Fkbp1a (FKBP prolyl isomerase 1A) - Rat Genome Database

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Gene: Fkbp1a (FKBP prolyl isomerase 1A) Rattus norvegicus
Analyze
Symbol: Fkbp1a
Name: FKBP prolyl isomerase 1A
RGD ID: 2617
Description: Enables several functions, including FK506 binding activity; Hsp70 protein binding activity; and type I transforming growth factor beta receptor binding activity. Involved in response to iron ion. Located in axon terminus. Biomarker of Parkinsonism. Orthologous to several human genes including FKBP1A (FKBP prolyl isomerase 1A); PARTICIPATES IN activin signaling pathway; mTOR signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 12 kDa FK506-binding protein; 12 kDa FKBP; FK506 binding protein 1a; FK506 binding protein 2; FK506 binding protein 2 (13 kDa); FK506-binding protein 1 (12kD); FK506-binding protein 1a; FKBP-12; FKBP-1A; FKBP12; Fkbp2; immunophilin FKBP12; MGC156543; peptidyl-prolyl cis-trans isomerase FKBP1A; PPIase FKBP1A; rotamase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83160,500,748 - 160,520,492 (+)NCBIGRCr8
mRatBN7.23140,040,359 - 140,060,107 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,040,278 - 140,060,743 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3143,944,928 - 143,964,668 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03152,528,701 - 152,548,443 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03150,269,170 - 150,288,910 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,042,944 - 147,062,725 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,042,944 - 147,062,724 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03153,399,455 - 153,418,857 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43141,861,237 - 141,880,797 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13141,766,809 - 141,786,369 (+)NCBI
Celera3138,799,643 - 138,819,482 (+)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Fkbp1aRatcongenital heart disease  ISOFkbp1a (Mus musculus)1580388 RGD 
Fkbp1aRatParkinsonism  IEP 2302074mRNA and protein:increased expression:brainRGD 
Object Symbol
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Original Reference(s)
Fkbp1aRatesophagus squamous cell carcinoma  ISOFKBP1A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21517111
Fkbp1aRatExperimental Liver Cirrhosis  ISOFKBP1A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
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Original Reference(s)
Fkbp1aRatBarth syndrome  ISSFkbp1a (Mus musculus)13592920OMIM:302060MouseDO 

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Original Reference(s)
Fkbp1aRat(1->4)-beta-D-glucan multiple interactionsISOFkbp1a (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of FKBP1A mRNACTDPMID:36331819
Fkbp1aRat1,2-dimethylhydrazine multiple interactionsISOFkbp1a (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of FKBP1A mRNACTDPMID:22206623
Fkbp1aRat1-naphthyl isothiocyanate decreases expressionEXP 64804641-Naphthylisothiocyanate results in decreased expression of FKBP1A mRNACTDPMID:25380136
Fkbp1aRat14-Deoxy-11,12-didehydroandrographolide decreases expressionISOFKBP1A (Homo sapiens)648046414-deoxy-11 and 12-didehydroandrographolide results in decreased expression of FKBP1A mRNACTDPMID:22101062
Fkbp1aRat17beta-estradiol multiple interactionsISOFKBP1A (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of FKBP1A mRNACTDPMID:30165855
Fkbp1aRat17beta-estradiol increases expressionISOFkbp1a (Mus musculus)6480464Estradiol results in increased expression of FKBP1A mRNACTDPMID:39298647
Fkbp1aRat1H-pyrazole increases expressionISOFkbp1a (Mus musculus)6480464pyrazole results in increased expression of FKBP1A mRNACTDPMID:17945193
Fkbp1aRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOFkbp1a (Mus musculus)6480464[2 more ...CTDPMID:25510870
Fkbp1aRat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOFkbp1a (Mus musculus)6480464[2 more ...CTDPMID:25510870
Fkbp1aRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOFkbp1a (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of FKBP1A mRNACTDPMID:16960034
Fkbp1aRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of FKBP1A mRNACTDPMID:34747641
Fkbp1aRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of FKBP1A mRNACTDPMID:16960034 and PMID:26232522
Fkbp1aRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of FKBP1A mRNACTDPMID:20959002
Fkbp1aRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOFkbp1a (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of FKBP1A mRNACTDPMID:21570461
Fkbp1aRat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of FKBP1A mRNACTDPMID:21346803
Fkbp1aRat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of FKBP1A mRNACTDPMID:21346803
Fkbp1aRat3,4-methylenedioxymethamphetamine increases expressionISOFkbp1a (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of FKBP1A mRNACTDPMID:20188158
Fkbp1aRat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOFKBP1A (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of FKBP1A mRNACTDPMID:28628672
Fkbp1aRat3H-1,2-dithiole-3-thione increases expressionEXP 64804641 and 2-dithiol-3-thione results in increased expression of FKBP1A mRNACTDPMID:19162173
Fkbp1aRat4,4'-sulfonyldiphenol increases expressionISOFkbp1a (Mus musculus)6480464bisphenol S results in increased expression of FKBP1A mRNACTDPMID:39298647

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Biological Process
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Original Reference(s)
Fkbp1aRatamyloid fibril formation involved_inISOFKBP1A (Homo sapiens)1624291 PMID:18346205RGDPMID:18346205
Fkbp1aRatcytokine-mediated signaling pathway acts_upstream_of_or_withinISOFkbp1a (Mus musculus)1624291MGI:2158807 PMID:14605212RGDPMID:14605212
Fkbp1aRatheart morphogenesis involved_inISOFkbp1a (Mus musculus)1624291 PMID:9461216RGDPMID:9461216
Fkbp1aRatheart trabecula formation involved_inISOFkbp1a (Mus musculus)1624291 PMID:9461216RGDPMID:9461216
Fkbp1aRatmuscle contraction acts_upstream_of_or_withinISOFkbp1a (Mus musculus)1624291MGI:2182095 more ...RGDPMID:15289441
Fkbp1aRatnegative regulation of activin receptor signaling pathway involved_inIBAPANTHER:PTN000054674 and UniProtKB:P629421600115GO_REF:0000033GO_CentralGO_REF:0000033
Fkbp1aRatnegative regulation of activin receptor signaling pathway involved_inISOFKBP1A (Homo sapiens)1624291 PMID:16720724RGDPMID:16720724
Fkbp1aRatnegative regulation of transforming growth factor beta receptor signaling pathway involved_inISOFKBP1A (Homo sapiens)1624291 PMID:11583628RGDPMID:11583628
Fkbp1aRatnegative regulation of transforming growth factor beta receptor signaling pathway involved_inIBAPANTHER:PTN000054674 and UniProtKB:P629421600115GO_REF:0000033GO_CentralGO_REF:0000033
Fkbp1aRatpositive regulation of canonical NF-kappaB signal transduction involved_inISOFKBP1A (Homo sapiens)9068941 PMID:12761501UniProtPMID:12761501
Fkbp1aRatregulation of amyloid precursor protein catabolic process involved_inISOFKBP1A (Homo sapiens)1624291UniProtKB:P05067 and PMID:24499793RGDPMID:24499793
Fkbp1aRatregulation of immune response involved_inISOFKBP1A (Homo sapiens)1624291 PMID:2477715RGDPMID:2477715
Fkbp1aRatregulation of protein localization involved_inISOFKBP1A (Homo sapiens)1624291UniProtKB:P05067 and PMID:24499793RGDPMID:24499793
Fkbp1aRatregulation of ryanodine-sensitive calcium-release channel activity involved_inISOFkbp1a (Mus musculus)1624291 PMID:9461216RGDPMID:9461216
Fkbp1aRatregulation of skeletal muscle contraction by regulation of release of sequestered calcium ion involved_inISOFKBP1A (Homo sapiens)1624291 PMID:7592869RGDPMID:7592869
Fkbp1aRatrelease of sequestered calcium ion into cytosol acts_upstream_of_or_withinISOFkbp1a (Mus musculus)1624291MGI:2182095 more ...RGDPMID:12704193 and PMID:15289441
Fkbp1aRatresponse to caffeine acts_upstream_of_or_withinISOFkbp1a (Mus musculus)1624291MGI:2182095 more ...RGDPMID:15289441
Fkbp1aRatresponse to iron ion  IEP 2302076 RGD 
Fkbp1aRatsupramolecular fiber organization involved_inISOFKBP1A (Homo sapiens)1624291 PMID:18346205RGDPMID:18346205
Fkbp1aRatT cell proliferation acts_upstream_of_or_withinISOFkbp1a (Mus musculus)1624291MGI:2158807 PMID:14605212RGDPMID:14605212
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Cellular Component
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Original Reference(s)
Fkbp1aRataxon terminus  IDA 1580386 RGD 
Fkbp1aRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Fkbp1aRatcytoplasm is_active_inIBAMGI:1336205 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Fkbp1aRatcytoplasm located_inISOFKBP1A (Homo sapiens)1624291 PMID:12443530RGDPMID:12443530
Fkbp1aRatcytoplasmic side of membrane located_inISSUniProtKB:P629431600115GO_REF:0000024UniProtGO_REF:0000024
Fkbp1aRatcytosol located_inISOFKBP1A (Homo sapiens)1624291 PMID:1701173RGDPMID:1701173
Fkbp1aRatcytosol located_inIEAUniProtKB-SubCell:SL-00911600115GO_REF:0000044UniProtGO_REF:0000044
Fkbp1aRatmembrane located_inISOFKBP1A (Homo sapiens)1624291 PMID:12443530RGDPMID:12443530
Fkbp1aRatmembrane located_inISOFkbp1a (Mus musculus)1624291 PMID:12704193RGDPMID:12704193
Fkbp1aRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Fkbp1aRatryanodine receptor complex part_ofISSUniProtKB:P629431600115GO_REF:0000024UniProtGO_REF:0000024
Fkbp1aRatsarcoplasmic reticulum located_inISSUniProtKB:P629431600115GO_REF:0000024UniProtGO_REF:0000024
Fkbp1aRatsarcoplasmic reticulum located_inIEAUniProtKB-KW:KW-07031600115GO_REF:0000043UniProtGO_REF:0000043
Fkbp1aRatsarcoplasmic reticulum located_inIEAUniProtKB-SubCell:SL-02391600115GO_REF:0000044UniProtGO_REF:0000044
Fkbp1aRatsarcoplasmic reticulum membrane is_active_inIBAMGI:1336205 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Fkbp1aRatsarcoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-02411600115GO_REF:0000044UniProtGO_REF:0000044
Fkbp1aRatsarcoplasmic reticulum membrane located_inISOFkbp1a (Mus musculus)1624291 PMID:14592808RGDPMID:14592808
Fkbp1aRatsynapse is_active_inISOFkbp1a (Mus musculus)1624291 PMID:24534009RGDPMID:24534009
Fkbp1aRatZ disc located_inISOFKBP1A (Homo sapiens)1624291 PMID:20431056RGDPMID:20431056
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Molecular Function
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Original Reference(s)
Fkbp1aRatactivin receptor binding enablesISOFKBP1A (Homo sapiens)1624291UniProtKB:P36896 and PMID:16720724RGDPMID:16720724
Fkbp1aRatcalcium channel regulator activity enablesISOFKBP1A (Homo sapiens)1624291 PMID:7592869RGDPMID:7592869
Fkbp1aRatenzyme binding  IPIPkm (Rattus norvegicus) and Eno1 (Rattus norvegicus)2302074 RGD 
Fkbp1aRatFK506 binding  IDA 61587 RGD 
Fkbp1aRatFK506 binding enablesISOFkbp1a (Mus musculus)1624291 PMID:1722474RGDPMID:1722474
Fkbp1aRatFK506 binding enablesISOFKBP1A (Homo sapiens)1624291 PMID:7592869 and PMID:9880681RGDPMID:7592869 and PMID:9880681
Fkbp1aRatHsp70 protein binding  IPIHspa8 (Rattus norvegicus)2302074 RGD 
Fkbp1aRatI-SMAD binding enablesISOFKBP1A (Homo sapiens)1624291UniProtKB:O15105 and PMID:16720724RGDPMID:16720724
Fkbp1aRatidentical protein binding enablesISOFkbp1a (Mus musculus)1624291PR:P26883 PMID:22750946RGDPMID:22750946
Fkbp1aRatisomerase activity enablesIEAUniProtKB-KW:KW-04131600115GO_REF:0000043UniProtGO_REF:0000043
Fkbp1aRatisomerase activity enablesIEAUniRule:UR0004137831600115GO_REF:0000104UniProtGO_REF:0000104
Fkbp1aRatpeptidyl-prolyl cis-trans isomerase activity enablesISOFKBP1A (Homo sapiens)1624291 PMID:1696686 more ...RGDPMID:1696686 more ...
Fkbp1aRatpeptidyl-prolyl cis-trans isomerase activity enablesIEAEC:5.2.1.81600115GO_REF:0000003UniProtGO_REF:0000003
Fkbp1aRatpeptidyl-prolyl cis-trans isomerase activity enablesIBACGD:CAL0000188340 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Fkbp1aRatpeptidyl-prolyl cis-trans isomerase activity enablesIEAInterPro:IPR001179 and InterPro:IPR0463571600115GO_REF:0000002InterProGO_REF:0000002
Fkbp1aRatpeptidyl-prolyl cis-trans isomerase activity enablesIEARHEA:162371600115GO_REF:0000116RHEAGO_REF:0000116
Fkbp1aRatpeptidyl-prolyl cis-trans isomerase activity enablesIEAUniProtKB-KW:KW-06971600115GO_REF:0000043UniProtGO_REF:0000043
Fkbp1aRatprotein binding  IPIPrdx6 (Rattus norvegicus)2302074 RGD 
Fkbp1aRatprotein binding enablesISOFKBP1A (Homo sapiens)1624291UniProtKB:A6NJ78-4 more ...RGDPMID:10025408 more ...
Fkbp1aRatprotein binding enablesISOFkbp1a (Mus musculus)1624291PR:E9PZQ0 more ...RGDPMID:12704193 more ...
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RGD Manual Annotations


  
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Original Reference(s)
Fkbp1aRatmTOR signaling pathway   ISOFKBP1A (Homo sapiens)11535033 RGD 
Fkbp1aRattransforming growth factor-beta Smad dependent signaling pathway   ISOFKBP1A (Homo sapiens)2298922 RGD 

Imported Annotations - PID (archival)

Object Symbol
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Original Reference(s)
Fkbp1aRatactivin signaling pathway  ISOFKBP1A (Homo sapiens)6484113 PIDPID:200029
Fkbp1aRattransforming growth factor-beta Smad dependent signaling pathway   ISOFKBP1A (Homo sapiens)6484113 PIDPID:200227

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Reference Title
Reference Citation
1. Perinatal iron deficiency results in altered developmental expression of genes mediating energy metabolism and neuronal morphogenesis in hippocampus. Carlson ES, etal., Hippocampus. 2007;17(8):679-91.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. mTOR signaling in growth control and disease. Laplante M and Sabatini DM, Cell. 2012 Apr 13;149(2):274-93. doi: 10.1016/j.cell.2012.03.017.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. Increased striatal mRNA and protein levels of the immunophilin FKBP-12 in experimental Parkinson's disease and identification of FKBP-12-binding proteins. Nilsson A, etal., J Proteome Res. 2007 Oct;6(10):3952-61. Epub 2007 Sep 18.
7. Cyclic ADP-ribose binds to FK506-binding protein 12.6 to release Ca2+ from islet microsomes. Noguchi N, etal., J Biol Chem 1997 Feb 7;272(6):3133-6.
8. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
9. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10. Rapamycin inhibits vascular smooth muscle cell migration. Poon M, etal., J Clin Invest 1996 Nov 15;98(10):2277-83.
11. GOA pipeline RGD automated data pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. FK506 binding protein 12 is expressed in rat penile innervation and upregulated after cavernous nerve injury. Sezen SF, etal., Int J Impot Res. 2002 Dec;14(6):506-12.
14. Mechanisms of TGF-beta signaling from cell membrane to the nucleus. Shi Y and Massague J, Cell. 2003 Jun 13;113(6):685-700.
15. Cardiac defects and altered ryanodine receptor function in mice lacking FKBP12. Shou W, etal., Nature. 1998 Jan 29;391(6666):489-92.
16. FK506 activates BMPR2, rescues endothelial dysfunction, and reverses pulmonary hypertension. Spiekerkoetter E, etal., J Clin Invest. 2013 Aug;123(8):3600-13. doi: 10.1172/JCI65592. Epub 2013 Jul 15.
17. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
18. Specific interaction of type I receptors of the TGF-beta family with the immunophilin FKBP-12. Wang T, etal., Science. 1994 Jul 29;265(5172):674-6.
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PMID:1696686   PMID:1701173   PMID:1722474   PMID:2477715   PMID:7592869   PMID:9880681   PMID:12443530   PMID:12704193   PMID:12761501   PMID:14592808   PMID:14605212   PMID:15199065  
PMID:15289441   PMID:15467718   PMID:15489334   PMID:16720724   PMID:17313373   PMID:17921453   PMID:17962721   PMID:18346205   PMID:18684528   PMID:19198614   PMID:20431056   PMID:21255728  
PMID:22363773   PMID:22750946   PMID:22871113   PMID:23376485   PMID:24499793   PMID:24534009   PMID:29229832  



Fkbp1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83160,500,748 - 160,520,492 (+)NCBIGRCr8
mRatBN7.23140,040,359 - 140,060,107 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,040,278 - 140,060,743 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3143,944,928 - 143,964,668 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03152,528,701 - 152,548,443 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03150,269,170 - 150,288,910 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,042,944 - 147,062,725 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,042,944 - 147,062,724 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03153,399,455 - 153,418,857 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43141,861,237 - 141,880,797 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13141,766,809 - 141,786,369 (+)NCBI
Celera3138,799,643 - 138,819,482 (+)NCBICelera
Cytogenetic Map3q41NCBI
FKBP1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38201,368,978 - 1,393,054 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl201,368,977 - 1,393,164 (-)EnsemblGRCh38hg38GRCh38
GRCh37201,349,622 - 1,373,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36201,297,622 - 1,321,745 (-)NCBINCBI36Build 36hg18NCBI36
Build 34201,300,375 - 1,321,745NCBI
Celera201,445,967 - 1,470,163 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef201,302,109 - 1,326,302 (-)NCBIHuRef
CHM1_1201,349,285 - 1,373,817 (-)NCBICHM1_1
T2T-CHM13v2.0201,418,161 - 1,442,241 (-)NCBIT2T-CHM13v2.0
Fkbp1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392151,384,403 - 151,403,611 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2151,384,403 - 151,403,612 (+)EnsemblGRCm39 Ensembl
GRCm382151,542,483 - 151,561,691 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2151,542,483 - 151,561,692 (+)EnsemblGRCm38mm10GRCm38
MGSCv372151,368,235 - 151,387,427 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362151,234,062 - 151,253,132 (+)NCBIMGSCv36mm8
Celera2157,359,901 - 157,379,075 (+)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.83NCBI
Fkbp1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955596580,106 - 603,255 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955596580,106 - 606,210 (-)NCBIChiLan1.0ChiLan1.0
FKBP1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2212,399,937 - 2,432,330 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1202,396,766 - 2,426,602 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0201,519,330 - 1,548,473 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1201,292,519 - 1,298,888 (-)NCBIpanpan1.1PanPan1.1panPan2
FKBP1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12419,618,581 - 19,643,685 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2419,618,558 - 19,643,046 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.02420,310,591 - 20,335,863 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2420,310,075 - 20,335,863 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12419,587,096 - 19,612,324 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02419,692,087 - 19,717,321 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02420,122,927 - 20,148,189 (+)NCBIUU_Cfam_GSD_1.0
Fkbp1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640168,873,992 - 168,880,432 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648517,305,376 - 17,311,797 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FKBP1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11733,910,047 - 33,935,212 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21738,470,202 - 38,495,226 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FKBP1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,170,816 - 55,195,380 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660871,575,983 - 1,600,558 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fkbp1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247412,666,636 - 2,692,938 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247412,669,909 - 2,692,959 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Fkbp1a
83 total Variants

Predicted Target Of
Summary Value
Count of predictions:708
Count of miRNA genes:273
Interacting mature miRNAs:335
Transcripts:ENSRNOT00000012608
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 31 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat

1 to 10 of 31 rows
RH141052  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23140,057,991 - 140,059,161 (+)MAPPERmRatBN7.2
mRatBN7.2178,470,296 - 78,470,512 (+)MAPPERmRatBN7.2
Rnor_6.0179,729,111 - 79,729,326NCBIRnor6.0
Rnor_6.03147,060,614 - 147,061,783NCBIRnor6.0
Rnor_5.03153,416,746 - 153,417,915UniSTSRnor5.0
Rnor_5.0180,991,514 - 80,991,729UniSTSRnor5.0
RGSC_v3.43141,878,686 - 141,879,855UniSTSRGSC3.4
RGSC_v3.4178,174,294 - 78,174,509UniSTSRGSC3.4
Celera172,937,410 - 72,937,625UniSTS
Celera3138,817,371 - 138,818,540UniSTS
RH 3.4 Map1791.5UniSTS
Cytogenetic Map3q41UniSTS
Cytogenetic Map1q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000012608   ⟹   ENSRNOP00000012608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,040,278 - 140,060,743 (+)Ensembl
Rnor_6.0 Ensembl3147,042,944 - 147,062,724 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105280   ⟹   ENSRNOP00000097913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3140,040,309 - 140,060,100 (+)Ensembl
RefSeq Acc Id: NM_013102   ⟹   NP_037234
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,500,748 - 160,520,492 (+)NCBI
mRatBN7.23140,040,359 - 140,060,103 (+)NCBI
Rnor_6.03147,042,944 - 147,062,725 (+)NCBI
Rnor_5.03153,399,455 - 153,418,857 (+)NCBI
RGSC_v3.43141,861,237 - 141,880,797 (+)RGD
Celera3138,799,643 - 138,819,482 (+)RGD
Sequence:
RefSeq Acc Id: XM_039104385   ⟹   XP_038960313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83160,503,464 - 160,520,492 (+)NCBI
mRatBN7.23140,043,135 - 140,060,107 (+)NCBI
RefSeq Acc Id: NP_037234   ⟸   NM_013102
- UniProtKB: A0JN04 (UniProtKB/Swiss-Prot),   P97533 (UniProtKB/Swiss-Prot),   Q62658 (UniProtKB/Swiss-Prot),   A6KHI5 (UniProtKB/TrEMBL),   A0A8L2UIH3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012608   ⟸   ENSRNOT00000012608
RefSeq Acc Id: XP_038960313   ⟸   XM_039104385
- Peptide Label: isoform X1
- UniProtKB: A6KHI7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097913   ⟸   ENSRNOT00000105280
PPIase FKBP-type

Name Modeler Protein Id AA Range Protein Structure
AF-Q62658-F1-model_v2 AlphaFold Q62658 1-108 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692523
Promoter ID:EPDNEW_R3048
Type:initiation region
Name:Fkbp1a_1
Description:FK506 binding protein 1a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03147,042,900 - 147,042,960EPDNEW


1 to 30 of 30 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-47311 BioCyc
Ensembl Genes ENSRNOG00000008822 Ensembl
Gene3D-CATH 3.10.50.40 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7103884 IMAGE-MGC_LOAD
  IMAGE:8363608 IMAGE-MGC_LOAD
InterPro FKBP-type_PPIase UniProtKB/Swiss-Prot
  PPIase_dom_sf UniProtKB/Swiss-Prot
  PPIase_FKBP_dom UniProtKB/Swiss-Prot
KEGG Report rno:25639 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156543 IMAGE-MGC_LOAD
  MGC:91525 IMAGE-MGC_LOAD
NCBI Gene 25639 ENTREZGENE
PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE UniProtKB/Swiss-Prot
  PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP1A-RELATED UniProtKB/Swiss-Prot
Pfam FKBP_C UniProtKB/Swiss-Prot
PhenoGen Fkbp1a PhenoGen
PROSITE FKBP_PPIASE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008822 RatGTEx
Superfamily-SCOP FKBP-like UniProtKB/Swiss-Prot
UniProt A0A8I6ANT3_RAT UniProtKB/TrEMBL
  A0A8L2UIH3 ENTREZGENE, UniProtKB/TrEMBL
  A0JN04 ENTREZGENE
  A6KHI5 ENTREZGENE, UniProtKB/TrEMBL
  A6KHI7 ENTREZGENE, UniProtKB/TrEMBL
  A6KHJ0_RAT UniProtKB/TrEMBL
  FKB1A_RAT UniProtKB/Swiss-Prot
  P97533 ENTREZGENE
  Q62658 ENTREZGENE
UniProt Secondary A0JN04 UniProtKB/Swiss-Prot
  P97533 UniProtKB/Swiss-Prot
1 to 30 of 30 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-11-09 Fkbp1a  FKBP prolyl isomerase 1A  Fkbp1a  FK506 binding protein 1a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-28 Fkbp1a  FK506-binding protein 1a  Fkbp2  FK506 binding protein 2  Data merged from RGD:2618 737654 APPROVED
2002-11-06 Fkbp1a  FK506-binding protein 1a    FK506-binding protein 1 (12kD)  Name updated 625702 APPROVED
2002-06-10 Fkbp1a  FK506-binding protein 1 (12kD)      Symbol and Name status set to approved 70586 APPROVED
2002-06-10 Fkbp2  FK506 binding protein 2      Name updated 70584 APPROVED

Note Type Note Reference
gene_process inhibits aortic vascular smooth muscle cell proliferation and migration 69838
gene_protein 108 amino acids 61587