Calcoco1 (calcium binding and coiled coil domain 1) - Rat Genome Database

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Gene: Calcoco1 (calcium binding and coiled coil domain 1) Rattus norvegicus
Analyze
Symbol: Calcoco1
Name: calcium binding and coiled coil domain 1
RGD ID: 619812
Description: Predicted to enable several functions, including RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; beta-catenin binding activity; and transcription coactivator activity. Predicted to be involved in nuclear receptor-mediated steroid hormone signaling pathway; positive regulation of gene expression; and positive regulation of transcription by RNA polymerase II. Predicted to be located in chromatin. Orthologous to human CALCOCO1 (calcium binding and coiled-coil domain 1); PARTICIPATES IN estrogen signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: calcium-binding and coiled-coil domain-containing protein 1; calcium-binding and coiled-coil domain-containing protein 1-like; KIAA1536; LOC100912282; MGC93160
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87135,713,208 - 135,728,044 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7135,713,208 - 135,727,928 (-)EnsemblGRCr8
mRatBN7.27133,834,705 - 133,849,515 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,834,707 - 133,849,422 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7135,590,837 - 135,605,542 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07137,820,202 - 137,834,906 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07137,806,151 - 137,820,878 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07144,307,562 - 144,322,253 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7145,435,584 - 145,450,301 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl7144,307,509 - 144,322,240 (-)Ensemblrn6Rnor6.0
Rnor_5.07142,099,780 - 142,114,471 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47141,456,249 - 141,470,966 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7130,261,950 - 130,276,675 (-)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
camptothecin  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
casticin  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
cisplatin  (ISO)
clozapine  (ISO)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
DDE  (ISO)
deguelin  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dioxygen  (ISO)
elemental selenium  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
folpet  (ISO)
gentamycin  (EXP)
leflunomide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
Nutlin-3  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP)
phenethyl isothiocyanate  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA,ISO)
cytoplasm  (IEA)
cytosol  (IEA,ISO)
nucleus  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Coregulators in nuclear estrogen receptor action: from concept to therapeutic targeting. Hall JM and McDonnell DP, Mol Interv. 2005 Dec;5(6):343-57.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8. Cellular signaling mediated by calphoglin-induced activation of IPP and PGM. Takahashi K, etal., Biochem Biophys Res Commun 2004 Dec 3;325(1):203-14.
Additional References at PubMed
PMID:14690606   PMID:15383530   PMID:16344550   PMID:24245781   PMID:29476059  


Genomics

Comparative Map Data
Calcoco1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87135,713,208 - 135,728,044 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7135,713,208 - 135,727,928 (-)EnsemblGRCr8
mRatBN7.27133,834,705 - 133,849,515 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,834,707 - 133,849,422 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7135,590,837 - 135,605,542 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07137,820,202 - 137,834,906 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07137,806,151 - 137,820,878 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07144,307,562 - 144,322,253 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7145,435,584 - 145,450,301 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl7144,307,509 - 144,322,240 (-)Ensemblrn6Rnor6.0
Rnor_5.07142,099,780 - 142,114,471 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47141,456,249 - 141,470,966 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7130,261,950 - 130,276,675 (-)NCBICelera
Cytogenetic Map7q36NCBI
CALCOCO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381253,708,517 - 53,727,452 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1253,708,517 - 53,727,745 (-)Ensemblhg38GRCh38
GRCh371254,102,301 - 54,121,236 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361252,391,169 - 52,407,486 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341252,391,169 - 52,407,486NCBI
Celera1253,754,817 - 53,771,222 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1251,142,897 - 51,159,310 (-)NCBIHuRef
CHM1_11254,071,838 - 54,088,243 (-)NCBICHM1_1
T2T-CHM13v2.01253,674,269 - 53,693,205 (-)NCBIT2T-CHM13v2.0
Calcoco1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,615,212 - 102,630,616 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15102,615,212 - 102,630,613 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3815102,706,777 - 102,722,178 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,706,777 - 102,722,178 (-)Ensemblmm10GRCm38
MGSCv3715102,537,208 - 102,552,609 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3615102,534,813 - 102,550,103 (-)NCBIMGSCv36mm8
Celera15104,864,506 - 104,879,996 (-)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1557.81NCBI
Calcoco1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458994,453 - 1,009,543 (-)Ensembl
ChiLan1.0NW_004955458994,511 - 1,009,430 (-)NCBIChiLan1.0ChiLan1.0
CALCOCO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21040,458,280 - 40,475,025 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11240,455,044 - 40,471,789 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01235,027,491 - 35,044,039 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11235,814,629 - 35,831,191 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1235,814,629 - 35,831,191 (+)EnsemblpanPan2panpan1.1
CALCOCO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,525,569 - 1,542,256 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,525,687 - 1,542,269 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2744,707,917 - 44,724,581 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0271,529,078 - 1,545,764 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl271,529,155 - 1,545,777 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,546,299 - 1,562,957 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,528,377 - 1,545,051 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02745,111,244 - 45,127,916 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Calcoco1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494562,200,417 - 62,217,004 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651210,947,681 - 10,964,431 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493651210,947,826 - 10,964,372 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALCOCO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,910,700 - 18,930,321 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1518,910,698 - 18,930,402 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2519,356,276 - 19,375,989 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CALCOCO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11149,816,546 - 49,833,655 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1149,814,007 - 49,833,632 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037196,211,874 - 196,229,228 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Calcoco1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249041,790,587 - 1,809,277 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249041,792,861 - 1,809,265 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Calcoco1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11260,366,021 - 260,381,132 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:527
Count of miRNA genes:237
Interacting mature miRNAs:280
Transcripts:ENSRNOT00000021523
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)7132099939137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7135371291137014596Rat

Markers in Region
BF387379  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27133,835,696 - 133,835,863 (+)MAPPERmRatBN7.2
Rnor_6.07144,308,554 - 144,308,720NCBIRnor6.0
Rnor_6.07145,436,576 - 145,436,742NCBIRnor6.0
Rnor_5.07143,219,493 - 143,219,659UniSTSRnor5.0
Rnor_5.07142,100,772 - 142,100,938UniSTSRnor5.0
RGSC_v3.47141,457,241 - 141,457,407UniSTSRGSC3.4
Celera7130,262,942 - 130,263,108UniSTS
RH 3.4 Map71053.5UniSTS
Cytogenetic Map7q36UniSTS
AI010402  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27133,834,759 - 133,835,016 (+)MAPPERmRatBN7.2
Rnor_6.07144,307,617 - 144,307,873NCBIRnor6.0
Rnor_6.07145,435,639 - 145,435,895NCBIRnor6.0
Rnor_5.07143,218,556 - 143,218,812UniSTSRnor5.0
Rnor_5.07142,099,835 - 142,100,091UniSTSRnor5.0
RGSC_v3.47141,456,304 - 141,456,560UniSTSRGSC3.4
Celera7130,262,005 - 130,262,261UniSTS
RH 3.4 Map71062.9UniSTS
Cytogenetic Map7q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
21 6 35 136 81 80 38 94 38 12 298 170 11 107 67 86 42 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021523   ⟹   ENSRNOP00000021522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7135,713,208 - 135,727,928 (-)Ensembl
mRatBN7.2 Ensembl7133,834,707 - 133,849,422 (-)Ensembl
Rnor_6.0 Ensembl7145,435,584 - 145,450,301 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000070855   ⟹   ENSRNOP00000064554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7135,713,208 - 135,727,928 (-)Ensembl
mRatBN7.2 Ensembl7133,834,707 - 133,849,422 (-)Ensembl
Rnor_6.0 Ensembl7144,308,345 - 144,319,804 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089290   ⟹   ENSRNOP00000071559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7135,713,991 - 135,727,928 (-)Ensembl
mRatBN7.2 Ensembl7133,834,716 - 133,849,390 (-)Ensembl
Rnor_6.0 Ensembl7144,307,509 - 144,322,240 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092974   ⟹   ENSRNOP00000075971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7145,447,362 - 145,450,233 (-)Ensembl
RefSeq Acc Id: NM_139190   ⟹   NP_631929
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,713,208 - 135,727,928 (-)NCBI
mRatBN7.27133,834,705 - 133,849,422 (-)NCBI
Rnor_6.07144,307,562 - 144,322,253 (-)NCBI
Rnor_5.07142,099,780 - 142,114,471 (-)NCBI
RGSC_v3.47141,456,249 - 141,470,966 (-)RGD
Celera7130,261,950 - 130,276,675 (-)RGD
Sequence:
RefSeq Acc Id: XM_039078406   ⟹   XP_038934334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,713,208 - 135,728,022 (-)NCBI
mRatBN7.27133,834,705 - 133,849,515 (-)NCBI
RefSeq Acc Id: XM_039078407   ⟹   XP_038934335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,713,208 - 135,727,871 (-)NCBI
mRatBN7.27133,834,705 - 133,849,349 (-)NCBI
RefSeq Acc Id: XM_063262990   ⟹   XP_063119060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,713,208 - 135,727,911 (-)NCBI
RefSeq Acc Id: XM_063262991   ⟹   XP_063119061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,713,208 - 135,728,044 (-)NCBI
RefSeq Acc Id: XM_063262992   ⟹   XP_063119062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87135,713,208 - 135,727,871 (-)NCBI
RefSeq Acc Id: NP_631929   ⟸   NM_139190
- UniProtKB: Q66HR5 (UniProtKB/Swiss-Prot),   Q8R443 (UniProtKB/Swiss-Prot),   A6KCX8 (UniProtKB/TrEMBL),   A0A8L2QVZ6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000064554   ⟸   ENSRNOT00000070855
Ensembl Acc Id: ENSRNOP00000071559   ⟸   ENSRNOT00000089290
RefSeq Acc Id: XP_038934334   ⟸   XM_039078406
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K0S1 (UniProtKB/TrEMBL),   A0A8L2QVZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934335   ⟸   XM_039078407
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K0S1 (UniProtKB/TrEMBL),   A0A8L2QVZ6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000075971   ⟸   ENSRNOT00000092974
Ensembl Acc Id: ENSRNOP00000021522   ⟸   ENSRNOT00000021523
RefSeq Acc Id: XP_063119061   ⟸   XM_063262991
- Peptide Label: isoform X2
- UniProtKB: Q8R443 (UniProtKB/Swiss-Prot),   Q66HR5 (UniProtKB/Swiss-Prot),   A6KCX8 (UniProtKB/TrEMBL),   A0A8L2QVZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119060   ⟸   XM_063262990
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K0S1 (UniProtKB/TrEMBL),   A0A8L2QVZ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119062   ⟸   XM_063262992
- Peptide Label: isoform X2
- UniProtKB: Q8R443 (UniProtKB/Swiss-Prot),   Q66HR5 (UniProtKB/Swiss-Prot),   A6KCX8 (UniProtKB/TrEMBL),   A0A8L2QVZ6 (UniProtKB/TrEMBL)
Protein Domains
UBZ1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66HR5-F1-model_v2 AlphaFold Q66HR5 1-691 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695709
Promoter ID:EPDNEW_R6232
Type:initiation region
Name:Calcoco1_1
Description:calcium binding and coiled coil domain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07144,322,242 - 144,322,302EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619812 AgrOrtholog
BioCyc Gene G2FUF-31926 BioCyc
Ensembl Genes ENSRNOG00000015447 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000048982 Ensembl
Ensembl Transcript ENSRNOT00000021523 ENTREZGENE
  ENSRNOT00000021523.7 UniProtKB/Swiss-Prot
  ENSRNOT00000089290 ENTREZGENE
Gene3D-CATH 2.60.40.2840 UniProtKB/Swiss-Prot
  6.20.250.40 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7124320 IMAGE-MGC_LOAD
InterPro CALCOCO1-like UniProtKB/Swiss-Prot
  CALCOCO1/2_Zn-C2H2 UniProtKB/Swiss-Prot
  SKICH UniProtKB/Swiss-Prot
  UBA_autophagy_assoc_protein UniProtKB/Swiss-Prot
KEGG Report rno:246047 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93160 IMAGE-MGC_LOAD
NCBI Gene 246047 ENTREZGENE
PANTHER CALCIUM-BINDING AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
  SKICH DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
Pfam CALCOCO1 UniProtKB/Swiss-Prot
  SKICH UniProtKB/Swiss-Prot
  Zn-C2H2_12 UniProtKB/Swiss-Prot
PhenoGen Calcoco1 PhenoGen
PROSITE ZF_UBZ1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000015447 RatGTEx
  ENSRNOG00000048982 RatGTEx
Superfamily-SCOP Tropomyosin UniProtKB/Swiss-Prot
UniProt A0A0G2K0S1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QVZ6 ENTREZGENE, UniProtKB/TrEMBL
  A6KCX8 ENTREZGENE, UniProtKB/TrEMBL
  CACO1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q8R443 ENTREZGENE
UniProt Secondary Q8R443 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Calcoco1  calcium binding and coiled coil domain 1  LOC100912282  calcium-binding and coiled-coil domain-containing protein 1-like  Data merged from RGD:6488185 737654 PROVISIONAL
2012-07-05 LOC100912282  calcium-binding and coiled-coil domain-containing protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Calcoco1  calcium binding and coiled coil domain 1  KIAA1536  KIAA1536 protein  Symbol and Name updated 1299863 APPROVED
2002-08-07 KIAA1536  KIAA1536 protein      Symbol and Name status set to provisional 70820 PROVISIONAL