H1f6 (H1.6 linker histone, cluster member) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: H1f6 (H1.6 linker histone, cluster member) Rattus norvegicus
Analyze
Symbol: H1f6
Name: H1.6 linker histone, cluster member
RGD ID: 2778
Description: Predicted to enable double-stranded DNA binding activity and nucleosomal DNA binding activity. Involved in spermatogenesis. Predicted to be located in condensed nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H1-6 (H1.6 linker histone, cluster member); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: H1 histone family member 3; H1 histone family member T (testis-specific); H1 histone family, member 3; H1 histone family, member T (testis-specific); H1-6; H1.3; H1D; H1f3; H1ft; H1s-4; H1t; Hist1h1t; histone 1 a family 3; histone 1 family 3; histone 1, family 3; histone 1, H1t; histone 1t; histone cluster 1 H1 family member t; histone cluster 1, H1t; histone H1t; Testis-specific histone 1; Testis-specific histone 1 probably same as Hh1tts; testis-specific histone 1, probably same as Hh1tts
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81741,855,216 - 41,855,960 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21741,427,365 - 41,428,109 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,427,323 - 41,428,119 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1741,503,845 - 41,504,589 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01743,107,898 - 43,108,642 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01741,386,612 - 41,387,356 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01743,675,190 - 43,675,934 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,675,190 - 43,675,934 (-)Ensemblrn6Rnor6.0
Rnor_5.01745,513,826 - 45,531,456 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41748,463,316 - 48,464,060 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1741,059,775 - 41,060,519 (-)NCBICelera
RGSC_v3.11748,466,156 - 48,466,901 (+)NCBI
Cytogenetic Map17p11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
nucleosome  (IEA)
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Isolation of the gene for the testis-specific H1 histone variant H1t. Cole KD, etal., J Biol Chem 1986 Jun 5;261(16):7178-83.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
9. Messenger RNA profiles in liver injury and stress: a comparison of lethal and nonlethal rat models. Tygstrup N, etal., Biochem Biophys Res Commun 2002 Jan 11;290(1):518-25.
10. H1t/GC-box and H1t/TE1 element are essential for promoter activity of the testis-specific histone H1t gene. Wilkerson DC, etal., Biol Reprod 2002 Oct;67(4):1157-64.
11. Protein-DNA interactions within the rat histone H4t promoter. Wolfe SA and Grimes SR, J Biol Chem 1991 Apr 5;266(10):6637-43.
Additional References at PubMed
PMID:2386482   PMID:3947637   PMID:9040779   PMID:15051954   PMID:15229132   PMID:15562002   PMID:15631990   PMID:15685642   PMID:16006555   PMID:16676351   PMID:17052712   PMID:18247329  
PMID:18283110   PMID:18316482   PMID:19043117   PMID:21630459   PMID:22871113  


Genomics

Comparative Map Data
H1f6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81741,855,216 - 41,855,960 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21741,427,365 - 41,428,109 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,427,323 - 41,428,119 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1741,503,845 - 41,504,589 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01743,107,898 - 43,108,642 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01741,386,612 - 41,387,356 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01743,675,190 - 43,675,934 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,675,190 - 43,675,934 (-)Ensemblrn6Rnor6.0
Rnor_5.01745,513,826 - 45,531,456 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41748,463,316 - 48,464,060 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1741,059,775 - 41,060,519 (-)NCBICelera
RGSC_v3.11748,466,156 - 48,466,901 (+)NCBI
Cytogenetic Map17p11NCBI
H1-6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38626,107,412 - 26,108,135 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl626,107,412 - 26,108,135 (-)Ensemblhg38GRCh38
GRCh37626,107,640 - 26,108,363 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36626,215,619 - 26,216,343 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34626,215,618 - 26,216,343NCBI
Celera627,336,922 - 27,337,646 (-)NCBICelera
Cytogenetic Map6p22.2NCBI
HuRef626,050,697 - 26,051,421 (-)NCBIHuRef
CHM1_1626,109,895 - 26,110,619 (-)NCBICHM1_1
T2T-CHM13v2.0625,975,560 - 25,976,283 (-)NCBIT2T-CHM13v2.0
H1f6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391323,879,794 - 23,880,528 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1323,879,797 - 23,880,708 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381323,695,811 - 23,696,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1323,695,814 - 23,696,725 (+)Ensemblmm10GRCm38
MGSCv371323,787,680 - 23,788,591 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361323,703,276 - 23,704,005 (+)NCBIMGSCv36mm8
Celera1323,927,130 - 23,928,038 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map139.88NCBI
H1-6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2540,752,425 - 40,758,889 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1636,753,861 - 36,758,721 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0625,941,055 - 25,943,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1626,600,402 - 26,601,119 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl626,600,454 - 26,601,083 (-)EnsemblpanPan2panpan1.1
H1-6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13524,046,374 - 24,065,892 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3524,044,188 - 24,047,810 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3523,922,755 - 23,944,390 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03524,159,384 - 24,181,022 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3524,162,252 - 24,162,890 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13523,975,584 - 23,997,213 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03524,026,653 - 24,031,602 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03525,459,273 - 25,480,911 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
H1-6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049461,664,332 - 1,666,678 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366711,955,327 - 1,955,962 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366711,954,740 - 1,956,298 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H1-6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,775,859 - 20,776,497 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1720,774,135 - 20,777,244 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
H1-6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11746,147,280 - 46,149,129 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1746,148,286 - 46,148,909 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604426,042,039 - 26,043,822 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
H1-6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11442,695,877 - 42,698,100 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in H1f6
2 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)173803135483031354Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172266079955604694Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172149899450592236Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)173803135483031354Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)173544694975762341Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)173803135483031354Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173803135483031354Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173604553781045537Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)173310464578104645Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173219953449497050Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173219953455604694Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)173310464578104645Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)173768787782687877Rat

Markers in Region
D17Mgh3  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81741,857,666 - 41,857,778 (+)Marker Load Pipeline
mRatBN7.21741,429,815 - 41,429,923 (+)MAPPERmRatBN7.2
Rnor_6.01743,677,641 - 43,677,748NCBIRnor6.0
Rnor_5.01745,531,845 - 45,531,952UniSTSRnor5.0
RGSC_v3.41748,461,501 - 48,461,609RGDRGSC3.4
RGSC_v3.41748,461,502 - 48,461,609UniSTSRGSC3.4
Celera1741,062,226 - 41,062,333UniSTS
RGSC_v3.11748,464,342 - 48,464,450RGD
Cytogenetic Map17p11UniSTS
D17Wox14  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81741,857,616 - 41,857,777 (+)Marker Load Pipeline
mRatBN7.21741,429,765 - 41,429,922 (+)MAPPERmRatBN7.2
Rnor_6.01743,677,591 - 43,677,747NCBIRnor6.0
Rnor_5.01745,531,795 - 45,531,951UniSTSRnor5.0
RGSC_v3.41748,461,503 - 48,461,659UniSTSRGSC3.4
Celera1741,062,176 - 41,062,332UniSTS
Cytogenetic Map17p11UniSTS
PMC123630P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01745,529,526 - 45,530,077NCBIRnor5.0
RGSC_v3.41748,463,377 - 48,463,927UniSTSRGSC3.4
Cytogenetic Map17p11UniSTS
UniSTS:491320  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21741,427,368 - 41,428,068 (+)MAPPERmRatBN7.2
Rnor_6.01743,675,194 - 43,675,893NCBIRnor6.0
Rnor_5.01745,529,398 - 45,530,097UniSTSRnor5.0
RGSC_v3.41748,463,357 - 48,464,056UniSTSRGSC3.4
Celera1741,059,779 - 41,060,478UniSTS
Cytogenetic Map17p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 11 63 141 84 83 52 59 52 6 302 153 9 118 74 89 31 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000081345   ⟹   ENSRNOP00000070024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,427,323 - 41,428,119 (-)Ensembl
Rnor_6.0 Ensembl1743,675,190 - 43,675,934 (-)Ensembl
RefSeq Acc Id: NM_012579   ⟹   NP_036711
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,855,216 - 41,855,960 (-)NCBI
mRatBN7.21741,427,365 - 41,428,109 (-)NCBI
Rnor_6.01743,675,190 - 43,675,934 (-)NCBI
Rnor_5.01745,513,826 - 45,531,456 (-)NCBI
RGSC_v3.41748,463,316 - 48,464,060 (+)RGD
Celera1741,059,775 - 41,060,519 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_036711 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41305 (Get FASTA)   NCBI Sequence Viewer  
  AAA41328 (Get FASTA)   NCBI Sequence Viewer  
  EDL86576 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070024.1
GenBank Protein P06349 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036711   ⟸   NM_012579
- UniProtKB: P06349 (UniProtKB/Swiss-Prot),   A6KLN1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070024   ⟸   ENSRNOT00000081345
Protein Domains
H15

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P06349-F1-model_v2 AlphaFold P06349 1-208 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700462
Promoter ID:EPDNEW_R10986
Type:multiple initiation site
Name:Hist1h1t_1
Description:histone cluster 1 H1 family member t
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01743,675,934 - 43,675,994EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2778 AgrOrtholog
BioCyc Gene G2FUF-9377 BioCyc
Ensembl Genes ENSRNOG00000061863 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000081345.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot
InterPro Histone_H1/H5_H15 UniProtKB/Swiss-Prot
  Histone_H5 UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot
  WH_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report rno:24438 UniProtKB/Swiss-Prot
NCBI Gene 24438 ENTREZGENE
Pfam Linker_histone UniProtKB/Swiss-Prot
PhenoGen H1f6 PhenoGen
PRINTS HISTONEH5 UniProtKB/Swiss-Prot
PROSITE H15 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000061863 RatGTEx
SMART H15 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot
TIGR TC201866
  TC219100
UniProt A6KLN1 ENTREZGENE, UniProtKB/TrEMBL
  H1T_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 H1f6  H1.6 linker histone, cluster member  Hist1h1t  histone cluster 1 H1 family member t  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-10-12 Hist1h1t  histone cluster 1 H1 family member t  Hist1h1t  histone cluster 1, H1t  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-07 Hist1h1t  histone cluster 1, H1t    histone 1, H1t  Name updated 1299863 APPROVED
2003-04-09 Hist1h1t  histone 1, H1t      Symbol and Name updated 629477 APPROVED
2003-03-13 Hist1h1t  histone 1, H1t  H1f3  H1 histone family, member 3  Data merged from RGD:67386 628472 PROVISIONAL
2002-06-10 H1t  Testis-specific histone 1      Symbol and Name status set to approved 70586 APPROVED
2002-06-10 H1f3  H1 histone family, member 3      Name updated 70584 APPROVED
2001-10-23 H1f3  histone 1, family 3      Name updated 68916 RESERVED

RGD Curation Notes
Note Type Note Reference
gene_expression induced expression during hepatocyte regeneration after certain types of liver damage 70249
gene_protein 207-amino acid protein 632861