Cxcr5 (C-X-C motif chemokine receptor 5) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Cxcr5 (C-X-C motif chemokine receptor 5) Rattus norvegicus
Analyze
Symbol: Cxcr5
Name: C-X-C motif chemokine receptor 5
RGD ID: 62010
Description: Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; positive regulation of cytokinesis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within leukocyte chemotaxis and lymph node development. Predicted to be active in external side of plasma membrane. Orthologous to human CXCR5 (C-X-C motif chemokine receptor 5); PARTICIPATES IN chemokine mediated signaling pathway; cytokine mediated signaling pathway; INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; 3H-1,2-dithiole-3-thione; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Blr1; Burkitt lymphoma receptor 1; burkitt lymphoma receptor 1 homolog; C-X-C chemokine receptor type 5; chemochine (C-X-C motif) receptor 5; chemokine (C-X-C motif) receptor 5; CXC-R5; CXCR-5; neurolymphatic receptor; NLR
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,738,878 - 53,756,813 (-)NCBIGRCr8
mRatBN7.2844,842,098 - 44,858,425 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,843,413 - 44,857,893 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,338,308 - 50,351,688 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,617,025 - 48,630,405 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,487,367 - 46,500,722 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,835,688 - 48,852,032 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,836,957 - 48,850,671 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,454,074 - 47,470,348 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,485,125 - 47,498,509 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,493,890 - 47,494,999 (-)NCBI
Celera844,428,390 - 44,441,750 (-)NCBICelera
Cytogenetic Map8q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Cloning of a novel putative G-protein-coupled receptor (NLR) which is expressed in neuronal and lymphatic tissue. Kouba M, etal., FEBS Lett 1993 Apr 26;321(2-3):173-8.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12732660   PMID:22888021   PMID:23583643   PMID:25348153   PMID:37622691   PMID:38526919  


Genomics

Comparative Map Data
Cxcr5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,738,878 - 53,756,813 (-)NCBIGRCr8
mRatBN7.2844,842,098 - 44,858,425 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,843,413 - 44,857,893 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,338,308 - 50,351,688 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,617,025 - 48,630,405 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,487,367 - 46,500,722 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,835,688 - 48,852,032 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,836,957 - 48,850,671 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,454,074 - 47,470,348 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,485,125 - 47,498,509 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,493,890 - 47,494,999 (-)NCBI
Celera844,428,390 - 44,441,750 (-)NCBICelera
Cytogenetic Map8q22NCBI
CXCR5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,883,892 - 118,897,787 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11118,883,892 - 118,897,787 (+)EnsemblGRCh38hg38GRCh38
GRCh3711118,754,601 - 118,768,496 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,259,777 - 118,272,181 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411118,269,310 - 118,272,180NCBI
Celera11115,914,233 - 115,926,662 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,694,357 - 114,706,861 (+)NCBIHuRef
CHM1_111118,640,782 - 118,653,288 (+)NCBICHM1_1
T2T-CHM13v2.011118,902,950 - 118,918,023 (+)NCBIT2T-CHM13v2.0
Cxcr5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,423,084 - 44,437,741 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,423,084 - 44,473,174 (-)EnsemblGRCm39 Ensembl
GRCm38944,511,787 - 44,526,444 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,511,787 - 44,561,877 (-)EnsemblGRCm38mm10GRCm38
MGSCv37944,319,870 - 44,334,504 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,262,782 - 44,277,416 (-)NCBIMGSCv36mm8
Celera941,765,140 - 41,779,807 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Cxcr5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,016,587 - 20,031,629 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,016,768 - 20,031,635 (+)NCBIChiLan1.0ChiLan1.0
CXCR5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,588,864 - 119,602,528 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,691,762 - 120,706,394 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,722,084 - 113,735,987 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,652,368 - 117,664,852 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,652,368 - 117,664,852 (+)Ensemblpanpan1.1panPan2
CXCR5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,921,447 - 14,932,937 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl514,923,089 - 14,932,762 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,974,356 - 14,985,789 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0514,864,685 - 14,876,132 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl514,864,690 - 14,876,155 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,003,411 - 15,014,858 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0514,907,174 - 14,918,621 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0514,946,968 - 14,958,415 (-)NCBIUU_Cfam_GSD_1.0
Cxcr5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,939,127 - 100,952,204 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365423,860,536 - 3,872,116 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365423,860,536 - 3,872,528 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CXCR5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,143,117 - 46,146,636 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,134,243 - 46,146,638 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,169,120 - 51,183,302 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CXCR5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,253,792 - 110,267,251 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,254,723 - 110,265,597 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,769,647 - 15,781,162 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cxcr5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478414,286,355 - 14,297,383 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478414,285,998 - 14,298,679 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:44
Count of miRNA genes:41
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000016580
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
5684993Bmd84Bone mineral density QTL 844.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)85158969958991895Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83776085958991895Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83776085961459705Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84961020468373388Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)83412590255607752Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)85076395167219641Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat

Markers in Region
G45300  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2844,849,435 - 44,849,615 (+)MAPPERmRatBN7.2
Rnor_6.0848,843,137 - 48,843,316NCBIRnor6.0
Rnor_5.0847,461,523 - 47,461,702UniSTSRnor5.0
RGSC_v3.4847,491,148 - 47,491,327UniSTSRGSC3.4
Celera844,434,413 - 44,434,580UniSTS
Cytogenetic Map8q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 106 91 90 59 25 59 6 218 97 86 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000016580   ⟹   ENSRNOP00000016580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl844,843,413 - 44,857,893 (-)Ensembl
Rnor_6.0 Ensembl848,836,957 - 48,850,671 (-)Ensembl
RefSeq Acc Id: NM_053303   ⟹   NP_445755
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,740,197 - 53,753,581 (-)NCBI
mRatBN7.2844,843,413 - 44,856,799 (-)NCBI
Rnor_6.0848,837,114 - 48,850,498 (-)NCBI
Rnor_5.0847,454,074 - 47,470,348 (-)NCBI
RGSC_v3.4847,485,125 - 47,498,509 (-)RGD
Celera844,428,390 - 44,441,750 (-)RGD
Sequence:
RefSeq Acc Id: XM_006242901   ⟹   XP_006242963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,738,878 - 53,756,813 (-)NCBI
mRatBN7.2844,842,098 - 44,858,425 (-)NCBI
Rnor_6.0848,835,688 - 48,852,032 (-)NCBI
Rnor_5.0847,454,074 - 47,470,348 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080948   ⟹   XP_038936876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,738,878 - 53,743,799 (-)NCBI
mRatBN7.2844,842,098 - 44,846,592 (-)NCBI
RefSeq Acc Id: XM_039080949   ⟹   XP_038936877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,738,878 - 53,742,230 (-)NCBI
mRatBN7.2844,842,098 - 44,845,438 (-)NCBI
Protein Sequences
Protein RefSeqs NP_445755 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242963 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936876 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936877 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA50582 (Get FASTA)   NCBI Sequence Viewer  
  EDL95327 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016580.1
GenBank Protein P34997 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_445755   ⟸   NM_053303
- UniProtKB: P34997 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006242963   ⟸   XM_006242901
- Peptide Label: isoform X1
- UniProtKB: G3V7M1 (UniProtKB/TrEMBL),   A6J404 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016580   ⟸   ENSRNOT00000016580
RefSeq Acc Id: XP_038936876   ⟸   XM_039080948
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038936877   ⟸   XM_039080949
- Peptide Label: isoform X2
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P34997-F1-model_v2 AlphaFold P34997 1-374 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62010 AgrOrtholog
BioCyc Gene G2FUF-30712 BioCyc
Ensembl Genes ENSRNOG00000012430 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016580.4 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Chemokine_CXCR5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29363 UniProtKB/Swiss-Prot
NCBI Gene 29363 ENTREZGENE
PANTHER C-X-C CHEMOKINE RECEPTOR TYPE 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CELL ADHESION MOLECULE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cxcr5 PhenoGen
PRINTS CXCCHMKINER5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012430 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6J404 ENTREZGENE, UniProtKB/TrEMBL
  CXCR5_RAT UniProtKB/Swiss-Prot
  G3V7M1 ENTREZGENE, UniProtKB/TrEMBL
  P34997 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-22 Cxcr5  C-X-C motif chemokine receptor 5  Cxcr5  chemokine (C-X-C motif) receptor 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-26 Cxcr5  chemokine (C-X-C motif) receptor 5  Cxcr5  chemochine (C-X-C motif) receptor 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Cxcr5  chemochine (C-X-C motif) receptor 5  Blr1  Burkitt lymphoma receptor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Blr1  Burkitt lymphoma receptor 1      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in the brain and spleen 61543