Fgf17 (fibroblast growth factor 17) - Rat Genome Database

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Gene: Fgf17 (fibroblast growth factor 17) Rattus norvegicus
Analyze
Symbol: Fgf17
Name: fibroblast growth factor 17
RGD ID: 2607
Description: Predicted to enable growth factor activity; type 1 fibroblast growth factor receptor binding activity; and type 2 fibroblast growth factor receptor binding activity. Predicted to be involved in several processes, including fibroblast growth factor receptor signaling pathway; positive regulation of MAPK cascade; and positive regulation of cell population proliferation. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 20 with or without anosmia. Orthologous to human FGF17 (fibroblast growth factor 17); PARTICIPATES IN fibroblast growth factor signaling pathway; melanoma pathway; mitogen activated protein kinase signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrobenzenesulfonic acid; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FGF-17; Fgf6b; fibroblast growth factor 6b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81552,118,141 - 52,132,083 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1552,121,191 - 52,132,016 (-)EnsemblGRCr8
mRatBN7.21545,711,498 - 45,717,622 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1545,711,998 - 45,717,063 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1549,829,848 - 49,834,911 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,941,365 - 50,946,428 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01547,800,670 - 47,805,734 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01552,326,758 - 52,337,360 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1552,326,778 - 52,332,097 (-)Ensemblrn6Rnor6.0
Rnor_5.01556,049,808 - 56,055,493 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41551,038,529 - 51,044,118 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1545,390,057 - 45,395,484 (-)NCBICelera
RGSC_v3.11551,054,308 - 51,059,898 (-)NCBI
Cytogenetic Map15p11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Structure and expression of a novel fibroblast growth factor, FGF-17, preferentially expressed in the embryonic brain. Hoshikawa M, etal., Biochem Biophys Res Commun 1998 Mar 6;244(1):187-91.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10381577   PMID:16384934  


Genomics

Comparative Map Data
Fgf17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81552,118,141 - 52,132,083 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1552,121,191 - 52,132,016 (-)EnsemblGRCr8
mRatBN7.21545,711,498 - 45,717,622 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1545,711,998 - 45,717,063 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1549,829,848 - 49,834,911 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,941,365 - 50,946,428 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01547,800,670 - 47,805,734 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01552,326,758 - 52,337,360 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1552,326,778 - 52,332,097 (-)Ensemblrn6Rnor6.0
Rnor_5.01556,049,808 - 56,055,493 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41551,038,529 - 51,044,118 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1545,390,057 - 45,395,484 (-)NCBICelera
RGSC_v3.11551,054,308 - 51,059,898 (-)NCBI
Cytogenetic Map15p11NCBI
FGF17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,039,672 - 22,048,809 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,042,398 - 22,048,809 (+)Ensemblhg38GRCh38
GRCh37821,900,264 - 21,906,320 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36821,956,374 - 21,962,266 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34821,956,373 - 21,961,706NCBI
Celera820,862,491 - 20,868,383 (+)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef820,442,983 - 20,448,849 (+)NCBIHuRef
CHM1_1822,102,091 - 22,107,983 (+)NCBICHM1_1
T2T-CHM13v2.0822,313,628 - 22,322,765 (+)NCBIT2T-CHM13v2.0
Fgf17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,873,643 - 70,880,064 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,873,643 - 70,879,708 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381470,636,203 - 70,642,268 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,636,203 - 70,642,268 (-)Ensemblmm10GRCm38
MGSCv371471,036,012 - 71,042,075 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361469,371,285 - 69,377,348 (-)NCBIMGSCv36mm8
Celera1468,179,512 - 68,185,682 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.4NCBI
Fgf17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540345,544,114 - 45,548,659 (+)Ensembl
ChiLan1.0NW_00495540345,544,114 - 45,548,659 (+)NCBIChiLan1.0ChiLan1.0
FGF17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2740,538,730 - 40,550,535 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1816,263,865 - 16,275,668 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0821,284,451 - 21,293,633 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1818,224,453 - 18,233,537 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,224,461 - 18,233,537 (+)EnsemblpanPan2panpan1.1
FGF17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12535,194,400 - 35,204,787 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2535,194,394 - 35,199,792 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2535,783,130 - 35,793,596 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02535,405,126 - 35,415,594 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2535,405,682 - 35,410,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12535,350,337 - 35,360,800 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02535,204,933 - 35,215,394 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02535,360,428 - 35,370,894 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fgf17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494312,692,407 - 12,698,035 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365555,872,586 - 5,878,099 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365555,869,156 - 5,877,674 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,309,735 - 6,315,882 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1146,310,840 - 6,315,465 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2146,751,877 - 6,756,921 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FGF17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1820,111,858 - 20,119,785 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl820,116,561 - 20,119,746 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605222,117,095 - 22,119,760 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgf17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475817,634,994 - 17,640,560 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475817,634,606 - 17,640,590 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fgf17
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11253,711,494 - 53,716,553 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fgf17
53 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:115
Count of miRNA genes:91
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000017723
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)154367724488677244Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154046315285463152Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)154367724488677244Rat
2306968Anxrr23Anxiety related response QTL 234.83reflex trait (VT:0001961)amplitude of the acoustic startle response (CMO:0001520)154480677352597086Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
7411725Strs7Sensitivity to stroke QTL 73.8cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)154446544756583797Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)154367724488677244Rat

Markers in Region
Fgf17  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21545,712,071 - 45,712,271 (+)MAPPERmRatBN7.2
Rnor_6.01552,326,852 - 52,327,051NCBIRnor6.0
Rnor_5.01556,050,248 - 56,050,447UniSTSRnor5.0
RGSC_v3.41551,038,603 - 51,038,802UniSTSRGSC3.4
Celera1545,390,131 - 45,390,330UniSTS
Cytogenetic Map15p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
5 1 22 95 70 72 49 30 49 2 174 64 3 84 56 61 23 3 3

Sequence


Ensembl Acc Id: ENSRNOT00000017723   ⟹   ENSRNOP00000017723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1552,121,191 - 52,125,398 (-)Ensembl
mRatBN7.2 Ensembl1545,711,998 - 45,717,063 (-)Ensembl
Rnor_6.0 Ensembl1552,326,778 - 52,332,097 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102416   ⟹   ENSRNOP00000079339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1552,121,191 - 52,124,851 (-)Ensembl
mRatBN7.2 Ensembl1545,711,998 - 45,715,158 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000128915   ⟹   ENSRNOP00000098977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1552,121,191 - 52,127,313 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000168789   ⟹   ENSRNOP00000101324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1552,121,191 - 52,132,016 (-)Ensembl
RefSeq Acc Id: NM_001411948   ⟹   NP_001398877
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81552,121,191 - 52,127,313 (-)NCBI
mRatBN7.21545,711,498 - 45,717,622 (-)NCBI
RefSeq Acc Id: NM_019198   ⟹   NP_062071
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81552,121,191 - 52,127,313 (-)NCBI
mRatBN7.21545,711,498 - 45,717,622 (-)NCBI
Rnor_6.01552,326,778 - 52,332,097 (-)NCBI
Rnor_5.01556,049,808 - 56,055,493 (-)NCBI
RGSC_v3.41551,038,529 - 51,044,118 (-)RGD
Celera1545,390,057 - 45,395,484 (-)RGD
Sequence:
RefSeq Acc Id: XM_063274180   ⟹   XP_063130250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81552,118,141 - 52,132,083 (-)NCBI
RefSeq Acc Id: NP_062071   ⟸   NM_019198
- Peptide Label: isoform 1 precursor
- UniProtKB: P63076 (UniProtKB/Swiss-Prot),   A6HTM4 (UniProtKB/TrEMBL),   A0A8I5ZML6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017723   ⟸   ENSRNOT00000017723
Ensembl Acc Id: ENSRNOP00000079339   ⟸   ENSRNOT00000102416
RefSeq Acc Id: NP_001398877   ⟸   NM_001411948
- Peptide Label: isoform 2 precursor
- UniProtKB: A0A8I5ZML6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130250   ⟸   XM_063274180
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000101324   ⟸   ENSRNOT00000168789
Ensembl Acc Id: ENSRNOP00000098977   ⟸   ENSRNOT00000128915

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P63076-F1-model_v2 AlphaFold P63076 1-216 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2607 AgrOrtholog
BioCyc Gene G2FUF-13206 BioCyc
Ensembl Genes ENSRNOG00000012912 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000017723.3 UniProtKB/Swiss-Prot
  ENSRNOT00000128915 ENTREZGENE
  ENSRNOT00000168789 ENTREZGENE
Gene3D-CATH 2.80.10.50 UniProtKB/Swiss-Prot
InterPro Fibroblast_GF_fam UniProtKB/Swiss-Prot
  IL1/FGF UniProtKB/Swiss-Prot
KEGG Report rno:29368 UniProtKB/Swiss-Prot
NCBI Gene 29368 ENTREZGENE
PANTHER PTHR11486 UniProtKB/Swiss-Prot
Pfam FGF UniProtKB/Swiss-Prot
PhenoGen Fgf17 PhenoGen
PRINTS IL1HBGF UniProtKB/Swiss-Prot
PROSITE HBGF_FGF UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012912 RatGTEx
SMART FGF UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50353 UniProtKB/Swiss-Prot
UniProt A0A7U3JW84_RAT UniProtKB/TrEMBL
  A0A8I5ZML6 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L958_RAT UniProtKB/TrEMBL
  A6HTM4 ENTREZGENE, UniProtKB/TrEMBL
  FGF17_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary O70627 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Fgf17  fibroblast growth factor 17      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression present in neuroepithelia of the isthmus and septum of embryonic brain at E14.5 69833
gene_protein 216 amino acids 69833