RT1-DOa (RT1 class II, locus DOa) - Rat Genome Database

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Advanced Search (OLGA)
Gene: RT1-DOa (RT1 class II, locus DOa) Rattus norvegicus
Analyze
Symbol: RT1-DOa
Name: RT1 class II, locus DOa
RGD ID: 3477
Description: Predicted to enable MHC class II protein complex binding activity and peptide antigen binding activity. Predicted to be involved in several processes, including antigen processing and presentation of exogenous peptide antigen via MHC class II; negative regulation of antigen processing and presentation of peptide antigen via MHC class II; and peptide antigen assembly with MHC class II protein complex. Predicted to act upstream of or within antigen processing and presentation and regulation of T cell differentiation. Predicted to be located in membrane. Predicted to be part of MHC class II protein complex. Predicted to be active in late endosome membrane and lysosomal membrane. Human ortholog(s) of this gene implicated in occupational asthma. Orthologous to human HLA-DOA (major histocompatibility complex, class II, DO alpha); PARTICIPATES IN allograft rejection pathway; antigen processing and presentation pathway; asthma pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 4,4'-sulfonyldiphenol; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: H2-Oa; histocompatibility 2, O region alpha locus
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,755,287 - 4,758,491 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl204,755,499 - 4,758,478 (-)EnsemblGRCr8
mRatBN7.2204,753,587 - 4,756,590 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,753,598 - 4,756,577 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx205,506,215 - 5,508,610 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,867,962 - 4,870,357 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,349,348 - 5,351,873 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,889,106 - 3,892,360 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,889,370 - 3,892,449 (+)Ensemblrn6Rnor6.0
Rnor_5.0205,968,563 - 5,971,753 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4204,890,410 - 4,894,048 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera206,354,703 - 6,357,121 (-)NCBICelera
RGSC_v3.1204,890,638 - 4,894,271 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. The major histocompatibility complex of the rat (Rattus norvegicus). Gunther E and Walter L, Immunogenetics 2001 Sep;53(7):520-42.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Genetic variants in the major histocompatibility complex class I and class II genes are associated with diisocyanate-induced Asthma. Yucesoy B, etal., J Occup Environ Med. 2014 Apr;56(4):382-7. doi: 10.1097/JOM.0000000000000138.
Additional References at PubMed
PMID:7607708   PMID:9492004   PMID:11069069   PMID:12477932   PMID:22733780  


Genomics

Comparative Map Data
RT1-DOa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,755,287 - 4,758,491 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl204,755,499 - 4,758,478 (-)EnsemblGRCr8
mRatBN7.2204,753,587 - 4,756,590 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,753,598 - 4,756,577 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx205,506,215 - 5,508,610 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,867,962 - 4,870,357 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,349,348 - 5,351,873 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,889,106 - 3,892,360 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,889,370 - 3,892,449 (+)Ensemblrn6Rnor6.0
Rnor_5.0205,968,563 - 5,971,753 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4204,890,410 - 4,894,048 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera206,354,703 - 6,357,121 (-)NCBICelera
RGSC_v3.1204,890,638 - 4,894,271 (-)NCBI
Cytogenetic Map20p12NCBI
HLA-DOA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,004,182 - 33,009,591 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,004,178 - 33,009,594 (-)Ensemblhg38GRCh38
GRCh37632,971,959 - 32,977,368 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,079,937 - 33,085,367 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34633,081,330 - 33,085,315NCBI
Celera634,520,840 - 34,526,270 (-)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,714,467 - 32,719,897 (-)NCBIHuRef
CHM1_1632,972,734 - 32,978,164 (-)NCBICHM1_1
T2T-CHM13v2.0632,825,532 - 32,830,941 (-)NCBIT2T-CHM13v2.0
H2-Oa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,311,353 - 34,314,286 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,311,314 - 34,314,208 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381734,092,379 - 34,095,234 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,092,340 - 34,095,234 (+)Ensemblmm10GRCm38
MGSCv371734,229,324 - 34,232,179 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361733,702,886 - 33,705,688 (+)NCBIMGSCv36mm8
Celera1736,839,367 - 36,842,221 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
LOC102025166
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,603,168 - 1,607,134 (-)Ensembl
ChiLan1.0NW_0049554371,603,395 - 1,606,800 (-)NCBIChiLan1.0ChiLan1.0
LOC100967723
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,479,615 - 47,485,045 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,351,225 - 43,356,655 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,573,975 - 32,579,398 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1633,689,171 - 33,694,590 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl633,689,171 - 33,694,576 (-)EnsemblpanPan2panpan1.1
DLA-DOA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,563,673 - 2,568,328 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,563,673 - 2,568,328 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha122,645,022 - 2,649,677 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0122,894,424 - 2,899,075 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl122,894,424 - 2,899,075 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,562,685 - 2,567,336 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,644,035 - 2,648,683 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,718,589 - 2,723,244 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101963482
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,169,344 - 38,173,988 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,787,492 - 25,790,950 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,786,322 - 25,790,881 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLA-DOA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl725,178,881 - 25,182,707 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1725,178,866 - 25,182,665 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2729,545,479 - 29,549,278 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MHC-DOA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,084,785 - 39,090,477 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1739,085,080 - 39,090,474 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604432,794,062 - 32,799,722 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101698840
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,725,986 - 23,727,765 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475423,725,903 - 23,729,446 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
LOC116887428
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1188,226,579 - 8,229,474 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in RT1-DOa
107 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:124
Interacting mature miRNAs:131
Transcripts:ENSRNOT00000036966
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7175096Tcs1T cell selection QTL 1T cell selection trait (VT:0004917)expression2047282825026446Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
RH94536  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,753,955 - 4,754,044 (-)MAPPERmRatBN7.2
Rnor_6.0203,891,903 - 3,891,991NCBIRnor6.0
Rnor_5.0205,971,296 - 5,971,384UniSTSRnor5.0
RGSC_v3.4204,890,239 - 4,890,327UniSTSRGSC3.4
Celera206,354,532 - 6,354,620UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 58 110 73 72 41 91 41 6 324 181 10 83 78 85 31 8 8

Sequence


Ensembl Acc Id: ENSRNOT00000036966   ⟹   ENSRNOP00000034452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,753,598 - 4,756,577 (-)Ensembl
Rnor_6.0 Ensembl203,889,370 - 3,892,360 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,890,657 - 3,891,355 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl203,889,425 - 3,892,449 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120328   ⟹   ENSRNOP00000098018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl204,755,499 - 4,758,478 (-)Ensembl
RefSeq Acc Id: NM_183051   ⟹   NP_898874
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,756,028 - 4,758,423 (-)NCBI
mRatBN7.2204,754,127 - 4,756,522 (-)NCBI
Rnor_6.0203,889,425 - 3,891,820 (+)NCBI
Rnor_5.0205,968,563 - 5,971,753 (+)NCBI
RGSC_v3.4204,890,410 - 4,894,048 (-)RGD
Celera206,354,703 - 6,357,121 (-)RGD
Sequence:
RefSeq Acc Id: XM_006255914   ⟹   XP_006255976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,755,296 - 4,758,491 (-)NCBI
mRatBN7.2204,753,587 - 4,756,590 (-)NCBI
Rnor_6.0203,889,109 - 3,892,360 (+)NCBI
Rnor_5.0205,968,563 - 5,971,753 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601546   ⟹   XP_017457035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,755,287 - 4,758,471 (-)NCBI
mRatBN7.2204,753,627 - 4,756,571 (-)NCBI
Rnor_6.0203,889,106 - 3,892,268 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_898874 (Get FASTA)   NCBI Sequence Viewer  
  XP_006255976 (Get FASTA)   NCBI Sequence Viewer  
  XP_017457035 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAA08164 (Get FASTA)   NCBI Sequence Viewer  
  CAE83936 (Get FASTA)   NCBI Sequence Viewer  
  EDL96818 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000098018
  ENSRNOP00000098018.2
RefSeq Acc Id: NP_898874   ⟸   NM_183051
- Peptide Label: precursor
- UniProtKB: Q6MGB0 (UniProtKB/TrEMBL),   A6JJF2 (UniProtKB/TrEMBL),   Q31289 (UniProtKB/TrEMBL),   F7F5V5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255976   ⟸   XM_006255914
- Peptide Label: isoform X1
- UniProtKB: Q6MGB0 (UniProtKB/TrEMBL),   A6JJF2 (UniProtKB/TrEMBL),   Q31289 (UniProtKB/TrEMBL),   F7F5V5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457035   ⟸   XM_017601546
- Peptide Label: isoform X2
- UniProtKB: Q31289 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000034452   ⟸   ENSRNOT00000036966
Ensembl Acc Id: ENSRNOP00000098018   ⟸   ENSRNOT00000120328
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MGB0-F1-model_v2 AlphaFold Q6MGB0 1-250 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701319
Promoter ID:EPDNEW_R11843
Type:single initiation site
Name:RT1-DOa_1
Description:RT1 class II, locus DOa
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0203,889,396 - 3,889,456EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3477 AgrOrtholog
BioCyc Gene G2FUF-4547 BioCyc
Ensembl Genes ENSRNOG00000026762 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000120328 ENTREZGENE
  ENSRNOT00000120328.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  Class II Histocompatibility Antigen, M Beta Chain, Chain B, domain 1 UniProtKB/TrEMBL
InterPro Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC/Immunoglobulin UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_II_a/b_N UniProtKB/TrEMBL
  MHC_II_a_N UniProtKB/TrEMBL
KEGG Report rno:24984 UniProtKB/TrEMBL
NCBI Gene 24984 ENTREZGENE
PANTHER HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DO ALPHA CHAIN UniProtKB/TrEMBL
  MHC CLASS II-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_II_alpha UniProtKB/TrEMBL
PhenoGen RT1-DOa PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026762 RatGTEx
SMART IGc1 UniProtKB/TrEMBL
  MHC_II_alpha UniProtKB/TrEMBL
Superfamily-SCOP MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A6JJF2 ENTREZGENE, UniProtKB/TrEMBL
  F7F5V5 ENTREZGENE, UniProtKB/TrEMBL
  Q31289 ENTREZGENE, UniProtKB/TrEMBL
  Q6MGB0 ENTREZGENE
UniProt Secondary Q6MGB0 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-09-11 RT1-DOa  RT1 class II, locus DOa  H2-Oa  histocompatibility 2, O region alpha locus  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-15 H2-Oa  histocompatibility 2, O region alpha locus  RT1-DOa  RT1 class II, locus DOa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-11 RT1-DOa  RT1 class II, locus DOa      Symbol and Name status set to approved 625702 APPROVED
2002-06-10 RT1-DOa  RT1 class II, locus DOa      Symbol and Name status set to approved 70586 APPROVED