CALCOCO1 (calcium binding and coiled-coil domain 1) - Rat Genome Database

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Gene: CALCOCO1 (calcium binding and coiled-coil domain 1) Homo sapiens
Analyze
Symbol: CALCOCO1
Name: calcium binding and coiled-coil domain 1
RGD ID: 731717
HGNC Page HGNC:29306
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; beta-catenin binding activity; and nuclear receptor coactivator activity. Involved in positive regulation of DNA-templated transcription and positive regulation of gene expression. Located in cytosol and nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calcium-binding and coiled-coil domain-containing protein 1; calphoglin; Cocoa; coiled-coil coactivator protein; coiled-coil leucine zipper coactivator 1; inorganic pyrophosphatase activator; KIAA1536; PP13275; sarcoma antigen NY-SAR-3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381253,708,517 - 53,727,452 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1253,708,517 - 53,727,745 (-)EnsemblGRCh38hg38GRCh38
GRCh371254,102,301 - 54,121,236 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361252,391,169 - 52,407,486 (-)NCBINCBI36Build 36hg18NCBI36
Build 341252,391,169 - 52,407,486NCBI
Celera1253,754,817 - 53,771,222 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1251,142,897 - 51,159,310 (-)NCBIHuRef
CHM1_11254,071,838 - 54,088,243 (-)NCBICHM1_1
T2T-CHM13v2.01253,674,269 - 53,693,205 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Coregulators in nuclear estrogen receptor action: from concept to therapeutic targeting. Hall JM and McDonnell DP, Mol Interv. 2005 Dec;5(6):343-57.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8125298   PMID:10819331   PMID:11076863   PMID:11230166   PMID:11256614   PMID:12477932   PMID:12601173   PMID:12975309   PMID:14702039   PMID:15489336   PMID:15522220   PMID:15851553  
PMID:16169070   PMID:16189514   PMID:16344550   PMID:16344560   PMID:16381901   PMID:16713569   PMID:16717280   PMID:16931570   PMID:18029348   PMID:18854154   PMID:19165232   PMID:19183483  
PMID:19324882   PMID:19953087   PMID:20211142   PMID:20360068   PMID:20804422   PMID:21512126   PMID:21653829   PMID:21832049   PMID:21873635   PMID:21988832   PMID:24245781   PMID:25343990  
PMID:25416956   PMID:26167880   PMID:26186194   PMID:27107014   PMID:28514442   PMID:28611215   PMID:29187741   PMID:31953347   PMID:31971854   PMID:32129710   PMID:32296183   PMID:32525583  
PMID:32665550   PMID:32707033   PMID:32989298   PMID:33545068   PMID:33961781   PMID:34079125   PMID:34917906   PMID:35271311   PMID:36215168  


Genomics

Comparative Map Data
CALCOCO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381253,708,517 - 53,727,452 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1253,708,517 - 53,727,745 (-)EnsemblGRCh38hg38GRCh38
GRCh371254,102,301 - 54,121,236 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361252,391,169 - 52,407,486 (-)NCBINCBI36Build 36hg18NCBI36
Build 341252,391,169 - 52,407,486NCBI
Celera1253,754,817 - 53,771,222 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1251,142,897 - 51,159,310 (-)NCBIHuRef
CHM1_11254,071,838 - 54,088,243 (-)NCBICHM1_1
T2T-CHM13v2.01253,674,269 - 53,693,205 (-)NCBIT2T-CHM13v2.0
Calcoco1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,615,212 - 102,630,616 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15102,615,212 - 102,630,613 (-)EnsemblGRCm39 Ensembl
GRCm3815102,706,777 - 102,722,178 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,706,777 - 102,722,178 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715102,537,208 - 102,552,609 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615102,534,813 - 102,550,103 (-)NCBIMGSCv36mm8
Celera15104,864,506 - 104,879,996 (-)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1557.81NCBI
Calcoco1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87135,713,208 - 135,728,044 (-)NCBIGRCr8
mRatBN7.27133,834,705 - 133,849,515 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7133,834,707 - 133,849,422 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7135,590,837 - 135,605,542 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07137,820,202 - 137,834,906 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07137,806,151 - 137,820,878 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07144,307,562 - 144,322,253 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,307,509 - 144,322,240 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl7145,435,584 - 145,450,301 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07142,099,780 - 142,114,471 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47141,456,249 - 141,470,966 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7130,261,950 - 130,276,675 (-)NCBICelera
Cytogenetic Map7q36NCBI
Calcoco1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458994,453 - 1,009,543 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955458994,511 - 1,009,430 (-)NCBIChiLan1.0ChiLan1.0
CALCOCO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21040,458,280 - 40,475,025 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11240,455,044 - 40,471,789 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01235,027,491 - 35,044,039 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11235,814,629 - 35,831,191 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1235,814,629 - 35,831,191 (+)Ensemblpanpan1.1panPan2
CALCOCO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,525,569 - 1,542,256 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,525,687 - 1,542,269 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2744,707,917 - 44,724,581 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0271,529,078 - 1,545,764 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl271,529,155 - 1,545,777 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,546,299 - 1,562,957 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,528,377 - 1,545,051 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02745,111,244 - 45,127,916 (-)NCBIUU_Cfam_GSD_1.0
Calcoco1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494562,200,417 - 62,217,004 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651210,947,681 - 10,964,431 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651210,947,826 - 10,964,372 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALCOCO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,910,700 - 18,930,321 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1518,910,698 - 18,930,402 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2519,356,276 - 19,375,989 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CALCOCO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11149,816,546 - 49,833,655 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1149,814,007 - 49,833,632 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037196,211,874 - 196,229,228 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Calcoco1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249041,790,587 - 1,809,277 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249041,792,861 - 1,809,265 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CALCOCO1
36 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q13.13(chr12:53099658-53724525)x1 copy number loss See cases [RCV000052811] Chr12:53099658..53724525 [GRCh38]
Chr12:53493442..54118309 [GRCh37]
Chr12:51779709..52404576 [NCBI36]
Chr12:12q13.13		 pathogenic
GRCh38/hg38 12q13.13(chr12:53224024-54222450)x1 copy number loss See cases [RCV000052812] Chr12:53224024..54222450 [GRCh38]
Chr12:53617808..54616234 [GRCh37]
Chr12:51904075..52902501 [NCBI36]
Chr12:12q13.13		 pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33		 pathogenic
GRCh38/hg38 12q13.13-13.3(chr12:53420606-56202942)x3 copy number gain See cases [RCV000141435] Chr12:53420606..56202942 [GRCh38]
Chr12:53814390..56596726 [GRCh37]
Chr12:52100657..54882993 [NCBI36]
Chr12:12q13.13-13.3		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic|likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
NC_000012.11:g.26370251_54361538inv inversion not specified [RCV000714265] Chr12:26370251..54361538 [GRCh37]
Chr12:12p12.1-q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.334C>A (p.Gln112Lys) single nucleotide variant not specified [RCV004288123] Chr12:53723709 [GRCh38]
Chr12:54117493 [GRCh37]
Chr12:12q13.13		 uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
Single allele deletion Neurodevelopmental disorder [RCV000787381] Chr12:53784698..54741363 [GRCh37]
Chr12:12q13.13		 pathogenic
NM_020898.3(CALCOCO1):c.885C>A (p.His295Gln) single nucleotide variant not specified [RCV004153153] Chr12:53716380 [GRCh38]
Chr12:54110164 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1873G>C (p.Gly625Arg) single nucleotide variant not specified [RCV004154025] Chr12:53713125 [GRCh38]
Chr12:54106909 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1614C>G (p.Asp538Glu) single nucleotide variant not specified [RCV004231279] Chr12:53713878 [GRCh38]
Chr12:54107662 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.34C>T (p.Arg12Cys) single nucleotide variant not specified [RCV004122713] Chr12:53725209 [GRCh38]
Chr12:54118993 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1694C>T (p.Ala565Val) single nucleotide variant not specified [RCV004199441] Chr12:53713798 [GRCh38]
Chr12:54107582 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.482A>G (p.Asn161Ser) single nucleotide variant not specified [RCV004221552] Chr12:53722152 [GRCh38]
Chr12:54115936 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.944A>C (p.Gln315Pro) single nucleotide variant not specified [RCV004240101] Chr12:53716321 [GRCh38]
Chr12:54110105 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.314G>A (p.Arg105His) single nucleotide variant not specified [RCV004247092] Chr12:53723729 [GRCh38]
Chr12:54117513 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.329G>A (p.Cys110Tyr) single nucleotide variant not specified [RCV004137915] Chr12:53723714 [GRCh38]
Chr12:54117498 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.23G>A (p.Arg8Gln) single nucleotide variant not specified [RCV004100392] Chr12:53725220 [GRCh38]
Chr12:54119004 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1814T>G (p.Val605Gly) single nucleotide variant not specified [RCV004163839] Chr12:53713184 [GRCh38]
Chr12:54106968 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1500G>A (p.Met500Ile) single nucleotide variant not specified [RCV004241078] Chr12:53714224 [GRCh38]
Chr12:54108008 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1433C>A (p.Ala478Asp) single nucleotide variant not specified [RCV004089098] Chr12:53714647 [GRCh38]
Chr12:54108431 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1118G>A (p.Arg373Lys) single nucleotide variant not specified [RCV004229190] Chr12:53715935 [GRCh38]
Chr12:54109719 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1111G>A (p.Ala371Thr) single nucleotide variant not specified [RCV004230486] Chr12:53715942 [GRCh38]
Chr12:54109726 [GRCh37]
Chr12:12q13.13		 likely benign
NM_020898.3(CALCOCO1):c.1357G>A (p.Glu453Lys) single nucleotide variant not specified [RCV004105189] Chr12:53715229 [GRCh38]
Chr12:54109013 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1658G>A (p.Gly553Asp) single nucleotide variant not specified [RCV004155381] Chr12:53713834 [GRCh38]
Chr12:54107618 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.575G>T (p.Arg192Met) single nucleotide variant not specified [RCV004230487] Chr12:53722059 [GRCh38]
Chr12:54115843 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.2071G>C (p.Glu691Gln) single nucleotide variant not specified [RCV004086420] Chr12:53711949 [GRCh38]
Chr12:54105733 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.271C>T (p.Pro91Ser) single nucleotide variant not specified [RCV004329536] Chr12:53723772 [GRCh38]
Chr12:54117556 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1555G>A (p.Ala519Thr) single nucleotide variant not specified [RCV004261541] Chr12:53714169 [GRCh38]
Chr12:54107953 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1367G>A (p.Arg456Gln) single nucleotide variant not specified [RCV004253168] Chr12:53715219 [GRCh38]
Chr12:54109003 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1409G>A (p.Arg470Gln) single nucleotide variant not specified [RCV004283252] Chr12:53714671 [GRCh38]
Chr12:54108455 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1925A>G (p.Glu642Gly) single nucleotide variant not specified [RCV004260647] Chr12:53712095 [GRCh38]
Chr12:54105879 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.442G>C (p.Val148Leu) single nucleotide variant not specified [RCV004312994] Chr12:53723601 [GRCh38]
Chr12:54117385 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1037G>A (p.Arg346Gln) single nucleotide variant not specified [RCV004339282] Chr12:53716016 [GRCh38]
Chr12:54109800 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.587C>T (p.Thr196Met) single nucleotide variant not specified [RCV004340913] Chr12:53722047 [GRCh38]
Chr12:54115831 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.65G>A (p.Arg22Gln) single nucleotide variant not specified [RCV004347978] Chr12:53725178 [GRCh38]
Chr12:54118962 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1949C>A (p.Thr650Asn) single nucleotide variant not specified [RCV004357219] Chr12:53712071 [GRCh38]
Chr12:54105855 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1670G>A (p.Arg557His) single nucleotide variant not specified [RCV004353765] Chr12:53713822 [GRCh38]
Chr12:54107606 [GRCh37]
Chr12:12q13.13		 likely benign
NM_020898.3(CALCOCO1):c.1124G>A (p.Arg375His) single nucleotide variant not specified [RCV004338220] Chr12:53715929 [GRCh38]
Chr12:54109713 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1703G>A (p.Arg568Gln) single nucleotide variant not specified [RCV004339192] Chr12:53713789 [GRCh38]
Chr12:54107573 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1677C>G (p.Asp559Glu) single nucleotide variant not specified [RCV004336715] Chr12:53713815 [GRCh38]
Chr12:54107599 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.459C>T (p.Leu153=) single nucleotide variant not provided [RCV003391859] Chr12:53722175 [GRCh38]
Chr12:54115959 [GRCh37]
Chr12:12q13.13		 likely benign
GRCh37/hg19 12q13.13(chr12:53502510-54256094)x3 copy number gain not specified [RCV003986989] Chr12:53502510..54256094 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1558A>G (p.Thr520Ala) single nucleotide variant not specified [RCV004434499] Chr12:53714166 [GRCh38]
Chr12:54107950 [GRCh37]
Chr12:12q13.13		 likely benign
NM_020898.3(CALCOCO1):c.1151G>A (p.Arg384His) single nucleotide variant not specified [RCV004434496] Chr12:53715902 [GRCh38]
Chr12:54109686 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1517G>A (p.Arg506His) single nucleotide variant not specified [RCV004434498] Chr12:53714207 [GRCh38]
Chr12:54107991 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1936G>A (p.Gly646Arg) single nucleotide variant not specified [RCV004434500] Chr12:53712084 [GRCh38]
Chr12:54105868 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.986G>T (p.Gly329Val) single nucleotide variant not specified [RCV004434503] Chr12:53716279 [GRCh38]
Chr12:54110063 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.1192G>A (p.Gly398Ser) single nucleotide variant not specified [RCV004434497] Chr12:53715861 [GRCh38]
Chr12:54109645 [GRCh37]
Chr12:12q13.13		 likely benign
NM_020898.3(CALCOCO1):c.539G>A (p.Arg180Gln) single nucleotide variant not specified [RCV004434501] Chr12:53722095 [GRCh38]
Chr12:54115879 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_020898.3(CALCOCO1):c.922G>C (p.Glu308Gln) single nucleotide variant not specified [RCV004434502] Chr12:53716343 [GRCh38]
Chr12:54110127 [GRCh37]
Chr12:12q13.13		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6519
Count of miRNA genes:1169
Interacting mature miRNAs:1514
Transcripts:ENST00000262059, ENST00000430117, ENST00000546443, ENST00000546619, ENST00000546774, ENST00000547885, ENST00000547949, ENST00000547988, ENST00000548177, ENST00000548263, ENST00000548431, ENST00000549173, ENST00000549349, ENST00000549613, ENST00000549688, ENST00000549784, ENST00000549935, ENST00000550804, ENST00000551900, ENST00000552282, ENST00000552623, ENST00000553154
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH8151  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371254,104,926 - 54,105,085UniSTSGRCh37
Build 361252,391,193 - 52,391,352RGDNCBI36
Celera1253,754,841 - 53,755,000RGD
Cytogenetic Map12q13.13UniSTS
HuRef1251,142,921 - 51,143,080UniSTS
STS-T71651  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371254,105,002 - 54,105,127UniSTSGRCh37
Build 361252,391,269 - 52,391,394RGDNCBI36
Celera1253,754,917 - 53,755,042RGD
Cytogenetic Map12q13.13UniSTS
HuRef1251,142,997 - 51,143,122UniSTS
GeneMap99-GB4 RH Map12229.2UniSTS
WI-11261  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371254,104,955 - 54,105,105UniSTSGRCh37
Build 361252,391,222 - 52,391,372RGDNCBI36
Celera1253,754,870 - 53,755,020RGD
Cytogenetic Map12q13.13UniSTS
HuRef1251,142,950 - 51,143,100UniSTS
GeneMap99-GB4 RH Map12229.2UniSTS
Whitehead-RH Map12329.0UniSTS
ksks136  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371254,118,503 - 54,118,921UniSTSGRCh37
Celera1253,768,418 - 53,768,836UniSTS
HuRef1251,156,506 - 51,156,924UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2405 2866 1632 535 1748 375 4167 2128 3495 390 1422 1562 174 1 1204 2788 6 2
Low 34 125 94 89 203 90 190 69 239 29 38 51 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001143682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_026554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054372674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054372675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB040969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC076968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF370415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK092788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK222646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL136895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY211909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY563137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX538208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD723746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR533567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB060684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000262059   ⟹   ENSP00000262059
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,708,517 - 53,727,745 (-)Ensembl
RefSeq Acc Id: ENST00000430117   ⟹   ENSP00000397189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,711,119 - 53,727,439 (-)Ensembl
RefSeq Acc Id: ENST00000546443   ⟹   ENSP00000456437
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,711,119 - 53,714,629 (-)Ensembl
RefSeq Acc Id: ENST00000546619   ⟹   ENSP00000448621
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,722,155 - 53,727,452 (-)Ensembl
RefSeq Acc Id: ENST00000546774
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,724,583 - 53,727,452 (-)Ensembl
RefSeq Acc Id: ENST00000547885
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,724,044 - 53,727,467 (-)Ensembl
RefSeq Acc Id: ENST00000547949
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,722,164 - 53,725,267 (-)Ensembl
RefSeq Acc Id: ENST00000547988
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,719,772 - 53,727,452 (-)Ensembl
RefSeq Acc Id: ENST00000548177   ⟹   ENSP00000446820
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,723,640 - 53,727,452 (-)Ensembl
RefSeq Acc Id: ENST00000548263   ⟹   ENSP00000447647
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,711,159 - 53,727,428 (-)Ensembl
RefSeq Acc Id: ENST00000548431
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,724,404 - 53,727,491 (-)Ensembl
RefSeq Acc Id: ENST00000549173   ⟹   ENSP00000449058
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,723,621 - 53,727,451 (-)Ensembl
RefSeq Acc Id: ENST00000549349   ⟹   ENSP00000450012
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,723,696 - 53,727,457 (-)Ensembl
RefSeq Acc Id: ENST00000549613
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,714,137 - 53,716,349 (-)Ensembl
RefSeq Acc Id: ENST00000549688   ⟹   ENSP00000449796
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,723,729 - 53,726,340 (-)Ensembl
RefSeq Acc Id: ENST00000549784   ⟹   ENSP00000447117
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,723,594 - 53,727,606 (-)Ensembl
RefSeq Acc Id: ENST00000549935
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,713,170 - 53,727,452 (-)Ensembl
RefSeq Acc Id: ENST00000550804   ⟹   ENSP00000449960
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,708,517 - 53,727,452 (-)Ensembl
RefSeq Acc Id: ENST00000551900   ⟹   ENSP00000450083
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,722,140 - 53,727,452 (-)Ensembl
RefSeq Acc Id: ENST00000552282
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,715,675 - 53,719,778 (-)Ensembl
RefSeq Acc Id: ENST00000552623   ⟹   ENSP00000448026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,723,683 - 53,726,340 (-)Ensembl
RefSeq Acc Id: ENST00000553154
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1253,723,550 - 53,727,452 (-)Ensembl
RefSeq Acc Id: NM_001143682   ⟹   NP_001137154
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381253,708,517 - 53,727,452 (-)NCBI
GRCh371254,104,902 - 54,121,307 (-)RGD
Celera1253,754,817 - 53,771,222 (-)RGD
HuRef1251,142,897 - 51,159,310 (-)RGD
CHM1_11254,071,839 - 54,088,243 (-)NCBI
T2T-CHM13v2.01253,674,269 - 53,693,205 (-)NCBI
Sequence:
RefSeq Acc Id: NM_020898   ⟹   NP_065949
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381253,708,517 - 53,727,452 (-)NCBI
GRCh371254,104,902 - 54,121,307 (-)RGD
Build 361252,391,169 - 52,407,486 (-)NCBI Archive
Celera1253,754,817 - 53,771,222 (-)RGD
HuRef1251,142,897 - 51,159,310 (-)RGD
CHM1_11254,071,838 - 54,088,243 (-)NCBI
T2T-CHM13v2.01253,674,269 - 53,693,205 (-)NCBI
Sequence:
RefSeq Acc Id: NR_026554
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381253,708,517 - 53,727,452 (-)NCBI
GRCh371254,104,902 - 54,121,307 (-)RGD
Celera1253,754,817 - 53,771,222 (-)RGD
HuRef1251,142,897 - 51,159,310 (-)RGD
CHM1_11254,071,838 - 54,088,243 (-)NCBI
T2T-CHM13v2.01253,674,269 - 53,693,205 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011538601   ⟹   XP_011536903
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381253,708,517 - 53,727,452 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011538602   ⟹   XP_011536904
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381253,708,517 - 53,727,452 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011538603   ⟹   XP_011536905
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381253,708,517 - 53,727,452 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011538604   ⟹   XP_011536906
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381253,708,517 - 53,727,452 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054372674   ⟹   XP_054228649
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01253,674,269 - 53,693,205 (-)NCBI
RefSeq Acc Id: XM_054372675   ⟹   XP_054228650
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01253,674,269 - 53,693,205 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001137154 (Get FASTA)   NCBI Sequence Viewer  
  NP_065949 (Get FASTA)   NCBI Sequence Viewer  
  XP_011536903 (Get FASTA)   NCBI Sequence Viewer  
  XP_011536904 (Get FASTA)   NCBI Sequence Viewer  
  XP_011536905 (Get FASTA)   NCBI Sequence Viewer  
  XP_011536906 (Get FASTA)   NCBI Sequence Viewer  
  XP_054228649 (Get FASTA)   NCBI Sequence Viewer  
  XP_054228650 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH03177 (Get FASTA)   NCBI Sequence Viewer  
  AAO65163 (Get FASTA)   NCBI Sequence Viewer  
  AAQ15251 (Get FASTA)   NCBI Sequence Viewer  
  AAQ88763 (Get FASTA)   NCBI Sequence Viewer  
  AAT68474 (Get FASTA)   NCBI Sequence Viewer  
  BAA96060 (Get FASTA)   NCBI Sequence Viewer  
  BAB55428 (Get FASTA)   NCBI Sequence Viewer  
  BAG52609 (Get FASTA)   NCBI Sequence Viewer  
  BAG53720 (Get FASTA)   NCBI Sequence Viewer  
  BAG57671 (Get FASTA)   NCBI Sequence Viewer  
  BAG59131 (Get FASTA)   NCBI Sequence Viewer  
  CAB66829 (Get FASTA)   NCBI Sequence Viewer  
  CAD98068 (Get FASTA)   NCBI Sequence Viewer  
  CAG38598 (Get FASTA)   NCBI Sequence Viewer  
  EAW96727 (Get FASTA)   NCBI Sequence Viewer  
  EAW96728 (Get FASTA)   NCBI Sequence Viewer  
  EAW96729 (Get FASTA)   NCBI Sequence Viewer  
  EAW96730 (Get FASTA)   NCBI Sequence Viewer  
  EAW96731 (Get FASTA)   NCBI Sequence Viewer  
  EAW96732 (Get FASTA)   NCBI Sequence Viewer  
  EAW96733 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000262059.4
  ENSP00000397189
  ENSP00000397189.2
  ENSP00000446820.1
  ENSP00000447117.1
  ENSP00000447647.1
  ENSP00000448026.1
  ENSP00000448621.1
  ENSP00000449058.1
  ENSP00000449796.1
  ENSP00000449960
  ENSP00000449960.1
  ENSP00000450012.1
  ENSP00000450083.1
  ENSP00000456437.1
GenBank Protein Q9P1Z2 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_065949   ⟸   NM_020898
- Peptide Label: isoform 1
- UniProtKB: Q9H090 (UniProtKB/Swiss-Prot),   Q9P1Z2 (UniProtKB/Swiss-Prot),   Q96JU3 (UniProtKB/Swiss-Prot),   Q86WF8 (UniProtKB/Swiss-Prot),   Q71RC3 (UniProtKB/Swiss-Prot),   Q6FI59 (UniProtKB/Swiss-Prot),   B3KVA8 (UniProtKB/Swiss-Prot),   B3KS47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001137154   ⟸   NM_001143682
- Peptide Label: isoform 2
- UniProtKB: B3KS47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011536904   ⟸   XM_011538602
- Peptide Label: isoform X1
- UniProtKB: B3KS47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011536903   ⟸   XM_011538601
- Peptide Label: isoform X1
- UniProtKB: B3KS47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011536906   ⟸   XM_011538604
- Peptide Label: isoform X1
- UniProtKB: B3KS47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011536905   ⟸   XM_011538603
- Peptide Label: isoform X1
- UniProtKB: B3KS47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000448621   ⟸   ENST00000546619
RefSeq Acc Id: ENSP00000456437   ⟸   ENST00000546443
RefSeq Acc Id: ENSP00000447647   ⟸   ENST00000548263
RefSeq Acc Id: ENSP00000446820   ⟸   ENST00000548177
RefSeq Acc Id: ENSP00000450012   ⟸   ENST00000549349
RefSeq Acc Id: ENSP00000449058   ⟸   ENST00000549173
RefSeq Acc Id: ENSP00000447117   ⟸   ENST00000549784
RefSeq Acc Id: ENSP00000449796   ⟸   ENST00000549688
RefSeq Acc Id: ENSP00000397189   ⟸   ENST00000430117
RefSeq Acc Id: ENSP00000449960   ⟸   ENST00000550804
RefSeq Acc Id: ENSP00000262059   ⟸   ENST00000262059
RefSeq Acc Id: ENSP00000450083   ⟸   ENST00000551900
RefSeq Acc Id: ENSP00000448026   ⟸   ENST00000552623
RefSeq Acc Id: XP_054228649   ⟸   XM_054372674
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054228650   ⟸   XM_054372675
- Peptide Label: isoform X1
Protein Domains
Calcium binding and coiled-coil   SKICH   UBZ1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9P1Z2-F1-model_v2 AlphaFold Q9P1Z2 1-691 view protein structure

Promoters
RGD ID:6790172
Promoter ID:HG_KWN:15774
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000342760,   NM_001143682,   NR_026554,   UC001SEF.1,   UC001SEG.1,   UC001SEH.1,   UC009ZND.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361252,407,161 - 52,407,937 (-)MPROMDB
RGD ID:7224157
Promoter ID:EPDNEW_H17824
Type:single initiation site
Name:CALCOCO1_2
Description:calcium binding and coiled-coil domain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17825  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381253,726,603 - 53,726,663EPDNEW
RGD ID:7224159
Promoter ID:EPDNEW_H17825
Type:initiation region
Name:CALCOCO1_1
Description:calcium binding and coiled-coil domain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17824  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381253,727,446 - 53,727,506EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:29306 AgrOrtholog
COSMIC CALCOCO1 COSMIC
Ensembl Genes ENSG00000012822 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000262059.8 UniProtKB/Swiss-Prot
  ENST00000430117 ENTREZGENE
  ENST00000430117.6 UniProtKB/Swiss-Prot
  ENST00000546443.5 UniProtKB/TrEMBL
  ENST00000546619.5 UniProtKB/TrEMBL
  ENST00000548177.5 UniProtKB/TrEMBL
  ENST00000548263.5 UniProtKB/Swiss-Prot
  ENST00000549173.5 UniProtKB/TrEMBL
  ENST00000549349.5 UniProtKB/TrEMBL
  ENST00000549688.1 UniProtKB/TrEMBL
  ENST00000549784.5 UniProtKB/TrEMBL
  ENST00000550804 ENTREZGENE
  ENST00000550804.6 UniProtKB/Swiss-Prot
  ENST00000551900.5 UniProtKB/TrEMBL
  ENST00000552623.5 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.2840 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.20.250.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000012822 GTEx
HGNC ID HGNC:29306 ENTREZGENE
Human Proteome Map CALCOCO1 Human Proteome Map
InterPro CALCOCO1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CALCOCO1/2_Zn-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKICH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:57658 UniProtKB/Swiss-Prot
NCBI Gene 57658 ENTREZGENE
PANTHER CALCIUM-BINDING AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKICH DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CALCOCO1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKICH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zn-C2H2_12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA128394699 PharmGKB
PROSITE ZF_UBZ1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B3KS47 ENTREZGENE, UniProtKB/TrEMBL
  B3KVA8 ENTREZGENE
  CACO1_HUMAN UniProtKB/Swiss-Prot
  F8VPN1_HUMAN UniProtKB/TrEMBL
  F8VQE3_HUMAN UniProtKB/TrEMBL
  F8VRQ9_HUMAN UniProtKB/TrEMBL
  F8VUB3_HUMAN UniProtKB/TrEMBL
  F8VWP8_HUMAN UniProtKB/TrEMBL
  F8VXS2_HUMAN UniProtKB/TrEMBL
  F8VZI3_HUMAN UniProtKB/TrEMBL
  F8W0X2_HUMAN UniProtKB/TrEMBL
  H3BRW8_HUMAN UniProtKB/TrEMBL
  L8ECJ1_HUMAN UniProtKB/TrEMBL
  Q6FI59 ENTREZGENE
  Q71RC3 ENTREZGENE
  Q86WF8 ENTREZGENE
  Q96JU3 ENTREZGENE
  Q9H090 ENTREZGENE
  Q9P1Z2 ENTREZGENE
UniProt Secondary B3KVA8 UniProtKB/Swiss-Prot
  Q6FI59 UniProtKB/Swiss-Prot
  Q71RC3 UniProtKB/Swiss-Prot
  Q86WF8 UniProtKB/Swiss-Prot
  Q96JU3 UniProtKB/Swiss-Prot
  Q9H090 UniProtKB/Swiss-Prot