Lst1 (leukocyte specific transcript 1) - Rat Genome Database

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Gene: Lst1 (leukocyte specific transcript 1) Rattus norvegicus
Analyze
Symbol: Lst1
Name: leukocyte specific transcript 1
RGD ID: 620077
Description: Predicted to be involved in dendrite development and negative regulation of lymphocyte proliferation. Predicted to be located in cytoplasm. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in graft-versus-host disease. Orthologous to human LST1 (leukocyte specific transcript 1); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B144; leucocyte specific transcript 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,639,353 - 3,644,399 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl203,639,341 - 3,642,669 (+)EnsemblGRCr8
mRatBN7.2203,634,680 - 3,639,731 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,634,749 - 3,637,997 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx204,334,461 - 4,337,695 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,696,519 - 3,699,751 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,234,124 - 4,237,360 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,175,213 - 5,179,352 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,176,016 - 5,179,263 (-)Ensemblrn6Rnor6.0
Rnor_5.0207,248,563 - 7,252,609 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4203,698,568 - 3,701,564 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera204,387,819 - 4,391,014 (-)NCBICelera
RGSC_v3.1203,698,794 - 3,701,713 (+)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(E)-thiamethoxam  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzalkonium chloride  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
bromobenzene  (EXP)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chrysene  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP)
D-glucose  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ferric oxide  (ISO)
flutamide  (EXP)
fructose  (ISO)
fulvestrant  (ISO)
glucose  (ISO)
glyphosate  (ISO)
lidocaine  (EXP)
mercury dichloride  (ISO)
methylmercury chloride  (EXP)
nickel atom  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
pirinixic acid  (ISO)
propanal  (ISO)
resveratrol  (EXP)
SB 431542  (ISO)
sodium dichromate  (ISO)
streptozocin  (EXP)
sulforaphane  (ISO)
tamibarotene  (ISO)
testosterone  (EXP,ISO)
tetraphene  (ISO)
tetrathiomolybdate(2-)  (ISO)
theophylline  (ISO)
thiamethoxam  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
membrane  (IEA,ISO)
plasma membrane  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The genomic sequence and comparative analysis of the rat major histocompatibility complex. Hurt P, etal., Genome Res 2004 Apr;14(4):631-9.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Cytokine gene polymorphisms associating with severe acute graft-versus-host disease in HLA-identical sibling transplants. Middleton PG, etal., Blood. 1998 Nov 15;92(10):3943-8.
5. LST1 and NCR3 expression in autoimmune inflammation and in response to IFN-gamma, LPS and microbial infection. Mulcahy H, etal., Immunogenetics. 2006 Jan;57(12):893-903. Epub 2005 Dec 17.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. A new member of the Ig superfamily and a V-ATPase G subunit are among the predicted products of novel genes close to the TNF locus in the human MHC. Neville MJ and Campbell RD, J Immunol 1999 Apr 15;162(8):4745-54.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:10706707   PMID:11478849  


Genomics

Comparative Map Data
Lst1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,639,353 - 3,644,399 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl203,639,341 - 3,642,669 (+)EnsemblGRCr8
mRatBN7.2203,634,680 - 3,639,731 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,634,749 - 3,637,997 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx204,334,461 - 4,337,695 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,696,519 - 3,699,751 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,234,124 - 4,237,360 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,175,213 - 5,179,352 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,176,016 - 5,179,263 (-)Ensemblrn6Rnor6.0
Rnor_5.0207,248,563 - 7,252,609 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4203,698,568 - 3,701,564 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera204,387,819 - 4,391,014 (-)NCBICelera
RGSC_v3.1203,698,794 - 3,701,713 (+)NCBI
Cytogenetic Map20p12NCBI
LST1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,586,277 - 31,588,909 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,586,124 - 31,588,910 (+)Ensemblhg38GRCh38
GRCh37631,554,054 - 31,556,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,661,950 - 31,664,665 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34631,661,949 - 31,664,664NCBI
Celera633,152,171 - 33,154,901 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,340,690 - 31,343,417 (+)NCBIHuRef
CHM1_1631,556,091 - 31,558,821 (+)NCBICHM1_1
T2T-CHM13v2.0631,439,327 - 31,441,957 (+)NCBIT2T-CHM13v2.0
Lst1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,404,071 - 35,407,416 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,404,071 - 35,407,415 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381735,185,095 - 35,188,440 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,185,095 - 35,188,439 (-)Ensemblmm10GRCm38
MGSCv371735,322,040 - 35,325,385 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361734,793,147 - 34,796,492 (-)NCBIMGSCv36mm8
Celera1738,282,028 - 38,285,369 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
Lst1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955437127,430 - 129,835 (+)NCBIChiLan1.0ChiLan1.0
LST1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,058,087 - 46,065,828 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,019,663 - 42,027,402 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,242,230 - 31,249,961 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,137,214 - 32,139,995 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,137,214 - 32,139,995 (+)EnsemblpanPan2panpan1.1
LST1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,084,739 - 1,086,182 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,221,123 - 1,222,617 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0121,229,927 - 1,231,422 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,230,026 - 1,231,352 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,088,656 - 1,090,142 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,156,602 - 1,158,089 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,223,402 - 1,224,931 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lst1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,634,852 - 35,636,745 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,924,681 - 1,925,977 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,924,599 - 1,928,169 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LST1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1723,705,491 - 23,712,987 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,539,011 - 27,546,275 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LST1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604431,488,975 - 31,491,841 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lst1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,613,554 - 24,615,594 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Lst1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1187,782,302 - 7,786,360 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lst1
144 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:57
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000065940
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 8 62 144 91 90 59 92 59 6 347 186 11 119 81 89 31 9 9

Sequence


Ensembl Acc Id: ENSRNOT00000065940   ⟹   ENSRNOP00000060414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,634,801 - 3,637,997 (+)Ensembl
Rnor_6.0 Ensembl205,176,016 - 5,179,217 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092443   ⟹   ENSRNOP00000075782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,634,801 - 3,637,919 (+)Ensembl
Rnor_6.0 Ensembl205,176,016 - 5,179,263 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119251   ⟹   ENSRNOP00000085666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,634,749 - 3,637,919 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120406   ⟹   ENSRNOP00000098088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl203,639,422 - 3,642,668 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120407   ⟹   ENSRNOP00000098089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl203,639,341 - 3,642,669 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000165937   ⟹   ENSRNOP00000101794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl203,639,341 - 3,642,591 (+)Ensembl
RefSeq Acc Id: NM_022634   ⟹   NP_072156
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,639,474 - 3,642,669 (+)NCBI
mRatBN7.2203,634,801 - 3,637,997 (+)NCBI
Rnor_6.0205,176,016 - 5,179,211 (-)NCBI
Rnor_5.0207,248,563 - 7,252,609 (-)NCBI
RGSC_v3.4203,698,568 - 3,701,564 (+)RGD
Celera204,387,819 - 4,391,014 (-)RGD
Sequence:
RefSeq Acc Id: XM_006256078   ⟹   XP_006256140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,639,355 - 3,644,399 (+)NCBI
mRatBN7.2203,634,684 - 3,639,731 (+)NCBI
Rnor_6.0205,175,213 - 5,179,352 (-)NCBI
Rnor_5.0207,248,563 - 7,252,609 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256080   ⟹   XP_006256142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,639,353 - 3,642,669 (+)NCBI
mRatBN7.2203,634,680 - 3,637,997 (+)NCBI
Rnor_6.0205,176,016 - 5,179,351 (-)NCBI
Rnor_5.0207,248,563 - 7,252,609 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063279496   ⟹   XP_063135566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,639,353 - 3,644,399 (+)NCBI
RefSeq Acc Id: NP_072156   ⟸   NM_022634
- UniProtKB: Q6MG46 (UniProtKB/TrEMBL),   E9PST7 (UniProtKB/TrEMBL),   A0A9K3Y6U3 (UniProtKB/TrEMBL),   Q9QXI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256140   ⟸   XM_006256078
- Peptide Label: isoform X1
- UniProtKB: Q6MG46 (UniProtKB/TrEMBL),   E9PST7 (UniProtKB/TrEMBL),   A0A9K3Y6U3 (UniProtKB/TrEMBL),   Q9QXI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256142   ⟸   XM_006256080
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A4K1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075782   ⟸   ENSRNOT00000092443
Ensembl Acc Id: ENSRNOP00000060414   ⟸   ENSRNOT00000065940
Ensembl Acc Id: ENSRNOP00000085666   ⟸   ENSRNOT00000119251
RefSeq Acc Id: XP_063135566   ⟸   XM_063279496
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A4K1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101794   ⟸   ENSRNOT00000165937
Ensembl Acc Id: ENSRNOP00000098089   ⟸   ENSRNOT00000120407
Ensembl Acc Id: ENSRNOP00000098088   ⟸   ENSRNOT00000120406

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MG46-F1-model_v2 AlphaFold Q6MG46 1-119 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701403
Promoter ID:EPDNEW_R11925
Type:multiple initiation site
Name:Lst1_1
Description:leukocyte specific transcript 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,179,258 - 5,179,318EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620077 AgrOrtholog
BioCyc Gene G2FUF-4658 BioCyc
Ensembl Genes ENSRNOG00000000855 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000120406 ENTREZGENE
  ENSRNOT00000120406.2 UniProtKB/TrEMBL
  ENSRNOT00000120407 ENTREZGENE
  ENSRNOT00000120407.2 UniProtKB/TrEMBL
  ENSRNOT00000165937.1 UniProtKB/TrEMBL
InterPro Leukocyte-sp_tscrpt_1_LST1 UniProtKB/TrEMBL
KEGG Report rno:64569 UniProtKB/TrEMBL
NCBI Gene 64569 ENTREZGENE
PANTHER LEUKOCYTE-SPECIFIC TRANSCRIPT 1 PROTEIN UniProtKB/TrEMBL
  PTHR15452 UniProtKB/TrEMBL
Pfam LST1 UniProtKB/TrEMBL
PharmGKB LST1 RGD
PhenoGen Lst1 PhenoGen
RatGTEx ENSRNOG00000000855 RatGTEx
UniProt A0A8I6A4K1 ENTREZGENE
  A0A9K3Y6U3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0KW42_RAT UniProtKB/TrEMBL
  A0ABK0L0V5_RAT UniProtKB/TrEMBL
  A0ABK0LCA1_RAT UniProtKB/TrEMBL
  E9PST7 ENTREZGENE
  Q6MG46 ENTREZGENE
  Q9QXI4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-22 Lst1  leukocyte specific transcript 1  Lst1  leucocyte specific transcript 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Lst1  leucocyte specific transcript 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Lst1  leucocyte specific transcript 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_mapping found within the rat major histocompatibility RT1 complex 1300431