Rps15al2 (ribosomal protein S15A-like 2) - Rat Genome Database

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Gene: Rps15al2 (ribosomal protein S15A-like 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps15al2 (Ensembl: AABR07072261.1)
Name: ribosomal protein S15A-like 2
RGD ID: 2318744
Description: Predicted to be a structural constituent of ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 20. Orthologous to human RPS15A (ribosomal protein S15a).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S15a-like; hCG1994130-like; LOC100362139; ribosomal protein S15A, pseudogene 2; Rps15a-ps2; small ribosomal subunit protein uS8-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,913,037 - 93,913,499 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1193,913,039 - 93,929,817 (+)EnsemblGRCr8
mRatBN7.21180,408,656 - 80,409,118 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,408,680 - 80,409,072 (+)EnsemblmRatBN7.2
Rnor_6.01184,094,470 - 84,094,958 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01187,165,788 - 87,166,324 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41182,648,253 - 82,648,645 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1179,248,650 - 79,249,138 (+)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)119046178196556255Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)118295102896351019Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat

Markers in Region
RH128261  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q35UniSTS
Cytogenetic Map8q24UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
exocrine system
hemolymphoid system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
1 7 1 5 67 1 49 2 71 55 1 74 10 13 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000046642   ⟹   ENSRNOP00000049286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1193,913,039 - 93,929,817 (+)Ensembl
mRatBN7.2 Ensembl1180,408,680 - 80,409,072 (+)Ensembl
Rnor_6.0 Ensembl1184,094,520 - 84,094,912 (+)Ensembl
RefSeq Acc Id: XM_039088958   ⟹   XP_038944886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,913,037 - 93,913,499 (+)NCBI
mRatBN7.21180,408,656 - 80,409,118 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038944886 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000049286
  ENSRNOP00000049286.2
  ENSRNOP00000051016
RefSeq Acc Id: XP_038944886   ⟸   XM_039088958
- UniProtKB: D3ZZC7 (UniProtKB/TrEMBL),   D3ZS61 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000049286   ⟸   ENSRNOT00000046642

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZC7-F1-model_v2 AlphaFold D3ZZC7 1-130 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2318744 AgrOrtholog
BioCyc Gene G2FUF-20728 BioCyc
Ensembl Genes ENSRNOG00000030447 UniProtKB/TrEMBL
  ENSRNOG00000032877 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041753 UniProtKB/TrEMBL
  ENSRNOT00000046642 ENTREZGENE
  ENSRNOT00000046642.6 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.30 UniProtKB/TrEMBL
  3.30.1490.10 UniProtKB/TrEMBL
InterPro Ribosomal_S8 UniProtKB/TrEMBL
  Ribosomal_S8_sf UniProtKB/TrEMBL
  Ribosomal_uS8_CS UniProtKB/TrEMBL
NCBI Gene 100362139 ENTREZGENE
PANTHER PTHR11758 UniProtKB/TrEMBL
Pfam Ribosomal_S8 UniProtKB/TrEMBL
PhenoGen Rps15al2 PhenoGen
PROSITE RIBOSOMAL_S8 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030447 RatGTEx
  ENSRNOG00000032877 RatGTEx
Superfamily-SCOP SSF56047 UniProtKB/TrEMBL
UniProt D3ZS61 ENTREZGENE, UniProtKB/TrEMBL
  D3ZZC7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-07 Rps15al2  ribosomal protein S15A-like 2  Rps15a-ps2  ribosomal protein S15A, pseudogene 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-08-27 Rps15a-ps2  ribosomal protein S15A, pseudogene 2  LOC100362139  hCG1994130-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 LOC100362139  hCG1994130-like      Symbol and Name status set to provisional 70820 PROVISIONAL