LOC100360828 (cAMP-regulated phosphoprotein 19-like) - Rat Genome Database

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Gene: LOC100360828 (cAMP-regulated phosphoprotein 19-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100360828
Name: cAMP-regulated phosphoprotein 19-like
RGD ID: 2321330
Description: Orthologous to human ARPP19 (cAMP regulated phosphoprotein 19).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: cAMP-regulated phosphoprotein 19
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Arpp19  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88119,692,006 - 119,692,344 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8119,691,942 - 119,692,385 (-)EnsemblGRCr8
mRatBN7.28110,813,594 - 110,813,932 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8110,813,545 - 110,814,012 (-)EnsemblmRatBN7.2
Rnor_6.08119,105,962 - 119,106,371 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl881,949,877 - 81,968,589 (+)Ensemblrn6Rnor6.0
Rnor_5.08118,444,272 - 118,444,673 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48115,218,064 - 115,222,269 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8110,096,142 - 110,096,551 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_002729972   ⟹   XP_002730018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28110,813,563 - 110,813,983 (-)NCBI
Rnor_6.08119,105,962 - 119,106,371 (-)NCBI
Rnor_5.08118,444,272 - 118,444,673 (-)NCBI
RGSC_v3.48115,218,064 - 115,222,269 (-)RGD
Sequence:
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q712U5-F1-model_v2 AlphaFold Q712U5 1-112 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2321330 AgrOrtholog
BioCyc Gene G2FUF-29052 BioCyc
Ensembl Genes ENSRNOG00000023086 Ensembl
NCBI Gene 100360828 ENTREZGENE
PhenoGen LOC100360828 PhenoGen
RatGTEx ENSRNOG00000023086 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-05 LOC100360828  cAMP-regulated phosphoprotein 19-like      Symbol and Name status set to provisional 70820 PROVISIONAL