H2bc1 (H2B clustered histone 1) - Rat Genome Database

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Gene: H2bc1 (H2B clustered histone 1) Rattus norvegicus
Analyze
Symbol: H2bc1
Name: H2B clustered histone 1
RGD ID: 3855
Description: Enables DNA binding activity. Predicted to be involved in nucleosome assembly; nucleosome disassembly; and sperm DNA condensation. Predicted to act upstream of or within several processes, including chromatin organization; mononuclear cell migration; and plasminogen activation. Predicted to be located in cell surface and female germ cell nucleus. Predicted to be part of nucleosome. Orthologous to human H2BC1 (H2B clustered histone 1); PARTICIPATES IN systemic lupus erythematosus pathway; INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ENSRNOG00000069905; Hist1h2ba; histone; histone 1, H2ba; histone cluster 1 H2B family member a; histone cluster 1, H2ba; histone H2B type 1-A; histone H2B, testis; Testis-specific histone 2b; testis-specific histone H2B; Th2b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81741,599,912 - 41,600,381 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1741,599,211 - 41,608,681 (+)EnsemblGRCr8
mRatBN7.21741,172,041 - 41,172,510 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,171,903 - 41,176,782 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1741,171,903 - 41,176,782 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1741,239,407 - 41,239,876 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01742,843,453 - 42,843,922 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01741,127,769 - 41,128,238 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01743,423,111 - 43,423,580 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,423,111 - 43,423,580 (+)Ensemblrn6Rnor6.0
Rnor_5.01745,279,949 - 45,280,418 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41748,290,185 - 48,290,654 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1740,803,657 - 40,804,126 (+)NCBICelera
RGSC_v3.11748,293,025 - 48,293,495 (+)NCBI
Cytogenetic Map17p11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell surface  (IEA,ISO)
chromosome  (IEA)
nucleosome  (IBA,IEA,ISO,ISS)
nucleus  (IBA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Presence of a bi-directional S phase-specific transcription regulatory element in the promoter shared by testis-specific TH2A and TH2B histone genes. Huh NE, etal., Nucleic Acids Res 1991 Jan 11;19(1):93-8.
3. Molecular cloning and differential expression of somatic and testis-specific H2B histone genes during rat spermatogenesis. Kim YJ, etal., Dev Biol 1987 Nov;124(1):23-34.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2725487   PMID:9040779   PMID:16283522   PMID:17261847   PMID:17690254   PMID:19135898   PMID:19346237   PMID:21630459   PMID:23884607   PMID:24506885   PMID:24699735   PMID:25252820  
PMID:28366643   PMID:31493790  


Genomics

Comparative Map Data
H2bc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81741,599,912 - 41,600,381 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1741,599,211 - 41,608,681 (+)EnsemblGRCr8
mRatBN7.21741,172,041 - 41,172,510 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,171,903 - 41,176,782 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1741,171,903 - 41,176,782 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1741,239,407 - 41,239,876 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01742,843,453 - 42,843,922 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01741,127,769 - 41,128,238 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01743,423,111 - 43,423,580 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,423,111 - 43,423,580 (+)Ensemblrn6Rnor6.0
Rnor_5.01745,279,949 - 45,280,418 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41748,290,185 - 48,290,654 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1740,803,657 - 40,804,126 (+)NCBICelera
RGSC_v3.11748,293,025 - 48,293,495 (+)NCBI
Cytogenetic Map17p11NCBI
H2BC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38625,726,777 - 25,727,345 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl625,726,777 - 25,727,345 (+)Ensemblhg38GRCh38
GRCh37625,727,005 - 25,727,573 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36625,835,116 - 25,835,552 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34625,835,115 - 25,835,552NCBI
Celera626,954,349 - 26,954,785 (+)NCBICelera
Cytogenetic Map6p22.2NCBI
HuRef625,670,119 - 25,670,555 (+)NCBIHuRef
CHM1_1625,729,344 - 25,729,780 (+)NCBICHM1_1
T2T-CHM13v2.0625,592,555 - 25,593,123 (+)NCBIT2T-CHM13v2.0
H2bc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391324,117,708 - 24,118,139 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1324,117,756 - 24,118,139 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381323,933,725 - 23,934,156 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1323,933,773 - 23,934,156 (-)Ensemblmm10GRCm38
MGSCv371324,025,642 - 24,026,025 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361323,941,238 - 23,941,621 (-)NCBIMGSCv36mm8
Celera1324,165,458 - 24,165,841 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map1310.0NCBI
LOC102030314
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554831,354,587 - 1,358,368 (-)NCBIChiLan1.0ChiLan1.0
LOC100979289
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2540,373,762 - 40,376,421 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1636,375,206 - 36,376,609 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0625,561,518 - 25,562,817 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1625,887,271 - 25,887,827 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl625,887,397 - 25,887,780 (+)EnsemblpanPan2panpan1.1
H2BC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13523,677,952 - 23,678,432 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3523,580,500 - 23,580,976 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03523,793,565 - 23,794,041 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3523,793,651 - 23,794,034 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13523,603,363 - 23,603,839 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03523,653,918 - 23,654,395 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03525,091,736 - 25,092,140 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101970778
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049461,902,475 - 1,905,102 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366711,716,778 - 1,717,161 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366711,716,773 - 1,719,319 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H2BC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,465,129 - 20,465,512 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1720,465,043 - 20,466,398 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2721,765,030 - 21,776,800 (+)NCBISscrofa10.2Sscrofa10.2susScr3
H2BC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11746,526,512 - 46,527,099 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1746,526,593 - 46,526,973 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604425,660,901 - 25,661,459 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in H2bc1
1 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000022630
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)173803135483031354Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172266079955604694Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172149899450592236Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)173803135483031354Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)173544694975762341Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)173803135483031354Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173803135483031354Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173604553781045537Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)173310464578104645Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173219953449497050Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173219953455604694Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)173310464578104645Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)173768787782687877Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
8 8 31 72 72 70 41 25 41 5 169 76 53 36 54 29 5 5

Sequence


Ensembl Acc Id: ENSRNOT00000022630   ⟹   ENSRNOP00000022630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,171,903 - 41,176,782 (+)Ensembl
Rnor_6.0 Ensembl1743,423,111 - 43,423,580 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000165789   ⟹   ENSRNOP00000107663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1741,599,211 - 41,608,681 (+)Ensembl
RefSeq Acc Id: NM_022643   ⟹   NP_072169
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,599,912 - 41,600,381 (+)NCBI
mRatBN7.21741,172,041 - 41,172,510 (+)NCBI
Rnor_6.01743,423,111 - 43,423,580 (+)NCBI
Rnor_5.01745,279,949 - 45,280,418 (+)NCBI
RGSC_v3.41748,290,185 - 48,290,654 (+)RGD
Celera1740,803,657 - 40,804,126 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_072169 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA74754 (Get FASTA)   NCBI Sequence Viewer  
  AAA74755 (Get FASTA)   NCBI Sequence Viewer  
  AAA74756 (Get FASTA)   NCBI Sequence Viewer  
  CAA42587 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000107663
GenBank Protein Q00729 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_072169   ⟸   NM_022643
- UniProtKB: A0A8L2QBI8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022630   ⟸   ENSRNOT00000022630
Ensembl Acc Id: ENSRNOP00000107663   ⟸   ENSRNOT00000165789

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q00729-F1-model_v2 AlphaFold Q00729 1-127 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700449
Promoter ID:EPDNEW_R10973
Type:single initiation site
Name:Hist1h2ba_1
Description:histone cluster 1 H2B family member a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01743,423,090 - 43,423,150EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3855 AgrOrtholog
BioCyc Gene G2FUF-9393 BioCyc
Ensembl Genes ENSRNOG00000016865 Ensembl
  ENSRNOG00000069905 Ensembl
  ENSRNOG00000084925 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000165789 ENTREZGENE
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot
InterPro Histone-fold UniProtKB/Swiss-Prot
  Histone_H2A/H2B/H3 UniProtKB/Swiss-Prot
  Histone_H2B UniProtKB/Swiss-Prot
  HISTONE_H2B_site UniProtKB/Swiss-Prot
KEGG Report rno:24829 UniProtKB/Swiss-Prot
NCBI Gene 24829 ENTREZGENE
PANTHER PTHR23428 UniProtKB/Swiss-Prot
Pfam Histone UniProtKB/Swiss-Prot
PhenoGen H2bc1 PhenoGen
PRINTS HISTONEH2B UniProtKB/Swiss-Prot
PROSITE HISTONE_H2B UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016865 RatGTEx
  ENSRNOG00000069905 RatGTEx
  ENSRNOG00000084925 RatGTEx
SMART H2B UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47113 UniProtKB/Swiss-Prot
UniProt A0A8L2QBI8 ENTREZGENE, UniProtKB/TrEMBL
  H2B1A_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q64677 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 H2bc1  H2B clustered histone 1  H2bc1  H2B clustered histone 1  Data merged from RGD:150340917 737654 PROVISIONAL
2022-01-06 H2bc1  H2B clustered histone 1  ENSRNOG00000069905    Symbol and/or name change 19259462 PROVISIONAL
2021-08-31 ENSRNOG00000069905        Symbol and Name status set to provisional 45752 PROVISIONAL
2019-09-11 H2bc1  H2B clustered histone 1  Hist1h2ba  histone cluster 1 H2B family member a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-10-12 Hist1h2ba  histone cluster 1 H2B family member a  Hist1h2ba  histone cluster 1, H2ba  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-07 Hist1h2ba  histone cluster 1, H2ba    histone 1, H2ba  Name updated 1299863 APPROVED
2006-03-30 Hist1h2ba  histone 1, H2ba    testis-specific histone 2b  Name updated 1299863 APPROVED
2004-09-10 Hist1h2ba  testis-specific histone 2b  Th2b    Symbol and Name updated 1299863 APPROVED
2003-04-09 Th2b  testis-specific histone 2b    Testis-specific histone 2b  Name updated 629478 APPROVED
2002-06-10 Th2b  Testis-specific histone 2b      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed only in the testis 634433