Klrc2 (killer cell lectin like receptor C2) - Rat Genome Database

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Gene: Klrc2 (killer cell lectin like receptor C2) Rattus norvegicus
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Symbol: Klrc2
Name: killer cell lectin like receptor C2
RGD ID: 2977
Description: Predicted to enable MHC class I protein complex binding activity; activating MHC class Ib receptor activity; and protein antigen binding activity. Predicted to be involved in positive regulation of natural killer cell degranulation and stimulatory C-type lectin receptor signaling pathway. Predicted to act upstream of or within natural killer cell mediated immunity. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Orthologous to several human genes including KLRC2 (killer cell lectin like receptor C2); PARTICIPATES IN antigen processing and presentation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: killer cell lectin-like receptor subfamily C, member 2; Nkg2E; rNKG2C
RGD Orthologs
Human
Mouse
Dog
Green Monkey
Alliance Orthologs
More Info more info ...
Candidate Gene For: Oia7
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84164,808,722 - 164,819,865 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4164,808,722 - 164,819,865 (-)EnsemblGRCr8
mRatBN7.24163,122,700 - 163,133,843 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4163,122,704 - 163,133,843 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4169,357,513 - 169,368,656 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04165,140,472 - 165,151,615 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04163,774,520 - 163,785,663 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04163,433,993 - 163,445,136 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4163,416,351 - 163,445,302 (-)Ensemblrn6Rnor6.0
RGSC_v3.44166,956,614 - 166,967,757 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4151,800,881 - 151,811,777 (-)NCBICelera
RGSC_v3.14167,201,553 - 167,212,693 (-)NCBI
Cytogenetic Map4q42NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Two genes in the rat homologous to human NKG2. Berg SF, etal., Eur J Immunol 1998 Feb;28(2):444-50
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:14707119   PMID:18448674  


Genomics

Comparative Map Data
Klrc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84164,808,722 - 164,819,865 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4164,808,722 - 164,819,865 (-)EnsemblGRCr8
mRatBN7.24163,122,700 - 163,133,843 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4163,122,704 - 163,133,843 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4169,357,513 - 169,368,656 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04165,140,472 - 165,151,615 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04163,774,520 - 163,785,663 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04163,433,993 - 163,445,136 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4163,416,351 - 163,445,302 (-)Ensemblrn6Rnor6.0
RGSC_v3.44166,956,614 - 166,967,757 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4151,800,881 - 151,811,777 (-)NCBICelera
RGSC_v3.14167,201,553 - 167,212,693 (-)NCBI
Cytogenetic Map4q42NCBI
KLRC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381210,430,599 - 10,436,010 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1210,426,854 - 10,442,300 (-)Ensemblhg38GRCh38
GRCh371210,583,198 - 10,588,609 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,474,465 - 10,479,859 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341210,474,474 - 10,479,897NCBI
Celera1215,745,049 - 15,750,188 (-)NCBICelera
Cytogenetic Map12p13.2NCBI
HuRef1210,307,336 - 10,315,619 (-)NCBIHuRef
CHM1_11210,552,639 - 10,558,033 (-)NCBICHM1_1
Klrc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396129,626,565 - 129,637,700 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6129,624,459 - 129,637,652 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386129,649,602 - 129,660,737 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6129,647,496 - 129,660,689 (-)Ensemblmm10GRCm38
MGSCv376129,606,364 - 129,610,614 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366130,579,843 - 130,594,336 (-)NCBIMGSCv36mm8
MGSCv366129,615,230 - 129,626,382 (-)NCBIMGSCv36mm8
Cytogenetic Map6F3NCBI
cM Map663.44NCBI
LOC100683403
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12735,307,892 - 35,374,397 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2711,194,081 - 11,220,221 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02735,654,481 - 35,726,775 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.12735,538,140 - 35,606,718 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02735,578,454 - 35,636,153 (+)NCBIUNSW_CanFamBas_1.0
UNSW_CanFamBas_1.02735,484,257 - 35,530,625 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02710,772,959 - 10,835,787 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC103218582
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,266,581 - 10,277,175 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660892,348,100 - 2,353,908 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Klrc2
169 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:35
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000012743
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4149763204169799698Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4134199006168870974Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4148834094168870974Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
13 11 26 44 75 74 43 90 43 6 251 139 1 24 48 67 31

Sequence


Ensembl Acc Id: ENSRNOT00000079526   ⟹   ENSRNOP00000072505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4164,808,722 - 164,819,865 (-)Ensembl
mRatBN7.2 Ensembl4163,122,704 - 163,133,843 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080299   ⟹   ENSRNOP00000069325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4164,808,722 - 164,819,865 (-)Ensembl
mRatBN7.2 Ensembl4163,122,704 - 163,133,843 (-)Ensembl
RefSeq Acc Id: NM_019261   ⟹   NP_062134
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84164,808,722 - 164,819,865 (-)NCBI
mRatBN7.24163,122,700 - 163,133,843 (-)NCBI
Rnor_6.04163,433,993 - 163,445,136 (-)NCBI
RGSC_v3.44166,956,614 - 166,967,757 (-)RGD
Celera4151,800,881 - 151,811,777 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_062134 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC40049 (Get FASTA)   NCBI Sequence Viewer  
  EDM01714 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069325
  ENSRNOP00000069325.1
  ENSRNOP00000072505.2
RefSeq Acc Id: NP_062134   ⟸   NM_019261
- UniProtKB: O54871 (UniProtKB/TrEMBL),   A6IM75 (UniProtKB/TrEMBL),   A0A0G2K353 (UniProtKB/TrEMBL),   A0A0G2JV27 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069325   ⟸   ENSRNOT00000080299
Ensembl Acc Id: ENSRNOP00000072505   ⟸   ENSRNOT00000079526
Protein Domains
C-type lectin

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2977 AgrOrtholog
BioCyc Gene G2FUF-42768 BioCyc
Ensembl Genes ENSRNOG00000052467 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000079526.3 UniProtKB/TrEMBL
  ENSRNOT00000080299 ENTREZGENE
  ENSRNOT00000080299.3 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin UniProtKB/TrEMBL
  C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin_fold UniProtKB/TrEMBL
  NKG2/CD94_NK_receptors UniProtKB/TrEMBL
  NKR-like_CTLD UniProtKB/TrEMBL
KEGG Report rno:29684 UniProtKB/TrEMBL
NCBI Gene 29684 ENTREZGENE
PANTHER C-TYPE LECTIN PROTEINS UniProtKB/TrEMBL
  KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY C, MEMBER 2-RELATED UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PhenoGen Klrc2 PhenoGen
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000052467 RatGTEx
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP C-type_lectin_fold UniProtKB/TrEMBL
TIGR TC238454
UniProt A0A0G2JV27 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K353 ENTREZGENE, UniProtKB/TrEMBL
  A6IM75 ENTREZGENE, UniProtKB/TrEMBL
  O54871 ENTREZGENE
UniProt Secondary O54871 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-25 Klrc2  killer cell lectin like receptor C2  Klrc2  killer cell lectin-like receptor subfamily C, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Klrc2  killer cell lectin-like receptor subfamily C, member 2      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains a C-terminal domain homologous to the carbohydrate recognition domain (CRD) of C-type lectins 61084
gene_evolution contains a C-terminal domain homologous to the carbohydrate recognition domain (CRD) of C-type lectins  
gene_expression expressed in the natural killer (NK) cells 61084
gene_mapping maps to the rat NK gene complex 61084
gene_product member of the NKG2 multigene family 61084