025512RH12860719257700105777001249Ratregion
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5033713RH13984318256967164069671822Ratregion
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505217916.MHAa96b4.seq1545105677047105677201Ratregion
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5045342RH13112319657157103971571235Ratregion
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5044732RH13077220157391845473918649Ratregion
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5085222Tlr417858015806080158238Ratregion
5085369BQ20134119357272625972726452Ratregion
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5084018AI2324231105109497180109497290Ratregion
5503142PTPRD059006061290061733Ratregion
5503542PALM2__581972157244868372449552Ratregion
5503542PALM2__581972157244883172449552Ratregion
5503813CDW92_935072456819137468192098Ratregion
5503954Klf455257028191770283119Ratregion
5503680ELAVL2__75779485105962550105963498Ratregion
5503845Nmt12795103658564103658845Ratregion
5504010px-21e121355106315971106316106Ratregion
5504626PMC316663P32395104015134104015373Ratregion
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5504336D11S27838205107370493107371313Ratregion
5505134Ambp9857657284776573596Ratregion
5505352Atp6v1g114857696543276966960Ratregion
5505762UniSTS:492614130557144559671446901Ratregion
5506240Sctt01136857463264374633011Ratregion
5506873G4707122259981947399819695Ratregion
5507117UniSTS:22460315959895565698955815Ratregion
5501398Mpdz059587464695875800Ratregion
5499841UniSTS:23494015657901489779015053Ratregion
5500729D19S40990457379811873799022Ratregion
5503490ZNF618__471460257655853076559132Ratregion
5501179PMC152255P11485103991982103992130Ratregion
5501434Sod224156625852166258762Ratregion
5501470D9S187E7156973380869733879Ratregion
5504926Nfib5259696342296963474Ratregion
5505275Elavl24705105962786105963428Ratregion
5505275Elavl24705105962958105963428Ratregion
5501964MARC_21252-21253:1032892750:126457178090071781164Ratregion
5501940MARC_17865-17866:1025013775:148759676516596765652Ratregion
5502224G64294150359248199492483497Ratregion
5502311RH1243872305101369255101369485Ratregion
5502321RH12445215059432170494321854Ratregion
6904163D5Uwm7730057752186077522160Ratregion
6904165D5Uwm7826357754076277541025Ratregion
6904167D5Uwm7924757758593877586187Ratregion
6904169D5Uwm8028357763271877633001Ratregion
6904171D5Uwm8127457771465477714928Ratregion
6904173D5Uwm8227457774323977743513Ratregion
6904175D5Uwm8329057778640477786694Ratregion
6904177D5Uwm8427657779107677791352Ratregion
6904177D5Uwm8427657779107677791604Ratregion
6904177D5Uwm8427657779124077791352Ratregion
6904179D5Uwm8525457781615577816409Ratregion
6904181D5Uwm8629357781946577819841Ratregion
6904181D5Uwm8629357781954877819841Ratregion
6904183D5Uwm8721157796053577960746Ratregion
6904185D5Uwm8825657798860477988860Ratregion
6904187D5Uwm8922057799815177998371Ratregion
6904189D5Uwm9021957800587678006099Ratregion
6904191D5Uwm9121557801870678018921Ratregion
6904193D5Uwm9224257803884078039084Ratregion
6904195D5Uwm9317857810195878102136Ratregion
6904197D5Uwm9414657819183078191978Ratregion
6904199D5Uwm9526257855420578554465Ratregion
6904201D5Uwm9628757866221078662497Ratregion
6904203D5Uwm9727557961821779618492Ratregion
6904205D5Uwm9822158014535980145576Ratregion
Position Markers

Flank 2: (D5Uwm29)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25109,719,127 - 109,719,390 (+)MAPPER
Rnor_6.05113,838,123 - 113,838,385NCBI
Rnor_5.05117,784,669 - 117,784,931UniSTS
RGSC_v3.45115,181,496 - 115,181,758UniSTS
Celera5108,339,861 - 108,340,123UniSTS
Cytogenetic Map5q33UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)55979352890450144Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1598814Mcs13Mammary carcinoma susceptibility QTL 130.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)56319089069927503Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1598845Mcs14Mammary carcinoma susceptibility QTL 140.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)57636977680813390Rat
6907110Mcs28Mammary carcinoma susceptibility QTL 28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)57774323978039084Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)57781615577988860Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)58384059897059958Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
1582212Livw2Liver weight QTL 23.50.0004liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)599016066119085810Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1600362Mcs19Mammary carcinoma susceptibility QTL 192.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)599485997103690167Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)599753548113061097Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general animals used: 50-55 days old females 1601189
qtl_general software used: Mann-Whitney nonparametric test used for analysing mammary cancer multiplicity data 1601189
qtl_general inducing agent: DMBA (65 mg/kg of body wt) 1601189
qtl_general resistance is observed only when Mcs23 and Mcs24 WKY alleles are in cis orientation, when in trans they develop similar number of carcinomas; heterozygous animals have fewer carcinomas 1601189