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Gene: Rragb (Ras-related GTP binding B) Rattus norvegicus

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Symbol:

Rragb

Name:

Ras-related GTP binding B

RGD ID:

619805

Description:

Enables GTP binding activity. Predicted to be involved in several processes, including cellular response to leucine starvation; negative regulation of autophagy; and positive regulation of TORC1 signaling. Predicted to be located in cytoplasm. Predicted to be part of Gtr1-Gtr2 GTPase complex. Predicted to be active in lysosome and nucleus. Orthologous to human RRAGB (Ras related GTP binding B); PARTICIPATES IN mTOR signaling pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GTP-binding protein ragB; MGC105357; rag B; Ragb; ras-related GTP-binding protein B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RRAGB (Ras related GTP binding B)	RGD	RGD
Mus musculus (house mouse):	Rragb (Ras-related GTP binding B)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Rragb (Ras related GTP binding B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RRAGB (Ras related GTP binding B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RRAGB (Ras related GTP binding B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rragb (Ras related GTP binding B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RRAGB (Ras related GTP binding B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RRAGB (Ras related GTP binding B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rragb (Ras related GTP binding B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rragb (Ras related GTP binding B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RRAGB (Ras related GTP binding B)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rragb (Ras-related GTP binding B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rraga (Ras-related GTP binding A)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rraga (Ras-related GTP binding A)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	GTR1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	GTR1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RagA-B	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	raga-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rraga	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	rraga	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Allele / Splice:

Rragb_v1 ; Rragb_v2

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	21,560,313 - 21,610,550 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	21,560,361 - 21,610,346 (-)	Ensembl				GRCr8
mRatBN7.2	X	18,184,619 - 18,234,639 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	18,184,992 - 18,234,639 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	15,603,770 - 15,635,471 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	24,489,470 - 24,521,171 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	18,664,290 - 18,695,991 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	19,085,913 - 19,135,049 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	19,101,522 - 19,134,869 (-)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	X	19,336,372 - 19,369,746 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	20,103,258 - 20,136,624 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	38,352,967 - 38,384,643 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	18,476,842 - 18,508,518 (-)	NCBI		Celera
RGSC_v3.1	X	38,406,474 - 38,438,064 (-)	NCBI
Cytogenetic Map	X	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

aflatoxin B1 (EXP)

all-trans-retinoic acid (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

flavonoids (EXP)

folic acid (ISO)

manganese(II) chloride (EXP)

methylmercury chloride (ISO)

Moniliformin (ISO)

nickel atom (ISO)

okadaic acid (ISO)

paracetamol (ISO)

pentanal (ISO)

resveratrol (ISO)

rifampicin (ISO)

senecionine (ISO)

silicon dioxide (ISO)

temozolomide (ISO)

thapsigargin (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

urethane (ISO)

valproic acid (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cellular response to amino acid starvation (IEA,ISO)

cellular response to amino acid stimulus (IEA,ISO,ISS)

cellular response to leucine starvation (IEA,ISO)

cellular response to starvation (IBA)

intracellular protein localization (IEA,ISO,ISS)

negative regulation of autophagy (IBA)

positive regulation of TOR signaling (IEA,ISO,ISS)

positive regulation of TORC1 signaling (IBA,IEA,ISO)

regulation of TOR signaling (IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO,ISS)

Gtr1-Gtr2 GTPase complex (IBA,IEA,ISO)

lysosomal membrane (IEA)

lysosome (IBA,IEA,ISO,ISS)

nucleus (IBA)

Molecular Function

GTP binding (IBA,IDA,IEA,ISO,ISS)

GTPase activity (IBA,IEA)

GTPase binding (IEA,ISO)

guanyl ribonucleotide binding (IEA,ISO,ISS)

hydrolase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mTOR signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Regulation of mTORC1 by amino acids.	Bar-Peled L and Sabatini DM, Trends Cell Biol. 2014 Jul;24(7):400-6. doi: 10.1016/j.tcb.2014.03.003. Epub 2014 Mar 31.
2.	Molecular cloning and characterization of six cDNAs expressed during glucose starvation in excised maize (Zea mays L.) root tips.	Chevalier C, etal., Plant Mol Biol 1995 Jun;28(3):473-85.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Molecular mechanisms of mTOR-mediated translational control.	Ma XM and Blenis J, Nat Rev Mol Cell Biol. 2009 May;10(5):307-18. Epub 2009 Apr 2.
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation
9.	Cloning of a novel family of mammalian GTP-binding proteins (RagA, RagBs, RagB1) with remote similarity to the Ras-related GTPases.	Schurmann A, etal., J Biol Chem 1995 Dec 1;270(48):28982-8.
10.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:9394008	PMID:15489334	PMID:17897319	PMID:20381137	PMID:22424946	PMID:22575674	PMID:23723238

Genomics

Comparative Map Data

Rragb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	21,560,313 - 21,610,550 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	21,560,361 - 21,610,346 (-)	Ensembl				GRCr8
mRatBN7.2	X	18,184,619 - 18,234,639 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	18,184,992 - 18,234,639 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	15,603,770 - 15,635,471 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	24,489,470 - 24,521,171 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	18,664,290 - 18,695,991 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	19,085,913 - 19,135,049 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	19,101,522 - 19,134,869 (-)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	X	19,336,372 - 19,369,746 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	20,103,258 - 20,136,624 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	38,352,967 - 38,384,643 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	18,476,842 - 18,508,518 (-)	NCBI		Celera
RGSC_v3.1	X	38,406,474 - 38,438,064 (-)	NCBI
Cytogenetic Map	X	q12	NCBI

RRAGB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	55,717,749 - 55,758,774 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	55,717,743 - 55,758,774 (+)	Ensembl			hg38	GRCh38
GRCh37	X	55,744,182 - 55,785,207 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	55,760,904 - 55,801,932 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	55,627,199 - 55,668,227	NCBI
Celera	X	59,582,631 - 59,623,721 (+)	NCBI		Celera
Cytogenetic Map	X	p11.21	NCBI
HuRef	X	52,797,429 - 52,838,892 (+)	NCBI		HuRef
CHM1_1	X	55,734,228 - 55,775,318 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	55,010,926 - 55,051,952 (+)	NCBI		T2T-CHM13v2.0

Rragb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	151,920,640 - 151,973,188 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	151,922,977 - 151,954,939 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	153,137,644 - 153,190,192 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	153,139,981 - 153,171,943 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	149,574,501 - 149,606,486 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	148,480,716 - 148,512,659 (+)	NCBI		MGSCv36	mm8
Celera	X	136,082,622 - 136,114,670 (-)	NCBI		Celera
Cytogenetic Map	X	F3	NCBI
cM Map	X	68.46	NCBI

Rragb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955475	2,662,868 - 2,696,364 (+)	Ensembl
ChiLan1.0	NW_004955475	2,662,969 - 2,692,253 (+)	NCBI	ChiLan1.0	ChiLan1.0

RRAGB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	57,173,092 - 57,211,949 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	57,176,828 - 57,216,049 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	48,003,566 - 48,042,285 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	56,155,662 - 56,194,335 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	56,155,662 - 56,194,335 (+)	Ensembl			panPan2	panpan1.1

RRAGB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	47,323,427 - 47,361,551 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	47,323,269 - 47,361,138 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	38,516,639 - 38,554,727 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	47,577,861 - 47,616,565 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	47,577,665 - 47,616,152 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	46,816,268 - 46,854,351 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	47,554,657 - 47,592,735 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	47,476,313 - 47,514,405 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rragb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	40,046,042 - 40,078,894 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936819	955,527 - 988,644 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936819	946,874 - 988,531 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RRAGB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	48,286,592 - 48,330,195 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	48,286,584 - 48,330,196 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	54,154,898 - 54,165,886 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RRAGB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	51,806,561 - 51,848,263 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	51,806,596 - 51,848,502 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666086	5,877,647 - 5,919,125 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rragb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624910	727,034 - 760,671 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624910	726,467 - 760,293 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rragb
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	18,380,032 - 18,412,414 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rragb
232 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	801
Count of miRNA genes:	273
Interacting mature miRNAs:	358
Transcripts:	ENSRNOT00000004235, ENSRNOT00000064368
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	8111486	53111486	Rat
634325	Bw13	Body weight QTL 13	0		body mass (VT:0001259)	body weight (CMO:0000012)	X	4001493	24470521	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endoderm	hemolymphoid system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
7	1	18	73	2	67	138	95	11	72	36	36	2	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC078760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004235 ⟹ ENSRNOP00000004235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	21,578,670 - 21,610,346 (-)	Ensembl
mRatBN7.2 Ensembl	X	18,202,964 - 18,234,639 (-)	Ensembl
Rnor_6.0 Ensembl	X	19,101,522 - 19,134,869 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000075249 ⟹ ENSRNOP00000066990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	21,560,361 - 21,610,346 (-)	Ensembl
mRatBN7.2 Ensembl	X	18,184,992 - 18,234,634 (-)	Ensembl
Rnor_6.0 Ensembl	X	19,336,372 - 19,369,746 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103425 ⟹ ENSRNOP00000080942

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	21,578,670 - 21,609,826 (-)	Ensembl
mRatBN7.2 Ensembl	X	18,202,964 - 18,234,119 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117263 ⟹ ENSRNOP00000077577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	21,576,676 - 21,610,346 (-)	Ensembl
mRatBN7.2 Ensembl	X	18,203,133 - 18,234,608 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126370 ⟹ ENSRNOP00000108946

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	21,578,670 - 21,610,346 (-)	Ensembl

RefSeq Acc Id:

NM_053972 ⟹ NP_446424

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	21,578,670 - 21,610,346 (-)	NCBI
mRatBN7.2	X	18,202,963 - 18,234,639 (-)	NCBI
Rnor_6.0	X	19,103,209 - 19,134,885 (-)	NCBI
Rnor_5.0	X	20,103,258 - 20,136,624 (-)	NCBI
RGSC_v3.4	X	38,352,967 - 38,384,643 (-)	RGD
Celera	X	18,476,842 - 18,508,518 (-)	RGD

Sequence:

show sequence

GGCCTGCAGTAGCGTGGTTGCAGTGAGGTTCTTGCGCTCCTGAAGGGCGGGCGCGGAAGTAAGA
GCATCCTCAGGCGGTCTGTGACTGGCAGCGAGGTCGAGAGGAGCCACCAGGCAGTGACCGCTTT
GCTTCTGCAGCTCGGCTCAGCTCATTCCGTTATCTCAGCCTTTGCAGTCTGCACAGAAGCTGAC
CAAGTTACCTTTGGGTCTTGAGACCTGGGAGAGTGAGGCCCAAACTCGGGACCAACTCCTCATC
TACCTTGCCCTCCCTCTCCTCCATCTCTTCCTTTGCATGCACGAATCGCTTGCTCCTTTGGGCT
GGCTTGCTCGGCTGTGCCTGGAGACTAAGTTCGGGTCGGTAAAGGTAACTGTGGGAAAAGCGGC
CCCCCAGTGGACAAAGGCGGAGGCAGGGATAGAGCAGGCCCCGCGGGCCCTGGGCGCTGAGCAT
AGGCAGTAGAGAAGGTGAGCCAGAAGAACAGTACTGCGGATTTAGAAGGCACTGTGAAGGACTT
GTTGCGCGATGGAAGAATCTGACTCCGAGAAAAAGACGGAGAAAGAGAATGTGGGCCCAAAAGT
GGAGCCTCCTCTAGGGGAGCCGGAAGGATCGCTTGGGTGGGCAATGCCAAATGCAGCCATGAAG
AAAAAGGTGCTGTTGATGGGTAAAAGTGGATCTGGTAAGACCAGCATGAGGTCTATTATCTTTG
CAAATTATATTGCCAGAGACACACGTCGTCTTGGTGCAACAATACTAGACCGTATACATAGTCT
TCAAATTAATAGCAGTTTGAGCACCTACTCTCTCGTAGACTCTGTTGGAAATACAAAGACATTT
GATGTAGAACATTCTCATGTTCGATTTCTGGGAAACCTGGTTTTGAACCTGTGGGATTGTGGTG
GACAAGACACCTTCATGGAAAATTACTTCACTAGCCAGCGTGACAACATCTTCCGAAATGTGGA
GGTTCTGATTTATGTCTTTGACGTGGAGAGCCGTGAACTCGAGAAAGACATGCACTACTATCAG
TCATGCCTTGAGGCTATTCTGCAGAATTCCCCAGAAGCCAAAATCTTTTGCTTGGTACACAAAA
TGGATTTGGTCCAGGAGGATCAGCGAGACTTGATTTTTAAAGAACGAGAAGAAGACTTAAGGCG
TTTATCGCGTCCGTTAGAATGTTCTTGTTTCCGAACATCTATCTGGGATGAAACTCTGTATAAG
GCTTGGTCCAGCATTGTTTATCAGCTGATTCCCAATGTTCAGCAACTGGAAATGAACCTGCGCA
ATTTTGCTGAAATTATTGAGGCTGATGAAGTACTTCTGTTTGAGAGAGCTACCTTTCTGGTGAT
TTCTCACTATCAGTGTAAAGAACAGCGAGATGCCCACCGATTTGAGAAAATCAGCAACATTATT
AAGCAGTTCAAGCTGAGCTGTAGCAAGCTGGCTGCCTCTTTCCAGAGTATGGAAGTCAGGAATT
CTAACTTTGCTGCTTTCATTGACATATTCACATCCAACACTTACGTCATGGTCGTGATGTCTGA
TCCATCCATTCCTTCTGCAGCTACTCTGATCAACATCCGCAATGCCAGAAAACACTTTGAAAAG
CTGGAGAGAGTGGATGGACCAAAACAGTGTCTTCTCATGCGCTAAACATTGCCGAATATTGTTT
CACACAAAATAATTGAAACACTGTTTCTTAATTTTATTGTATTCATATATGTAGGCTCTGAAAT
ATTGTGATGCTCACTGCTTCTGTATTTCTTCTCTACTCTCCAGTCTTAACATTTATCTTTGAAT
GCTATTTATTCAAATAGCTTGAGGAGTTAGAAGATGAGGTGTCTATGAAGTTGATGTAACGTAT
ACGTAGGCGATATATGTAAGTGTTCTGATAACATGATTCTAATGGTGTTTTAAGTGTTCTGATA
ACCTGCTTTTAATAGTTGTGTATGCCAAAGTCTTTCCCAGAACCTCTTGTATTCACTATCAAAT
ATATACATGTAAGTTTTAAGTATTACTGTTTTCTCAGCATGAATTAAAAATATTCCGTAACTCA
ACCAGGCAACGTAGCTCATGCCTGTGACCCCAGCAGTTGAGAAGCAGAGACAAGAGGATTGCTG
CAAGTTTGAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAAGTATATATCAAGATCTTGTTT
CAAAAACAAGATACACACACACACACACACACACCACTTAACTTCGATGTAAATAAACTTCTGC
TGTTAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256775 ⟹ XP_006256837

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	21,577,331 - 21,610,550 (-)	NCBI
mRatBN7.2	X	18,201,311 - 18,234,576 (-)	NCBI
Rnor_6.0	X	19,101,557 - 19,135,047 (-)	NCBI

Sequence:

show sequence

CAATGGCGCGGAAATGAGAGCCCGAGCCACGTGATGGCGGGTGGCACTCTGGCTTTCCTAAAGC
AGTCTCTATGGTATTCTTCCAAGCAAACCCAGGGCCCCCCCAAAAGGGTAGCGGCACGTGACAG
GCCCTGGGACTACGGCAGGTTCCCACGTGATCCTGGCCTGCAGTAGCGTGGTTGCAGTGAGGTT
CTTGCGCTCCTGAAGGGCGGGCGCGGAAGTAAGAGCATCCTCAGGCGGTCTGTGACTGGCAGCG
AGGTCGAGAGGAGCCACCAGGCAGTGACCGCTTTGCTTCTGCAGCTCGGCTCAGCTCATTCCGT
TATCTCAGCCTTTGCAGTCTGCACAGAAGCTGACCAAGTTACCTTTGGGTCTTGAGACCTGGGA
GAGTGAGGCCCAAACTCGGGACCAACTCCTCATCTACCTTGCCCTCCCTCTCCTCCATCTCTTC
CTTTGCATGCACGAATCGCTTGCTCCTTTGGGCTGGCTTGCTCGGCTGTGCCTGGAGACTAAGT
TCGGGTCGGTAAAGGTAACTGTGGGAAAAGCGGCCCCCCAGTGGACAAAGGCGGAGGCAGGGAT
AGAGCAGGCCCCGCGGGCCCTGGGCGCTGAGCATAGGCAGTAGAGAAGGTGAGCCAGAAGAACA
GTACTGCGGATTTAGAAGGCACTGTGAAGGACTTGTTGCGCGATGGAAGAATCTGACTCCGAGA
AAAAGACGGAGAAAGAGAATGTGGGCCCAAAAGTGGAGCCTCCTCTAGGGGAGCCGGAAGGATC
GCTTGGGTGGGCAATGCCAAATGCAGCCATGAAGAAAAAGGTGCTGTTGATGGGTAAAAGTGGA
TCTGGTAAGACCAGCATGAGGTCTATTATCTTTGCAAATTATATTGCCAGAGACACACGTCGTC
TTGGTGCAACAATTGATGTAGAACATTCTCATGTTCGATTTCTGGGAAACCTGGTTTTGAACCT
GTGGGATTGTGGTGGACAAGACACCTTCATGGAAAATTACTTCACTAGCCAGCGTGACAACATC
TTCCGAAATGTGGAGGTTCTGATTTATGTCTTTGACGTGGAGAGCCGTGAACTCGAGAAAGACA
TGCACTACTATCAGTCATGCCTTGAGGCTATTCTGCAGAATTCCCCAGAAGCCAAAATCTTTTG
CTTGGTACACAAAATGGATTTGGTCCAGGAGGATCAGCGAGACTTGATTTTTAAAGAACGAGAA
GAAGACTTAAGGCGTTTATCGCGTCCGTTAGAATGTTCTTGTTTCCGAACATCTATCTGGGATG
AAACTCTGTATAAGGCTTGGTCCAGCATTGTTTATCAGCTGATTCCCAATGTTCAGCAACTGGA
AATGAACCTGCGCAATTTTGCTGAAATTATTGAGGCTGATGAAGTACTTCTGTTTGAGAGAGCT
ACCTTTCTGGTGATTTCTCACTATCAGTGTAAAGAACAGCGAGATGCCCACCGATTTGAGAAAA
TCAGCAACATTATTAAGCAGTTCAAGCTGAGCTGTAGCAAGCTGGCTGCCTCTTTCCAGAGTAT
GGAAGTCAGGAATTCTAACTTTGCTGCTTTCATTGACATATTCACATCCAACACTTACGTCATG
GTCGTGATGTCTGATCCATCCATTCCTTCTGCAGCTACTCTGATCAACATCCGCAATGCCAGAA
AACACTTTGAAAAGCTGGAGAGAGTGGATGGACCAAAACAGTGTCTTCTCATGCGCTAAACATT
GCCGAATATTGTTTCACACAAAATAATTGAAACACTGTTTCTTAATTTTATTGTATTCATATAT
GTAGGCTCTGAAATATTGTGATGCTCACTGCTTCTGTATTTCTTCTCTACTCTCCAGTCTTAAC
ATTTATCTTTGAATGCTATTTATTCAAATAGCTTGAGGAGTTAGAAGATGAGGTGTCTATGAAG
TTGATGTAACGTATACGTAGGCGATATATGTAAGTGTTCTGATAACATGATTCTAATGGTGTTT
TAAGTGTTCTGATAACCTGCTTTTAATAGTTGTGTATGCCAAAGTCTTTCCCAGAACCTCTTGT
ATTCACTATCAAATATATACATGTAAGTTTTAAGTATTACTGTTTTCTCAGCATGAATTAAAAA
TATTCCGTAACTCAACCAGGCAACGTAGCTCATGCCTGTGACCCCAGCAGTTGAGAAGCAGAGA
CAAGAGGATTGCTGCAAGTTTGAGGCCAGCCTGTCTACATAGGGAGGTCCAGGCCAAGTATATA
TCAAGATCTTGTTTCAAAAACAAGATACACACACACACACACACACACCACTTAACTTCGATGT
AAATAAACTTCTGCTGTTAGGGATTTCAGTGTCTGTGTTTCTTTTTCTTATATCTTGAACCTTT
CATTAAGATCAAGAAGTTTCATTTATGCTAGAAAATAGAACGTGCTTAAAATAGAGTTAATTAA
AGAATGGATTCAGATTTTAGCCTAAGTTCCAGGGAAGAGTTTAAATTTCTGATATCTGTGATAT
CTGAATTTTACAGTAAAAAGAAAAACACAAGAAGCTACTGAGCAGGATAATTATGTGACTTCAA
TGTTTAAAATGTAATTCATCTATACTGTATAGATTGACAACAGTTGGAGAAACTGTATTAATAA
TCCAGGCCTGATCTAGATTGAAAGTCTCCAGTTCTGGCGAGATGGCTCAGTGGGTAAAAACTCT
TACAGTCGGCCAGGTGAGCTGAGTTCGATTTCCACAAACTATAGAGTGGAAGGTAAAGACTGTT
TCTTGCAGGTTGCCCTGCGATCTTTACACATGTGCCCACATGTATACACAGAGAGAGACTGAAT
AAATAAAATGTTGAAAGATTAAAAATAGTTCTAAGAAGCAACTAGAGAATGAATGGATAGACCC
TGCAGAGAAAGTAAAATTTATGAGCTGAAAATTTTTGAGGTCCAACAGTGGTTACTTTTTATTT
ATATATTCAGTAACACCAAATGGGATGGACCTTAAAACATTAACTAGAATTGCTGTAGCTCAAA
CCTTTTCAGTTTCCATTAGCACAAGAACAGAACACAGACACATGTTTAGGGTTACAGAGCCCTC
CCTATATGTTCATCTCTTTGCTCTTGTACTTCGTGGTATAAAATGTCATCCCATGCCAAGTGTC
CTGATATATGCCTTTAGGCTACGTAGAGAGATGTCAACTTAAAAAATTTTAAAAATAATGAATA
AATAGAAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAACAACAAACGT
AAAAGAAATAACTTCCAGAATCAGTCTCACTCTATTTTATCTCGGTTCATTATTCCCAATTGAG
AAATAAGTAGTTTTTATTAAGTAGAAAATAACATGTTTCTAAGTACCCTATGATACATAGACTC
AATAGGACATCATGGGAGTAATTTTAGAAGCTCTATTCATGCACAGAAGAAATCTTCTAGGTAG
ATATTCCAGACTCTTCCTCATCAGTAAACTAAAACAACCAAATGAATAGAGATCTGTTCTGTGA
CTAATGAGAGTCATGCTTTAGCCTGTTCTCATCTTTAGTGCTTATGGTGGGATTTTGAAAGCTT
TCTTTAAGTGAATATAGATAAGACAATGAAAGCATGCATTTGGCAATGTGGATAAAAATAAAAA
GAAGAGATGTGAAAATGACCCAAATGAAGTGATGCTTTTTATACTAATATGTGAGTGGATGGGA
CAGTCGTTCTCCAATGTCAGTATATTCCACAGTCACTTGGAGATAGCTCATTAAAAAGCATTCT
TTGGGCCTAACATGGTTTAGCAGGTAAGAGCACCTGTTGCTTTTATACAGGATCCAGGTTTGGT
TCCAGTATTCATGTGGTGGTTTGTGACCATCTGTAAATTGAGTGCCGGGGGATCCAGCACCCCT
TTCTTGACCTCTGTACCAGCTGTATGTGGTATATATATGTGCACATTAACCTAAAATAAAAAAT
CGCAAAACAGA

hide sequence

RefSeq Acc Id:

XM_008773109 ⟹ XP_008771331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	21,560,313 - 21,610,428 (-)	NCBI
mRatBN7.2	X	18,184,619 - 18,234,333 (-)	NCBI
Rnor_6.0	X	19,085,913 - 19,135,049 (-)	NCBI

Sequence:

show sequence

GCCAATGGCGCGGAAATGAGAGCCCGAGCCACGTGATGGCGGGTGGCACTCTGGCTTTCCTAAA
GCAGTCTCTATGGTATTCTTCCAAGCAAACCCAGGGCCCCCCCAAAAGGGTAGCGGCACGTGAC
AGGCCCTGGGACTACGGCAGGTTCCCACGTGATCCTGGCCTGCAGTAGCGTGGTTGCAGTGAGG
TTCTTGCGCTCCTGAAGGGCGGGCGCGGAAGTAAGAGCATCCTCAGGCGGTCTGTGACTGGCAG
CGAGGTCGAGAGGAGCCACCAGGCAGTGACCGCTTTGCTTCTGCAGCTCGGCTCAGCTCATTCC
GTTATCTCAGCCTTTGCAGTCTGCACAGAAGCTGACCAAGTTACCTTTGGGTCTTGAGACCTGG
GAGAGTGAGGCCCAAACTCGGGACCAACTCCTCATCTACCTTGCCCTCCCTCTCCTCCATCTCT
TCCTTTGCATGCACGAATCGCTTGCTCCTTTGGGCTGGCTTGCTCGGCTGTGCCTGGAGACTAA
GTTCGGGTCGGTAAAGGTAACTGTGGGAAAAGCGGCCCCCCAGTGGACAAAGGCGGAGGCAGGG
ATAGAGCAGGCCCCGCGGGCCCTGGGCGCTGAGCATAGGCAGTAGAGAAGGTGAGCCAGAAGAA
CAGTACTGCGGATTTAGAAGGCACTGTGAAGGACTTGTTGCGCGATGGAAGAATCTGACTCCGA
GAAAAAGACGGAGAAAGAGAATGTGGGCCCAAAAGTGGAGCCTCCTCTAGGGGAGCCGGAAGGA
TCGCTTGGGTGGGCAATGCCAAATGCAGCCATGAAGAAAAAGGTGCTGTTGATGGGTAAAAGTG
GATCTGGTAAGACCAGCATGAGGTCTATTATCTTTGCAAATTATATTGCCAGAGACACACGTCG
TCTTGGTGCAACAATACTAGACCGTATACATAGTCTTCAAATTAATAGCAGTTTGAGCACCTAC
TCTCTCGTAGACTCTGTTGGAAATACAAAGACATTTGATGTAGAACATTCTCATGTTCGATTTC
TGGGAAACCTGGTTTTGAACCTGTGGGATTGTGGTGGACAAGACACCTTCATGGAAAATTACTT
CACTAGCCAGCGTGACAACATCTTCCGAAATGTGGAGGTTCTGATTTATGTCTTTGACGTGGAG
AGCCGTGAACTCGAGAAAGACATGCACTACTATCAGTCATGCCTTGAGGCTATTCTGCAGAATT
CCCCAGAAGCCAAAATCTTTTGCTTGGTACACAAAATGGATTTGGTCCAGGAGGATCAGCGAGA
CTTGATTTTTAAAGAACGAGAAGAAGACTTAAGGCGTTTATCGCGTCCGTTAGAATGTTCTTGT
TTCCGAACATCTATCTGGGATGAAACTCTGTATAAGGCTTGGTCCAGCATTGTTTATCAGCTGA
TTCCCAATGTTCAGCAACTGGAAATGAACCTGCGCAATTTTGCTGAAATTATTGAGGCTGATGA
AGTACTTCTGTTTGAGAGAGCTACCTTTCTGGTGATTTCTCACTATCAGTGTAAAGAACAGCGA
GATGCCCACCGATTTGAGAAAATCAGCAACATTATTAAGCAGTTCAAGCTGAGCTGTAGCAAGC
TGGCTGCCTCTTTCCAGAGTATGGAAGTCAGGAATTCTAACTTTGCTGCTTTCATTGACATATT
CACATCCAACACTTACGTCATGGTCGTGATGTCTGATCCATCCATTCCCTTCTAACATAAACTG
AAGACTAGCACTCTCCAAGAATCCTCCAGGCTTCAGCACCAGATTGGAACTGCTGCGACATCCA
GCCTTGTTGACTGAGCAACTACAGGATTCTCTATCTCTCCAGCATCCAGACAGCCACTGTTGGA
CTAACTGCCCCGTATCATGTAAGCCAATTTAATAAATCTCTGTTCACAATATATACTCATTCTA
TTGGTTCTGTTCTAGAGCAGTGGTTCTCCACCTTCTTAATGCTGTGACCCTTTAATACAG

hide sequence

RefSeq Acc Id:

XM_039099416 ⟹ XP_038955344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	21,560,313 - 21,610,432 (-)	NCBI
mRatBN7.2	X	18,184,619 - 18,234,333 (-)	NCBI

RefSeq Acc Id:

XM_063279757 ⟹ XP_063135827

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	21,560,313 - 21,610,529 (-)	NCBI

RefSeq Acc Id:

XM_063279758 ⟹ XP_063135828

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	21,560,313 - 21,610,529 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_446424	(Get FASTA)	NCBI Sequence Viewer
	XP_006256837	(Get FASTA)	NCBI Sequence Viewer
	XP_008771331	(Get FASTA)	NCBI Sequence Viewer
	XP_038955344	(Get FASTA)	NCBI Sequence Viewer
	XP_063135827	(Get FASTA)	NCBI Sequence Viewer
	XP_063135828	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH78760	(Get FASTA)	NCBI Sequence Viewer
	AAH87698	(Get FASTA)	NCBI Sequence Viewer
	EDL86360	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004235
	ENSRNOP00000004235.3
	ENSRNOP00000066990
	ENSRNOP00000077577
	ENSRNOP00000108946
GenBank Protein	Q63487	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446424 ⟸ NM_053972

- UniProtKB:

Q6AZ37 (UniProtKB/Swiss-Prot), Q63487 (UniProtKB/Swiss-Prot), A6KL60 (UniProtKB/TrEMBL), A0A8I5ZR61 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEESDSEKKTEKENVGPKVEPPLGEPEGSLGWAMPNAAMKKKVLLMGKSGSGKTSMRSIIFANY
IARDTRRLGATILDRIHSLQINSSLSTYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQD
TFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDL
VQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFA
EIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNF
AAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR

hide sequence

RefSeq Acc Id:	XP_008771331 ⟸ XM_008773109
- Peptide Label:	isoform X3
- UniProtKB:	A0A8L2QXU5 (UniProtKB/TrEMBL), A0A8I5Y9L7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEESDSEKKTEKENVGPKVEPPLGEPEGSLGWAMPNAAMKKKVLLMGKSGSGKTSMRSIIFANY IARDTRRLGATILDRIHSLQINSSLSTYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQD TFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDL VQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFA EIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNF AAFIDIFTSNTYVMVVMSDPSIPF hide sequence

RefSeq Acc Id:	XP_006256837 ⟸ XM_006256775
- Peptide Label:	isoform X2
- UniProtKB:	A6KL59 (UniProtKB/TrEMBL), A0A8I5ZR61 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEESDSEKKTEKENVGPKVEPPLGEPEGSLGWAMPNAAMKKKVLLMGKSGSGKTSMRSIIFANY IARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVE SRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSC FRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQR DAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATL INIRNARKHFEKLERVDGPKQCLLMR hide sequence

Ensembl Acc Id:

ENSRNOP00000004235 ⟸ ENSRNOT00000004235

Ensembl Acc Id:

ENSRNOP00000066990 ⟸ ENSRNOT00000075249

RefSeq Acc Id:	XP_038955344 ⟸ XM_039099416
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5Y9L7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000077577 ⟸ ENSRNOT00000117263

Ensembl Acc Id:

ENSRNOP00000080942 ⟸ ENSRNOT00000103425

RefSeq Acc Id:	XP_063135828 ⟸ XM_063279758
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5Y9L7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135827 ⟸ XM_063279757
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5Y9L7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000108946 ⟸ ENSRNOT00000126370

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63487-F1-model_v2	AlphaFold	Q63487	1-374	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619805	AgrOrtholog
BioCyc Gene	G2FUF-2831	BioCyc
Ensembl Genes	ENSRNOG00000003160	Ensembl
	ENSRNOG00000050535	Ensembl
	ENSRNOG00000062421	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000004235	ENTREZGENE
	ENSRNOT00000004235.7	UniProtKB/Swiss-Prot
	ENSRNOT00000075249	ENTREZGENE
	ENSRNOT00000117263	ENTREZGENE
	ENSRNOT00000126370	ENTREZGENE
Gene3D-CATH	3.30.450.190	UniProtKB/Swiss-Prot
	3.40.50.300	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7123902	IMAGE-MGC_LOAD
	IMAGE:7314028	IMAGE-MGC_LOAD
InterPro	Gtr1_RagA	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	RagA/B	UniProtKB/Swiss-Prot
KEGG Report	rno:117043	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105357	IMAGE-MGC_LOAD
	MGC:93266	IMAGE-MGC_LOAD
NCBI Gene	117043	ENTREZGENE
PANTHER	PTHR11259	UniProtKB/Swiss-Prot
	RAS-RELATED GTP-BINDING PROTEIN B	UniProtKB/Swiss-Prot
Pfam	Gtr1_RagA	UniProtKB/Swiss-Prot
PhenoGen	Rragb	PhenoGen
RatGTEx	ENSRNOG00000003160	RatGTEx
	ENSRNOG00000050535	RatGTEx
	ENSRNOG00000062421	RatGTEx
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	A0A8I5Y9L7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZR61	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QXU5	ENTREZGENE, UniProtKB/TrEMBL
	A6KL59	ENTREZGENE, UniProtKB/TrEMBL
	A6KL60	ENTREZGENE, UniProtKB/TrEMBL
	Q63487	ENTREZGENE
	Q6AZ37	ENTREZGENE
	RRAGB_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q6AZ37	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2025-02-03	Rragb	Ras-related GTP binding B	RragB	Ras-related GTP binding B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	RragB	Ras-related GTP binding B	Ragb	GTP-binding protein ragB	Symbol and Name updated	1299863	APPROVED
2002-08-07	Ragb	GTP-binding protein ragB			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_homology	along with Raga, may be mammalian homologs of the yeast protein Gtr1	633888

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - PID (archival)