FGF17 (fibroblast growth factor 17) - Rat Genome Database

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Gene: FGF17 (fibroblast growth factor 17) Homo sapiens
Analyze
Symbol: FGF17
Name: fibroblast growth factor 17
RGD ID: 733951
HGNC Page HGNC:3673
Description: Enables type 1 fibroblast growth factor receptor binding activity and type 2 fibroblast growth factor receptor binding activity. Predicted to be involved in several processes, including fibroblast growth factor receptor signaling pathway; positive regulation of cell population proliferation; and positive regulation of macromolecule metabolic process. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Implicated in hypogonadotropic hypogonadism 20 with or without anosmia.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: FGF-13; FGF-17; HH20
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,039,672 - 22,048,809 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,042,398 - 22,048,809 (+)EnsemblGRCh38hg38GRCh38
GRCh37821,900,264 - 21,906,320 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36821,956,374 - 21,962,266 (+)NCBINCBI36Build 36hg18NCBI36
Build 34821,956,373 - 21,961,706NCBI
Celera820,862,491 - 20,868,383 (+)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef820,442,983 - 20,448,849 (+)NCBIHuRef
CHM1_1822,102,091 - 22,107,983 (+)NCBICHM1_1
T2T-CHM13v2.0822,313,628 - 22,322,765 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
extracellular region  (IEA,NAS,TAS)
extracellular space  (IBA,IEA,TAS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal cardiovascular system morphology  (IAGP)
Abnormal morphology of female internal genitalia  (IAGP)
Abnormality of body height  (IAGP)
Abnormality of the dentition  (IAGP)
Abnormality of the sense of smell  (IAGP)
Abnormality of the voice  (IAGP)
Absence of pubertal development  (IAGP)
Absence of secondary sex characteristics  (IAGP)
Anosmia  (IAGP)
Anterior hypopituitarism  (IAGP)
Anxiety  (IAGP)
Ataxia  (IAGP)
Autosomal dominant inheritance  (IAGP)
Autosomal recessive inheritance  (IAGP)
Azoospermia  (IAGP)
Bimanual synkinesia  (IAGP)
Breast hypoplasia  (IAGP)
Camptodactyly  (IAGP)
Cleft palate  (IAGP)
Color vision defect  (IAGP)
Congenital sensorineural hearing impairment  (IAGP)
Cryptorchidism  (IAGP)
Decreased fertility  (IAGP)
Decreased serum testosterone concentration  (IAGP)
Decreased testicular size  (IAGP)
Delayed puberty  (IAGP)
Delayed skeletal maturation  (IAGP)
Depressed nasal bridge  (IAGP)
Depression  (IAGP)
Dysarthria  (IAGP)
Dyspareunia  (IAGP)
Erectile dysfunction  (IAGP)
Eunuchoid habitus  (IAGP)
Female hypogonadism  (IAGP)
Gait disturbance  (IAGP)
Generalized joint hypermobility  (IAGP)
Gynecomastia  (IAGP)
Hypertelorism  (IAGP)
Hypogonadism  (IAGP)
Hypogonadotropic hypogonadism  (IAGP)
Hypoplasia of penis  (IAGP)
Hypoplasia of the ovary  (IAGP)
Hypoplasia of the uterus  (IAGP)
Hyposmia  (IAGP)
Hypothalamic gonadotropin-releasing hormone deficiency  (IAGP)
Hypotonia  (IAGP)
Ichthyosis  (IAGP)
Impotence  (IAGP)
Increased female libido  (IAGP)
Infertility  (IAGP)
Juvenile onset  (IAGP)
Male hypogonadism  (IAGP)
Micropenis  (IAGP)
Muscle weakness  (IAGP)
Non-obstructive azoospermia  (IAGP)
Nystagmus  (IAGP)
Obesity  (IAGP)
Osteopenia  (IAGP)
Osteoporosis  (IAGP)
Paraplegia  (IAGP)
Pes cavus  (IAGP)
Pes planus  (IAGP)
Phenotypic abnormality  (IAGP)
Primary amenorrhea  (IAGP)
Ptosis  (IAGP)
Recurrent fractures  (IAGP)
Reduced bone mineral density  (IAGP)
Renal agenesis  (IAGP)
Secondary amenorrhea  (IAGP)
Seizure  (IAGP)
Sensorineural hearing impairment  (IAGP)
Skeletal dysplasia  (IAGP)
Sparse axillary hair  (IAGP)
Sparse body hair  (IAGP)
Sparse pubic hair  (IAGP)
Tooth agenesis  (IAGP)
Tremor  (IAGP)
Visual impairment  (IAGP)
Wide intermamillary distance  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Identification and characterization of a novel member of the fibroblast growth factor family. Greene JM, etal., Eur J Neurosci 1998 May;10(5):1911-25.
3. Structure and expression of a novel fibroblast growth factor, FGF-17, preferentially expressed in the embryonic brain. Hoshikawa M, etal., Biochem Biophys Res Commun 1998 Mar 6;244(1):187-91.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
Additional References at PubMed
PMID:1697263   PMID:8889548   PMID:9045692   PMID:9139660   PMID:10381577   PMID:10579907   PMID:10751172   PMID:11294897   PMID:12477932   PMID:12975309   PMID:14702039   PMID:15129425  
PMID:15199049   PMID:15489334   PMID:16384934   PMID:16597617   PMID:17133345   PMID:18199118   PMID:19122663   PMID:20301509   PMID:21048031   PMID:21319186   PMID:21484435   PMID:21873635  
PMID:23643382   PMID:25912421   PMID:30021884   PMID:32296183   PMID:32513696   PMID:33961781   PMID:34731724  


Genomics

Comparative Map Data
FGF17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,039,672 - 22,048,809 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,042,398 - 22,048,809 (+)EnsemblGRCh38hg38GRCh38
GRCh37821,900,264 - 21,906,320 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36821,956,374 - 21,962,266 (+)NCBINCBI36Build 36hg18NCBI36
Build 34821,956,373 - 21,961,706NCBI
Celera820,862,491 - 20,868,383 (+)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef820,442,983 - 20,448,849 (+)NCBIHuRef
CHM1_1822,102,091 - 22,107,983 (+)NCBICHM1_1
T2T-CHM13v2.0822,313,628 - 22,322,765 (+)NCBIT2T-CHM13v2.0
Fgf17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,873,643 - 70,880,064 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,873,643 - 70,879,708 (-)EnsemblGRCm39 Ensembl
GRCm381470,636,203 - 70,642,268 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,636,203 - 70,642,268 (-)EnsemblGRCm38mm10GRCm38
MGSCv371471,036,012 - 71,042,075 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361469,371,285 - 69,377,348 (-)NCBIMGSCv36mm8
Celera1468,179,512 - 68,185,682 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.4NCBI
Fgf17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81552,118,141 - 52,132,083 (-)NCBIGRCr8
mRatBN7.21545,711,498 - 45,717,622 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1545,711,998 - 45,717,063 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1549,829,848 - 49,834,911 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,941,365 - 50,946,428 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01547,800,670 - 47,805,734 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01552,326,758 - 52,337,360 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1552,326,778 - 52,332,097 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01556,049,808 - 56,055,493 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41551,038,529 - 51,044,118 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11551,054,308 - 51,059,898 (-)NCBI
Celera1545,390,057 - 45,395,484 (-)NCBICelera
Cytogenetic Map15p11NCBI
Fgf17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540345,544,114 - 45,548,659 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540345,544,114 - 45,548,659 (+)NCBIChiLan1.0ChiLan1.0
FGF17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2740,538,730 - 40,550,535 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1816,263,865 - 16,275,668 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0821,284,451 - 21,293,633 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1818,224,453 - 18,233,537 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,224,461 - 18,233,537 (+)Ensemblpanpan1.1panPan2
FGF17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12535,194,400 - 35,204,787 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2535,194,394 - 35,199,792 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,783,130 - 35,793,596 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02535,405,126 - 35,415,594 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2535,405,682 - 35,410,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12535,350,337 - 35,360,800 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02535,204,933 - 35,215,394 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02535,360,428 - 35,370,894 (-)NCBIUU_Cfam_GSD_1.0
Fgf17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494312,692,407 - 12,698,035 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365555,872,586 - 5,878,099 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365555,869,156 - 5,877,674 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,309,735 - 6,315,882 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,310,840 - 6,315,465 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2146,751,877 - 6,756,921 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FGF17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1820,111,858 - 20,119,785 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl820,116,561 - 20,119,746 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605222,117,095 - 22,119,760 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgf17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475817,634,994 - 17,640,560 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475817,634,606 - 17,640,590 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FGF17
45 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_003867.4(FGF17):c.323T>C (p.Ile108Thr) single nucleotide variant Hypogonadotropic hypogonadism 20 with or without anosmia [RCV000043598] Chr8:22046599 [GRCh38]
Chr8:21904110 [GRCh37]
Chr8:8p21.3
risk factor
NM_003867.4(FGF17):c.530G>A (p.Arg177His) single nucleotide variant Hypogonadotropic hypogonadism 20 without anosmia [RCV000043599] Chr8:22048128 [GRCh38]
Chr8:21905639 [GRCh37]
Chr8:8p21.3
pathogenic
NM_003867.4(FGF17):c.560A>G (p.Asn187Ser) single nucleotide variant Hypogonadotropic hypogonadism 20 with or without anosmia [RCV000043600] Chr8:22048158 [GRCh38]
Chr8:21905669 [GRCh37]
Chr8:8p21.3
pathogenic
GRCh38/hg38 8p23.1-11.21(chr8:12609975-42085703)x3 copy number gain See cases [RCV000050294] Chr8:12609975..42085703 [GRCh38]
Chr8:12467484..41943221 [GRCh37]
Chr8:12511855..42062378 [NCBI36]
Chr8:8p23.1-11.21
pathogenic
GRCh38/hg38 8p23.3-21.1(chr8:2475295-27504279)x1 copy number loss See cases [RCV000050297] Chr8:2475295..27504279 [GRCh38]
Chr8:2292235..27361796 [GRCh37]
Chr8:2121457..27417713 [NCBI36]
Chr8:8p23.3-21.1
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12728904-43673207)x3 copy number gain See cases [RCV000050912] Chr8:12728904..43673207 [GRCh38]
Chr8:12586413..43528350 [GRCh37]
Chr8:12630784..43647507 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.1-12(chr8:12383584-36370018)x3 copy number gain See cases [RCV000051145] Chr8:12383584..36370018 [GRCh38]
Chr8:12241093..36227536 [GRCh37]
Chr8:12285464..36347088 [NCBI36]
Chr8:8p23.1-12
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.1-11.21(chr8:12728904-41928741)x3 copy number gain See cases [RCV000051110] Chr8:12728904..41928741 [GRCh38]
Chr8:12586413..41786259 [GRCh37]
Chr8:12630784..41905416 [NCBI36]
Chr8:8p23.1-11.21
pathogenic
GRCh38/hg38 8p23.1-11.23(chr8:12609975-37892000)x3 copy number gain See cases [RCV000053629] Chr8:12609975..37892000 [GRCh38]
Chr8:12467484..37749518 [GRCh37]
Chr8:12511855..37868676 [NCBI36]
Chr8:8p23.1-11.23
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12609975-43336172)x3 copy number gain See cases [RCV000053630] Chr8:12609975..43336172 [GRCh38]
Chr8:12467484..43191315 [GRCh37]
Chr8:12511855..43310472 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12609975-43255410)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053631]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053631]|See cases [RCV000053631] Chr8:12609975..43255410 [GRCh38]
Chr8:12467484..43110553 [GRCh37]
Chr8:12511855..43229710 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12750796-43532444)x3 copy number gain See cases [RCV000053632] Chr8:12750796..43532444 [GRCh38]
Chr8:12608305..43387587 [GRCh37]
Chr8:12652676..43506744 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.1-12(chr8:12750796-29445409)x3 copy number gain See cases [RCV000053633] Chr8:12750796..29445409 [GRCh38]
Chr8:12608305..29302926 [GRCh37]
Chr8:12652676..29358845 [NCBI36]
Chr8:8p23.1-12
pathogenic
GRCh38/hg38 8p22-q11.21(chr8:14940110-47929925)x3 copy number gain See cases [RCV000053635] Chr8:14940110..47929925 [GRCh38]
Chr8:14797619..48842485 [GRCh37]
Chr8:14841990..49005038 [NCBI36]
Chr8:8p22-q11.21
pathogenic
GRCh38/hg38 8p21.3(chr8:21654619-23001935)x3 copy number gain See cases [RCV000053636] Chr8:21654619..23001935 [GRCh38]
Chr8:21512131..22859448 [GRCh37]
Chr8:21556411..22915393 [NCBI36]
Chr8:8p21.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] Chr8:244417..145054775 [GRCh38]
Chr8:194417..146280161 [GRCh37]
Chr8:184417..146250965 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-12(chr8:96310-30614703)x3 copy number gain See cases [RCV000053599] Chr8:96310..30614703 [GRCh38]
Chr8:46310..30472220 [GRCh37]
Chr8:36310..30591762 [NCBI36]
Chr8:8p23.3-12
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p21.3(chr8:21482945-22853239)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054236]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054236]|See cases [RCV000054236] Chr8:21482945..22853239 [GRCh38]
Chr8:21340456..22710752 [GRCh37]
Chr8:21384736..22766697 [NCBI36]
Chr8:8p21.3
pathogenic
GRCh37/hg19 8p23.3-11.1(chr8:176814-43396776) copy number gain Abnormal fetal cardiovascular morphology [RCV001291977] Chr8:176814..43396776 [GRCh37]
Chr8:8p23.3-11.1
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12609975-43673207)x3 copy number gain See cases [RCV000135786] Chr8:12609975..43673207 [GRCh38]
Chr8:12467484..43528350 [GRCh37]
Chr8:12511855..43647507 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12383584-43673207)x3 copy number gain See cases [RCV000135566] Chr8:12383584..43673207 [GRCh38]
Chr8:12241093..43528350 [GRCh37]
Chr8:12285464..43647507 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.1-11.21(chr8:12728904-40169194)x3 copy number gain See cases [RCV000136516] Chr8:12728904..40169194 [GRCh38]
Chr8:12586413..40026713 [GRCh37]
Chr8:12630784..40145870 [NCBI36]
Chr8:8p23.1-11.21
pathogenic
GRCh38/hg38 8p23.3-21.2(chr8:241605-24656971)x3 copy number gain See cases [RCV000136026] Chr8:241605..24656971 [GRCh38]
Chr8:191605..24514484 [GRCh37]
Chr8:181605..24570374 [NCBI36]
Chr8:8p23.3-21.2
pathogenic
GRCh38/hg38 8p23.3-21.3(chr8:241530-23198398)x3 copy number gain See cases [RCV000135967] Chr8:241530..23198398 [GRCh38]
Chr8:191530..23055911 [GRCh37]
Chr8:181530..23111856 [NCBI36]
Chr8:8p23.3-21.3
pathogenic
GRCh38/hg38 8p23.1-12(chr8:12725750-30180521)x3 copy number gain See cases [RCV000136825] Chr8:12725750..30180521 [GRCh38]
Chr8:12583259..30038037 [GRCh37]
Chr8:12627630..30157579 [NCBI36]
Chr8:8p23.1-12
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12182421-43673207)x3 copy number gain See cases [RCV000137249] Chr8:12182421..43673207 [GRCh38]
Chr8:12039930..43528350 [GRCh37]
Chr8:12077339..43647507 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.1-12(chr8:12698495-35476082)x3 copy number gain See cases [RCV000138058] Chr8:12698495..35476082 [GRCh38]
Chr8:12556004..35333600 [GRCh37]
Chr8:12600375..35453142 [NCBI36]
Chr8:8p23.1-12
pathogenic
GRCh38/hg38 8p23.3-11.23(chr8:226452-38021728)x3 copy number gain See cases [RCV000137807] Chr8:226452..38021728 [GRCh38]
Chr8:176452..37879246 [GRCh37]
Chr8:166452..37998403 [NCBI36]
Chr8:8p23.3-11.23
pathogenic|likely pathogenic
GRCh38/hg38 8p23.3-12(chr8:241605-31091074)x3 copy number gain See cases [RCV000138831] Chr8:241605..31091074 [GRCh38]
Chr8:191605..30948590 [GRCh37]
Chr8:181605..31068132 [NCBI36]
Chr8:8p23.3-12
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.1-21.1(chr8:12382844-28625564)x3 copy number gain See cases [RCV000138244] Chr8:12382844..28625564 [GRCh38]
Chr8:12240353..28483081 [GRCh37]
Chr8:12284724..28539000 [NCBI36]
Chr8:8p23.1-21.1
pathogenic
GRCh38/hg38 8p23.1-11.22(chr8:7141697-38695546)x3 copy number gain See cases [RCV000139891] Chr8:7141697..38695546 [GRCh38]
Chr8:6999219..38553064 [GRCh37]
Chr8:6986629..38672221 [NCBI36]
Chr8:8p23.1-11.22
pathogenic
GRCh38/hg38 8p23.1-11.22(chr8:12729023-39235934)x3 copy number gain See cases [RCV000139770] Chr8:12729023..39235934 [GRCh38]
Chr8:12586532..39093453 [GRCh37]
Chr8:12630903..39212610 [NCBI36]
Chr8:8p23.1-11.22
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12646123-43686843)x3 copy number gain See cases [RCV000139796] Chr8:12646123..43686843 [GRCh38]
Chr8:12503632..43541986 [GRCh37]
Chr8:12548003..43661143 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.1-11.23(chr8:11851113-37216333)x3 copy number gain See cases [RCV000139549] Chr8:11851113..37216333 [GRCh38]
Chr8:11708622..37073851 [GRCh37]
Chr8:11746031..37193009 [NCBI36]
Chr8:8p23.1-11.23
pathogenic
GRCh38/hg38 8p23.3-12(chr8:226452-34491890)x3 copy number gain See cases [RCV000141410] Chr8:226452..34491890 [GRCh38]
Chr8:176452..34349408 [GRCh37]
Chr8:166452..34468950 [NCBI36]
Chr8:8p23.3-12
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 copy number gain See cases [RCV000142021] Chr8:21291522..145070385 [GRCh38]
Chr8:21149033..146295771 [GRCh37]
Chr8:21193313..146266575 [NCBI36]
Chr8:8p21.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.1-12(chr8:12383584-29033946)x1 copy number loss See cases [RCV000142516] Chr8:12383584..29033946 [GRCh38]
Chr8:12241093..28891463 [GRCh37]
Chr8:12285464..28947382 [NCBI36]
Chr8:8p23.1-12
pathogenic
GRCh38/hg38 8p22-12(chr8:18972996-33619264)x1 copy number loss See cases [RCV000142747] Chr8:18972996..33619264 [GRCh38]
Chr8:18830506..33476782 [GRCh37]
Chr8:18874786..33596324 [NCBI36]
Chr8:8p22-12
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000148092] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.1-11.21(chr8:12633490-40685533)x3 copy number gain See cases [RCV000143508] Chr8:12633490..40685533 [GRCh38]
Chr8:12490999..40543052 [GRCh37]
Chr8:12535370..40662209 [NCBI36]
Chr8:8p23.1-11.21
pathogenic
GRCh38/hg38 8p23.1-11.21(chr8:12609975-42085703)x3 copy number gain See cases [RCV000148249] Chr8:12609975..42085703 [GRCh38]
Chr8:12467484..41943221 [GRCh37]
Chr8:12511855..42062378 [NCBI36]
Chr8:8p23.1-11.21
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12728904-43673207)x3 copy number gain See cases [RCV000148237] Chr8:12728904..43673207 [GRCh38]
Chr8:12586413..43528350 [GRCh37]
Chr8:12630784..43647507 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.2-21.1(chr8:2475295-27504279)x1 copy number loss See cases [RCV000148252] Chr8:2475295..27504279 [GRCh38]
Chr8:2292235..27361796 [GRCh37]
Chr8:2121457..27417713 [NCBI36]
Chr8:8p23.2-21.1
pathogenic
GRCh37/hg19 8p21.3-12(chr8:20478546-28986438)x3 copy number gain See cases [RCV000203434] Chr8:20478546..28986438 [GRCh37]
Chr8:8p21.3-12
pathogenic
GRCh37/hg19 8p23.1-11.22(chr8:12528482-39593802)x3 copy number gain See cases [RCV000511325] Chr8:12528482..39593802 [GRCh37]
Chr8:8p23.1-11.22
pathogenic
GRCh37/hg19 8p23.1-21.2(chr8:12580132-26774307)x3 copy number gain See cases [RCV000239945] Chr8:12580132..26774307 [GRCh37]
Chr8:8p23.1-21.2
pathogenic
Single allele complex 8p inverted duplication/deletion syndrome [RCV002280753] Chr8:158048..43019304 [GRCh37]
Chr8:8p23.3-11.21
pathogenic
GRCh37/hg19 8p23.3-12(chr8:158048-30262760)x3 copy number gain See cases [RCV000449225] Chr8:158048..30262760 [GRCh37]
Chr8:8p23.3-12
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158991-146280828)x3 copy number gain See cases [RCV000447507] Chr8:158991..146280828 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p22-21.2(chr8:13091530-24483615) copy number loss See cases [RCV000447428] Chr8:13091530..24483615 [GRCh37]
Chr8:8p22-21.2
pathogenic
GRCh37/hg19 8p23.3-11.1(chr8:158048-43786723)x3 copy number gain See cases [RCV000447909] Chr8:158048..43786723 [GRCh37]
Chr8:8p23.3-11.1
pathogenic
GRCh37/hg19 8p23.1-11.1(chr8:12580132-43388233)x3 copy number gain See cases [RCV000447913] Chr8:12580132..43388233 [GRCh37]
Chr8:8p23.1-11.1
pathogenic
GRCh37/hg19 8p21.3(chr8:21521340-22492009)x4 copy number gain See cases [RCV000510404] Chr8:21521340..22492009 [GRCh37]
Chr8:8p21.3
uncertain significance
GRCh37/hg19 8p22-12(chr8:16992973-32612724)x1 copy number loss not provided [RCV000509389] Chr8:16992973..32612724 [GRCh37]
Chr8:8p22-12
not provided
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771) copy number gain See cases [RCV000510234] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.1-12(chr8:12528482-33684786)x3 copy number gain See cases [RCV000510571] Chr8:12528482..33684786 [GRCh37]
Chr8:8p23.1-12
pathogenic
GRCh37/hg19 8p23.1-11.1(chr8:11935023-43824035)x3 copy number gain See cases [RCV000511028] Chr8:11935023..43824035 [GRCh37]
Chr8:8p23.1-11.1
pathogenic
GRCh37/hg19 8p23.1-12(chr8:11945855-34875355)x3 copy number gain See cases [RCV000510899] Chr8:11945855..34875355 [GRCh37]
Chr8:8p23.1-12
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771)x3 copy number gain See cases [RCV000511095] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
Single allele duplication not provided [RCV000768452] Chr8:12546855..35816855 [GRCh37]
Chr8:8p23.1-12
likely pathogenic
GRCh37/hg19 8p23.1-21.2(chr8:12580104-25947329) copy number gain Autism [RCV000626542] Chr8:12580104..25947329 [GRCh37]
Chr8:8p23.1-21.2
pathogenic
GRCh37/hg19 8p23.1-q24.3(chr8:12490999-146295771)x3 copy number gain See cases [RCV000512169] Chr8:12490999..146295771 [GRCh37]
Chr8:8p23.1-q24.3
pathogenic
GRCh37/hg19 8p23.3-21.2(chr8:1825200-24533193)x3 copy number gain not provided [RCV000683042] Chr8:1825200..24533193 [GRCh37]
Chr8:8p23.3-21.2
pathogenic
GRCh37/hg19 8p23.1-21.2(chr8:8770948-27079636)x3 copy number gain not provided [RCV000683041] Chr8:8770948..27079636 [GRCh37]
Chr8:8p23.1-21.2
pathogenic
GRCh37/hg19 8p23.1-12(chr8:12552775-35935825)x3 copy number gain not provided [RCV000683043] Chr8:12552775..35935825 [GRCh37]
Chr8:8p23.1-12
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:164984-146293414)x3 copy number gain not provided [RCV000747254] Chr8:164984..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:10213-146293414)x3 copy number gain not provided [RCV000747248] Chr8:10213..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.1-12(chr8:12556004-34374150)x3 copy number gain not provided [RCV000762735] Chr8:12556004..34374150 [GRCh37]
Chr8:8p23.1-12
likely pathogenic
NM_003867.4(FGF17):c.72+7G>A single nucleotide variant not provided [RCV000921538] Chr8:22043188 [GRCh38]
Chr8:21900699 [GRCh37]
Chr8:8p21.3
benign
NM_003867.4(FGF17):c.87G>T (p.Pro29=) single nucleotide variant not provided [RCV000905259] Chr8:22046128 [GRCh38]
Chr8:21903639 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.597C>T (p.Gly199=) single nucleotide variant not provided [RCV000950167]|not specified [RCV001818961] Chr8:22048195 [GRCh38]
Chr8:21905706 [GRCh37]
Chr8:8p21.3
benign|likely benign
NM_003867.4(FGF17):c.345G>A (p.Lys115=) single nucleotide variant not provided [RCV000920131] Chr8:22046621 [GRCh38]
Chr8:21904132 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.12C>A (p.Ala4=) single nucleotide variant not provided [RCV000925314] Chr8:22042940 [GRCh38]
Chr8:21900451 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.572A>G (p.Lys191Arg) single nucleotide variant not provided [RCV000975948] Chr8:22048170 [GRCh38]
Chr8:21905681 [GRCh37]
Chr8:8p21.3
likely benign
GRCh37/hg19 8p21.3-21.2(chr8:21662847-24199218)x1 copy number loss not provided [RCV000849161] Chr8:21662847..24199218 [GRCh37]
Chr8:8p21.3-21.2
pathogenic
GRCh37/hg19 8p21.3(chr8:21077580-22144930)x1 copy number loss not provided [RCV000846265] Chr8:21077580..22144930 [GRCh37]
Chr8:8p21.3
uncertain significance
GRCh37/hg19 8p21.3(chr8:20564910-22629124)x3 copy number gain not provided [RCV000847279] Chr8:20564910..22629124 [GRCh37]
Chr8:8p21.3
uncertain significance
GRCh37/hg19 8p21.3(chr8:21717395-22395625)x3 copy number gain not provided [RCV000846113] Chr8:21717395..22395625 [GRCh37]
Chr8:8p21.3
uncertain significance
GRCh37/hg19 8p21.3(chr8:21840451-22037635)x3 copy number gain not provided [RCV000846785] Chr8:21840451..22037635 [GRCh37]
Chr8:8p21.3
uncertain significance
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not provided [RCV000848478] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
NM_003867.4(FGF17):c.35+31C>G single nucleotide variant not provided [RCV001687289] Chr8:22042994 [GRCh38]
Chr8:21900505 [GRCh37]
Chr8:8p21.3
benign
NM_003867.4(FGF17):c.73-190C>T single nucleotide variant not provided [RCV001558471] Chr8:22045924 [GRCh38]
Chr8:21903435 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.159C>T (p.Arg53=) single nucleotide variant not provided [RCV000908054] Chr8:22046200 [GRCh38]
Chr8:21903711 [GRCh37]
Chr8:8p21.3
benign
NM_003867.4(FGF17):c.251-9C>A single nucleotide variant not provided [RCV000906587] Chr8:22046518 [GRCh38]
Chr8:21904029 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.73-309G>A single nucleotide variant not provided [RCV001540647] Chr8:22045805 [GRCh38]
Chr8:21903316 [GRCh37]
Chr8:8p21.3
benign
NM_003867.4(FGF17):c.-38G>A single nucleotide variant not provided [RCV001546181] Chr8:22042891 [GRCh38]
Chr8:21900402 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.339G>A (p.Arg113=) single nucleotide variant not provided [RCV001718328] Chr8:22046615 [GRCh38]
Chr8:21904126 [GRCh37]
Chr8:8p21.3
benign
NM_003867.4(FGF17):c.72+57C>T single nucleotide variant not provided [RCV001590872] Chr8:22043238 [GRCh38]
Chr8:21900749 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.*12G>C single nucleotide variant not provided [RCV001669503] Chr8:22048261 [GRCh38]
Chr8:21905772 [GRCh37]
Chr8:8p21.3
benign
NM_003867.4(FGF17):c.357+68T>C single nucleotide variant not provided [RCV001717489] Chr8:22046701 [GRCh38]
Chr8:21904212 [GRCh37]
Chr8:8p21.3
benign
NC_000008.11:g.22042640T>A single nucleotide variant not provided [RCV001648997] Chr8:22042640 [GRCh38]
Chr8:21900151 [GRCh37]
Chr8:8p21.3
benign
NM_003867.4(FGF17):c.72+65A>G single nucleotide variant not provided [RCV001652068] Chr8:22043246 [GRCh38]
Chr8:21900757 [GRCh37]
Chr8:8p21.3
benign
GRCh37/hg19 8p23.1-12(chr8:12528482-29886483)x3 copy number gain not provided [RCV001260030] Chr8:12528482..29886483 [GRCh37]
Chr8:8p23.1-12
likely pathogenic
GRCh37/hg19 8p21.3(chr8:21303187-22230498) copy number gain not specified [RCV002053755] Chr8:21303187..22230498 [GRCh37]
Chr8:8p21.3
uncertain significance
NC_000008.10:g.(?_21900440)_(23564111_?)dup duplication Conotruncal heart malformations [RCV003107885]|not provided [RCV001928022] Chr8:21900440..23564111 [GRCh37]
Chr8:8p21.3-21.2
uncertain significance|no classifications from unflagged records
NM_003867.4(FGF17):c.614G>A (p.Arg205Gln) single nucleotide variant not provided [RCV001939996] Chr8:22048212 [GRCh38]
Chr8:21905723 [GRCh37]
Chr8:8p21.3
uncertain significance
NM_003867.4(FGF17):c.250+7G>A single nucleotide variant not provided [RCV002124647] Chr8:22046298 [GRCh38]
Chr8:21903809 [GRCh37]
Chr8:8p21.3
benign
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771) copy number gain Polydactyly [RCV002280629] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p21.3-21.2(chr8:19779604-26531980)x4 copy number gain not provided [RCV002279745] Chr8:19779604..26531980 [GRCh37]
Chr8:8p21.3-21.2
pathogenic
GRCh37/hg19 8p23.3-12(chr8:158048-30187456)x1 copy number loss See cases [RCV002286343] Chr8:158048..30187456 [GRCh37]
Chr8:8p23.3-12
pathogenic
Single allele complex See cases [RCV002292428] Chr8:6999114..11935023 [GRCh37]
Chr8:8p23.3-11.21
pathogenic
NM_003867.4(FGF17):c.518A>G (p.His173Arg) single nucleotide variant not provided [RCV003015730] Chr8:22048116 [GRCh38]
Chr8:21905627 [GRCh37]
Chr8:8p21.3
uncertain significance
NM_003867.4(FGF17):c.222C>T (p.Ser74=) single nucleotide variant not provided [RCV002979782] Chr8:22046263 [GRCh38]
Chr8:21903774 [GRCh37]
Chr8:8p21.3
benign
NM_003867.4(FGF17):c.207C>T (p.Thr69=) single nucleotide variant not provided [RCV002705427] Chr8:22046248 [GRCh38]
Chr8:21903759 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.73-6G>A single nucleotide variant not provided [RCV002701121] Chr8:22046108 [GRCh38]
Chr8:21903619 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.14G>A (p.Arg5His) single nucleotide variant not specified [RCV004153120] Chr8:22042942 [GRCh38]
Chr8:21900453 [GRCh37]
Chr8:8p21.3
uncertain significance
NM_003867.4(FGF17):c.73-7C>T single nucleotide variant not provided [RCV002596106] Chr8:22046107 [GRCh38]
Chr8:21903618 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.35+15T>A single nucleotide variant not provided [RCV002765805] Chr8:22042978 [GRCh38]
Chr8:21900489 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.132C>T (p.Thr44=) single nucleotide variant not provided [RCV003084804] Chr8:22046173 [GRCh38]
Chr8:21903684 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.13C>T (p.Arg5Cys) single nucleotide variant not specified [RCV004137136] Chr8:22042941 [GRCh38]
Chr8:21900452 [GRCh37]
Chr8:8p21.3
uncertain significance
NM_003867.4(FGF17):c.212G>A (p.Arg71His) single nucleotide variant not specified [RCV004168288] Chr8:22046253 [GRCh38]
Chr8:21903764 [GRCh37]
Chr8:8p21.3
uncertain significance
NM_003867.4(FGF17):c.592G>T (p.Val198Leu) single nucleotide variant not specified [RCV004137207] Chr8:22048190 [GRCh38]
Chr8:21905701 [GRCh37]
Chr8:8p21.3
uncertain significance
NM_003867.4(FGF17):c.357+16T>C single nucleotide variant not provided [RCV002814303] Chr8:22046649 [GRCh38]
Chr8:21904160 [GRCh37]
Chr8:8p21.3
likely benign
GRCh38/hg38 8p23.1-12(chr8:12721809-30183737)x1 copy number loss Microcephaly [RCV003327707] Chr8:12721809..30183737 [GRCh38]
Chr8:8p23.1-12
pathogenic
GRCh38/hg38 8p23.3-21.2(chr8:449893-23854904)x1 copy number loss Neurodevelopmental disorder [RCV003327729] Chr8:449893..23854904 [GRCh38]
Chr8:8p23.3-21.2
pathogenic
NM_003867.4(FGF17):c.241A>G (p.Asn81Asp) single nucleotide variant not specified [RCV004363274] Chr8:22046282 [GRCh38]
Chr8:21903793 [GRCh37]
Chr8:8p21.3
uncertain significance
NM_003867.4(FGF17):c.257T>C (p.Leu86Pro) single nucleotide variant not specified [RCV004351455] Chr8:22046533 [GRCh38]
Chr8:21904044 [GRCh37]
Chr8:8p21.3
uncertain significance
NM_003867.4(FGF17):c.599C>A (p.Ser200Tyr) single nucleotide variant not provided [RCV003332806] Chr8:22048197 [GRCh38]
Chr8:21905708 [GRCh37]
Chr8:8p21.3
uncertain significance
GRCh37/hg19 8p23.1-21.1(chr8:12490999-28150620)x1 copy number loss not provided [RCV003483018] Chr8:12490999..28150620 [GRCh37]
Chr8:8p23.1-21.1
pathogenic
GRCh37/hg19 8p23.2-11.21(chr8:2201405-41723095)x3 copy number gain not provided [RCV003484713] Chr8:2201405..41723095 [GRCh37]
Chr8:8p23.2-11.21
pathogenic
Single allele duplication not provided [RCV003448693] Chr8:12530550..43483193 [GRCh37]
Chr8:8p23.1-11.1
pathogenic
GRCh37/hg19 8p23.1-11.23(chr8:11945856-37902453)x3 copy number gain not provided [RCV003484722] Chr8:11945856..37902453 [GRCh37]
Chr8:8p23.1-11.23
pathogenic
GRCh37/hg19 8p23.1-11.22(chr8:12560782-38748763)x3 copy number gain not provided [RCV003484724] Chr8:12560782..38748763 [GRCh37]
Chr8:8p23.1-11.22
pathogenic
GRCh37/hg19 8p22-11.1(chr8:14240573-43824035)x3 copy number gain not provided [RCV003484725] Chr8:14240573..43824035 [GRCh37]
Chr8:8p22-11.1
pathogenic
Single allele duplication not provided [RCV003448690] Chr8:20868762..22701502 [GRCh37]
Chr8:8p21.3
uncertain significance
NM_003867.4(FGF17):c.351C>T (p.Ile117=) single nucleotide variant not provided [RCV003436787] Chr8:22046627 [GRCh38]
Chr8:21904138 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.287G>A (p.Arg96Gln) single nucleotide variant FGF17-related condition [RCV003402242] Chr8:22046563 [GRCh38]
Chr8:21904074 [GRCh37]
Chr8:8p21.3
uncertain significance
NM_003867.4(FGF17):c.634C>T (p.Pro212Ser) single nucleotide variant not provided [RCV003825678] Chr8:22048232 [GRCh38]
Chr8:21905743 [GRCh37]
Chr8:8p21.3
uncertain significance
NM_003867.4(FGF17):c.630G>T (p.Arg210=) single nucleotide variant not provided [RCV003545095] Chr8:22048228 [GRCh38]
Chr8:21905739 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.359C>A (p.Pro120His) single nucleotide variant not provided [RCV003665043] Chr8:22047957 [GRCh38]
Chr8:21905468 [GRCh37]
Chr8:8p21.3
uncertain significance
NM_003867.4(FGF17):c.237C>T (p.Asp79=) single nucleotide variant not provided [RCV003733784] Chr8:22046278 [GRCh38]
Chr8:21903789 [GRCh37]
Chr8:8p21.3
likely benign
GRCh37/hg19 8p23.3-11.21(chr8:158048-41600696)x3 copy number gain not specified [RCV003986756] Chr8:158048..41600696 [GRCh37]
Chr8:8p23.3-11.21
pathogenic
GRCh37/hg19 8p21.3-11.1(chr8:20136266-43786723)x3 copy number gain not specified [RCV003986767] Chr8:20136266..43786723 [GRCh37]
Chr8:8p21.3-11.1
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not specified [RCV003986742] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
NM_003867.4(FGF17):c.444C>T (p.Gly148=) single nucleotide variant not provided [RCV003676679] Chr8:22048042 [GRCh38]
Chr8:21905553 [GRCh37]
Chr8:8p21.3
likely benign
NM_003867.4(FGF17):c.541G>A (p.Gly181Ser) single nucleotide variant not specified [RCV004394038] Chr8:22048139 [GRCh38]
Chr8:21905650 [GRCh37]
Chr8:8p21.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1821
Count of miRNA genes:677
Interacting mature miRNAs:821
Transcripts:ENST00000359441, ENST00000518533, ENST00000521709, ENST00000524314
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 585 63 53 1 1413 93 407
Low 1441 1430 755 230 467 104 2482 586 2161 166 1147 926 127 678 1589
Below cutoff 931 1484 316 333 1114 301 1670 1495 122 161 165 194 41 524 1107 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_033889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001304478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005273675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011544683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011544684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011544685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054361440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054361441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054361442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054361443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB009249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC091171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF497475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC113489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC143789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM666883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DR159037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000359441   ⟹   ENSP00000352414
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl822,042,820 - 22,048,809 (+)Ensembl
RefSeq Acc Id: ENST00000518533   ⟹   ENSP00000431041
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl822,042,398 - 22,048,806 (+)Ensembl
RefSeq Acc Id: ENST00000521709
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl822,044,569 - 22,048,159 (+)Ensembl
RefSeq Acc Id: ENST00000524314
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl822,044,672 - 22,048,806 (+)Ensembl
RefSeq Acc Id: NM_001304478   ⟹   NP_001291407
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38822,042,753 - 22,048,809 (+)NCBI
CHM1_1822,101,927 - 22,107,983 (+)NCBI
T2T-CHM13v2.0822,316,709 - 22,322,765 (+)NCBI
Sequence:
RefSeq Acc Id: NM_003867   ⟹   NP_003858
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38822,042,820 - 22,048,809 (+)NCBI
GRCh37821,900,264 - 21,906,320 (+)NCBI
Build 36821,956,374 - 21,962,266 (+)NCBI Archive
HuRef820,442,983 - 20,448,849 (+)ENTREZGENE
CHM1_1822,101,927 - 22,107,983 (+)NCBI
T2T-CHM13v2.0822,316,776 - 22,322,765 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005273675   ⟹   XP_005273732
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38822,044,549 - 22,048,809 (+)NCBI
GRCh37821,900,264 - 21,906,320 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011544683   ⟹   XP_011542985
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38822,039,672 - 22,048,809 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011544684   ⟹   XP_011542986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38822,039,708 - 22,048,809 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011544685   ⟹   XP_011542987
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38822,039,672 - 22,048,809 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054361440   ⟹   XP_054217415
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0822,318,505 - 22,322,765 (+)NCBI
RefSeq Acc Id: XM_054361441   ⟹   XP_054217416
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0822,313,628 - 22,322,765 (+)NCBI
RefSeq Acc Id: XM_054361442   ⟹   XP_054217417
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0822,313,664 - 22,322,765 (+)NCBI
RefSeq Acc Id: XM_054361443   ⟹   XP_054217418
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0822,313,628 - 22,322,765 (+)NCBI
RefSeq Acc Id: NP_003858   ⟸   NM_003867
- Peptide Label: isoform 1 precursor
- UniProtKB: B7ZLG4 (UniProtKB/Swiss-Prot),   Q2M2W1 (UniProtKB/Swiss-Prot),   O60258 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005273732   ⟸   XM_005273675
- Peptide Label: isoform X1
- UniProtKB: A0A7U3JVY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001291407   ⟸   NM_001304478
- Peptide Label: isoform 2 precursor
- UniProtKB: O60258 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011542986   ⟸   XM_011544684
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011542985   ⟸   XM_011544683
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011542987   ⟸   XM_011544685
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSP00000352414   ⟸   ENST00000359441
RefSeq Acc Id: ENSP00000431041   ⟸   ENST00000518533
RefSeq Acc Id: XP_054217416   ⟸   XM_054361441
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054217418   ⟸   XM_054361443
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054217417   ⟸   XM_054361442
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054217415   ⟸   XM_054361440
- Peptide Label: isoform X1
- UniProtKB: A0A7U3JVY9 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O60258-F1-model_v2 AlphaFold O60258 1-216 view protein structure

Promoters
RGD ID:7212769
Promoter ID:EPDNEW_H12130
Type:multiple initiation site
Name:FGF17_1
Description:fibroblast growth factor 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38822,042,389 - 22,042,449EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:3673 AgrOrtholog
COSMIC FGF17 COSMIC
Ensembl Genes ENSG00000158815 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000359441 ENTREZGENE
  ENST00000359441.4 UniProtKB/Swiss-Prot
  ENST00000518533 ENTREZGENE
  ENST00000518533.5 UniProtKB/Swiss-Prot
  ENST00000524314 ENTREZGENE
Gene3D-CATH 2.80.10.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000158815 GTEx
HGNC ID HGNC:3673 ENTREZGENE
Human Proteome Map FGF17 Human Proteome Map
InterPro Fibroblast_GF_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL1/FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:8822 UniProtKB/Swiss-Prot
NCBI Gene 8822 ENTREZGENE
OMIM 603725 OMIM
PANTHER PTHR11486 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11486:SF71 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA28112 PharmGKB
PRINTS IL1HBGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HBGF_FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50353 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A7U3JVY9 ENTREZGENE, UniProtKB/TrEMBL
  B7ZLG4 ENTREZGENE
  FGF17_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q2M2W1 ENTREZGENE
UniProt Secondary B7ZLG4 UniProtKB/Swiss-Prot
  Q2M2W1 UniProtKB/Swiss-Prot