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Gene: Rnf123 (ring finger protein 123) Rattus norvegicus

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Symbol:

Rnf123

Name:

ring finger protein 123

RGD ID:

2301394

Description:

Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein maturation; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within canonical NF-kappaB signal transduction. Predicted to be active in cytoplasm. Orthologous to human RNF123 (ring finger protein 123); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

E3 ubiquitin-protein ligase RNF123; hypothetical protein LOC100190936; kip1 ubiquitination-promoting complex protein 1; RING-type E3 ubiquitin transferase RNF123

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RNF123 (ring finger protein 123)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rnf123 (ring finger protein 123)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rnf123 (ring finger protein 123)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RNF123 (ring finger protein 123)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RNF123 (ring finger protein 123)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rnf123 (ring finger protein 123)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RNF123 (ring finger protein 123)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RNF123 (ring finger protein 123)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rnf123 (ring finger protein 123)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rnf123 (ring finger protein 123)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	BET1L (Bet1 golgi vesicular membrane trafficking protein like)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RNF123 (ring finger protein 123)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RNF123 (ring finger protein 123)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rnf123 (ring finger protein 123)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rnf123 (ring finger protein 123)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6752	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6752	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rnf123	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rnf123	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,618,776 - 117,646,400 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	117,618,425 - 117,646,274 (-)	Ensembl				GRCr8
mRatBN7.2	8	108,740,176 - 108,768,177 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,739,620 - 108,767,675 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	114,366,459 - 114,393,891 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,565,783 - 112,593,215 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	110,408,423 - 110,435,855 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	116,829,050 - 116,857,050 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,829,050 - 116,856,548 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	116,183,372 - 116,211,131 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	113,319,535 - 113,347,035 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	108,044,888 - 108,071,888 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hypertrophic cardiomyopathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

exemestane (ISO)

FR900359 (ISO)

ivermectin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methamphetamine (ISO)

methapyrilene (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (ISO)

oxaliplatin (EXP)

ozone (EXP,ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

piperonyl butoxide (ISO)

thioacetamide (EXP)

topotecan (EXP)

triphenyl phosphate (ISO)

tungsten (ISO)

uranium atom (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein catabolic process (IEA)

protein maturation (ISO,ISS)

protein polyubiquitination (ISO)

protein ubiquitination (IEA)

proteolysis involved in protein catabolic process (IBA)

ubiquitin-dependent protein catabolic process (ISO,ISS)

Cellular Component

cytoplasm (IBA,IEA,ISO,ISS)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IEA,ISO,ISS)

ubiquitin-protein transferase activity (IBA,IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:21229311	PMID:26514267	PMID:31148189

Genomics

Comparative Map Data

Rnf123
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,618,776 - 117,646,400 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	117,618,425 - 117,646,274 (-)	Ensembl				GRCr8
mRatBN7.2	8	108,740,176 - 108,768,177 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,739,620 - 108,767,675 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	114,366,459 - 114,393,891 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,565,783 - 112,593,215 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	110,408,423 - 110,435,855 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	116,829,050 - 116,857,050 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,829,050 - 116,856,548 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	116,183,372 - 116,211,131 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	113,319,535 - 113,347,035 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	108,044,888 - 108,071,888 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

RNF123
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	49,689,557 - 49,721,529 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	49,688,740 - 49,721,532 (+)	Ensembl			hg38	GRCh38
GRCh37	3	49,726,990 - 49,758,962 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	49,701,994 - 49,733,966 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	49,701,993 - 49,733,965	NCBI
Celera	3	49,691,681 - 49,723,653 (+)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	49,785,929 - 49,817,938 (+)	NCBI		HuRef
CHM1_1	3	49,679,005 - 49,711,020 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	49,718,842 - 49,750,815 (+)	NCBI		T2T-CHM13v2.0

Rnf123
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	107,928,869 - 107,957,183 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	107,928,733 - 107,960,545 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	108,051,672 - 108,080,352 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	108,051,534 - 108,083,346 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	107,954,171 - 107,980,134 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	107,909,941 - 107,935,904 (-)	NCBI		MGSCv36	mm8
Celera	9	107,661,690 - 107,687,572 (-)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	59.07	NCBI

Rnf123
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	1,596,080 - 1,625,672 (+)	Ensembl
ChiLan1.0	NW_004955532	1,595,970 - 1,622,633 (+)	NCBI	ChiLan1.0	ChiLan1.0

RNF123
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	49,676,350 - 49,708,128 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	49,681,127 - 49,712,902 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	49,621,909 - 49,653,668 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	50,865,324 - 50,889,509 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	50,865,022 - 50,889,509 (+)	Ensembl			panPan2	panpan1.1

RNF123
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	39,553,016 - 39,582,127 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	39,553,059 - 39,579,844 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	39,473,940 - 39,502,846 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	39,910,535 - 39,939,453 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	39,910,538 - 39,939,014 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	39,277,607 - 39,306,522 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	39,680,977 - 39,709,891 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	39,960,807 - 39,989,722 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rnf123
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	64,546,366 - 64,575,535 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	1,306,968 - 1,336,032 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	1,306,849 - 1,336,032 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF123
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	32,218,384 - 32,250,739 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	32,216,761 - 32,250,742 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	35,397,754 - 35,429,943 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNF123
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	11,084,216 - 11,116,527 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	11,085,808 - 11,116,287 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	155,883,929 - 155,916,356 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnf123
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	3,618,269 - 3,645,797 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	3,617,488 - 3,645,797 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rnf123
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	99,380,171 - 99,408,757 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rnf123
208 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	120
Count of miRNA genes:	64
Interacting mature miRNAs:	69
Transcripts:	ENSRNOT00000043825, ENSRNOT00000050344
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
631217	Activ1	Activity QTL 1	15.9		voluntary movement trait (VT:0003491)	number of photobeam interruptions in an experimental apparatus (CMO:0001517)	8	111249511	117802327	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

RH129768

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	108,744,055 - 108,744,231 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,832,930 - 116,833,105	NCBI	Rnor6.0
Rnor_5.0	8	116,187,252 - 116,187,427	UniSTS	Rnor5.0
RGSC_v3.4	8	113,323,415 - 113,323,590	UniSTS	RGSC3.4
Celera	8	108,048,768 - 108,048,943	UniSTS
Cytogenetic Map	8	q32	UniSTS

RH139593

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	108,741,840 - 108,742,025 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,830,715 - 116,830,899	NCBI	Rnor6.0
Rnor_5.0	8	116,185,037 - 116,185,221	UniSTS	Rnor5.0
RGSC_v3.4	8	113,321,200 - 113,321,384	UniSTS	RGSC3.4
Celera	8	108,046,553 - 108,046,737	UniSTS
RH 3.4 Map	8	1118.6	UniSTS
Cytogenetic Map	8	q32	UniSTS

BE119447

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	108,742,655 - 108,742,810 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,831,530 - 116,831,684	NCBI	Rnor6.0
Rnor_5.0	8	116,185,852 - 116,186,006	UniSTS	Rnor5.0
RGSC_v3.4	8	113,322,015 - 113,322,169	UniSTS	RGSC3.4
Celera	8	108,047,368 - 108,047,522	UniSTS
RH 3.4 Map	8	1119.2	UniSTS
Cytogenetic Map	8	q32	UniSTS

MARC_17265-17266:1024683815:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	117,636,828 - 117,637,339 (+)	Marker Load Pipeline
mRatBN7.2	8	108,758,229 - 108,758,740 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,847,103 - 116,847,613	NCBI	Rnor6.0
Rnor_5.0	8	116,201,425 - 116,201,935	UniSTS	Rnor5.0
RGSC_v3.4	8	113,337,588 - 113,338,098	UniSTS	RGSC3.4
Celera	8	108,062,960 - 108,063,470	UniSTS
Cytogenetic Map	8	q32	UniSTS

Amigo3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	108,742,329 - 108,743,321 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	116,831,204 - 116,832,195	NCBI	Rnor6.0
Rnor_5.0	8	116,185,526 - 116,186,517	UniSTS	Rnor5.0
RGSC_v3.4	8	113,321,689 - 113,322,680	UniSTS	RGSC3.4
Celera	8	108,047,042 - 108,048,033	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001839125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000043825 ⟹ ENSRNOP00000041545

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	117,618,425 - 117,646,274 (-)	Ensembl
mRatBN7.2 Ensembl	8	108,739,620 - 108,767,675 (-)	Ensembl
Rnor_6.0 Ensembl	8	116,829,050 - 116,856,548 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000050344 ⟹ ENSRNOP00000049507

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	116,829,234 - 116,855,062 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000159612 ⟹ ENSRNOP00000110165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	117,618,776 - 117,646,274 (-)	Ensembl

RefSeq Acc Id:

NM_001191580 ⟹ NP_001178509

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,618,776 - 117,646,274 (-)	NCBI
mRatBN7.2	8	108,740,176 - 108,767,675 (-)	NCBI
Rnor_6.0	8	116,829,050 - 116,856,548 (-)	NCBI
Rnor_5.0	8	116,183,372 - 116,211,131 (-)	NCBI
Celera	8	108,044,888 - 108,071,888 (-)	NCBI

Sequence:

show sequence

TGAGAGGCGGCCTGGCTACGAGCCGGGCGGGTCCGGTGACTCCCTTCGAGGCCCCTGGCCGATC
CAGTGCGACAGTGCCGCGGCCTGCGGTATAGGGCTCCCAGCGGGAGCTGGCCTGACAGGTCCTA
TGGAGCTTGGGGCCAAGTAGGGGCGACCTGGGGGAGCATGCGCTGCCCTTGACATCCTTGGCCA
CCCAGACTTAGTCGGTTCGGTTTCGAGCCTGGATCTCTTAGAAGGGCTGGGCAGTAATGGCGTG
GCTGGGAGCCCTGGGGCAGACGCAGGTTCCGCCTCTAAATCCTCTACACTTGACACCCAGAGTG
TGTGTCTGGAAGGTTGACTTCCAGTTCTTACTAACTGCGTCCAATAAGTCCAGCAATTGTTGCA
ATATAAGAGGGACTGGTTGTGGATGTCCATCGAGGGCCCCCGGAGGGCGGCACAGCGGCAGAAT
CACCTTCCCGAGCGAGCCTGCCTCCAGGACCAGTGACTGCCGATGAGCGGTGAAAGATGACGTC
CAAGGGGGCTGCCATGTCTTTCTCCCGAAAGAGCTATAGGTTGACCTCAGATGCTGAGAAGTCC
AGGGTCACAGGCATTGTGCAAGAGAAGCTACTGAGCGACTACCTGTACCGGATCTTTTCCTCTC
CTGACCATGGGACCCCTGCAGCCACCAGCAGGAAACCGCTGAACTTCCATAACCTGCCAGAGCA
TGTGGACCAGCTGCTGCAGGTGGACGACGAAGAGAGCCAGGGACAAGTTGAAGGCCGACTTGGC
CCATCTACTGTGGTCCTAGACCACACAGGAGGCTTTGAGGGGCTTCTCCTTGTGGACGATGACC
TCCTGGGGGTGATTGGACACAGCAACTTTGGCACTATCCGTTCTTCCACATGTGTGTACAAAGG
GAAATGGGTCTACGAGGTGCTCATCTCCTCCCAGGGGCTCATGCAGATCGGCTGGTGTACCATC
AACTGCCGCTTTAATCAGGAGGAAGGGGTTGGAGATACACACAACTCCTATGCCTATGACGGCA
ACCGAGTGCGCAAGTGGAACGTGACGACGACGAACTACGGCAAGGCATGGGCAGCGGGGGACAT
TGTGAGCTGCCTCATTGATCTGGATGATGGTACTCTGTCCTTTTGCCTGAATGGTGTGTCACTG
GGCACTGCCTTTGAGAACCTTTCCAGGGGCCTAGGAATGGCGTACTTCCCAGCCATCAGCCTGT
CGTTCAAGGAGTCTGTGGCATTCAACTTTGGCAGCCGACCTTTGCGCTACCCAGTTGCGGGCTT
CCGGCCCCTGCAGGACCCTCCCTTTGCTGACCTGGTCCGGGCACAGAGGTTGCTGGGCTGCTTC
CAGACAGTGCTAAGTGTAGAGCTGGACCCTGTGGAAGGGCGGTTGGTGGAGAAGGAGAGCTCTG
AGTGGCAGCTGCACGGGCAGCCCACTGTCCTCCTCACGCTGGCCCACATCTTCCATCACTTTGC
ACCACTGCTGCGCAAGGTGTACCTAGTGGAGGCTGTGCTCATGAGCTTCCTGCTGGGCATTGTG
GAGAAGGGCACCCCTGAGCAGGCCCAGTCCGTGGTACACCAGATCTTGGACCTCTTGTGGCTCT
TCATGGAGGACTATGAAGTTCAGGATTGCCTCAAGCAGTTGATGATGTCTCTGCTACGTCTCTA
CCGATTCTCGCCCATTGTTCCGGACCTGGGTCTACAGATCCACTACCTGCGCCTCACTATGGCC
GTCCTGAGACATGAGAAGTCCCGCAAGTTCCTGCTTAGCAATGTCCTTTTTGACATGCTCCGGT
CCGTGGTCTTCTTTTACATTAAGAGTCCCCTGCGTGTGGAGGAAGCTGGCCTGAAGGAACTCAT
CCCCACCACCTGGTGGCCCCATCGCTCCAGCAGGGAGGGCAGAGACGGTCAGGAAGCAAAGGAG
GAGACCACGGAAGAGCGGCAGCGGAGGAGAGCTTACGAGCGTGGCTGCCAAAGACTCAAGAAAC
GCATTGAAGTGGTGGAAGAACTGCAGGTCCAGATCCTGAAGCTGCTGTTGGACAACAAAGATGA
CAATGGGGGTGAAGCTTCTCGGTACATCTTTCTGACAAAATTCCGAAAGTTCCTGCAGGAGAAT
GCCAGTGGCCGGGGGAACACACCCGTGCTCTGCCCCCCTGAGTACATGGTCTGTTTCCTACACC
GGCTGGTGTCTGCCTTGCGTTTCTATTGGGATGAATACAAAGCTTCCAACCCCCGTGCTTCCTT
TAGCGATGAGGCTTATATCCCGCCTCAGATCTTCTATAATGGCAAGGTGGACTACTTCGACCTT
CAGCGCCTCGGGGGCCTCCTCTCACACCTTCGAAAGACCCTTAAAGATGACCTTGCTTCCAAAG
CCAATATCGTGATTGATCCCCTGGAGCTCCAGGCAGCCACCATGGATGACCTGGATGAGGATGA
AGAGCCGGCCCCCACAGCAGCCCAGCGTCCCGTGCAAGCACTGGCCATAGGAGGGGCCCTGCCC
CTGCCCCGGCCTGGCTGGCTAAGTTCTCCAACCCTGGGCCGAGCCAACCGTTTCCTCAGCACAG
CAGCCGTGAGCCTCATGACCCCACGGCGGCTTCTGAGCACCATGGAGAAAGTAAAAGTTCGCTC
CCTGAATGTGGAACAGAGGACCCGTGAGGACATTGAGGGCAGCCACTGGAATGAGGGTCTGCTG
TTGGGGAGGCCCCCTGAAGAGCCTGAGCGGCCGCTTACGGAAAACTCGCTGTTGGAAGTTCTGG
ATGGCACAGTCATGATGTACAGTCTGAGCGTTCACCAGCAGCTGGGCAAGATGGTGGGTGTGTC
TGATGATGTCAACGAGTATGCAATGGCCCTGAGAGACACCGAGGACAAGCTACGTCGGTGCCCT
AAGAGGAGGAAGGATATCCTTGCAGAGTTGACCAAGAGCCAGAAGGTTTTCTCAGAAAAGCTGG
ACCACCTGAGCCGCAGGCTTGCCTGGGTCCATGCCACCGTCTACTCACAGGAGAAAATGCTGGA
TATCTACTGGTTACTGCGTGTCTGCCTACAGACCATTGAGCATGGGGATCGCACAGGATCTCTC
TTTGCCTTCATGCCCGAGTTTTACCTAAGTGTGGCTATCAACAGCTACAGTGCCCTTAAGAATT
ATTTTGGCCCTGTGCACAGCATGGAGGAGCTCCCAGGCTATGAAGAGACCCTGACCCGCTTAGC
TGCCATCCTCGCCAAACACTTTGCTGACCCTCGAATAGTAGGCACTGACATTCGAGACTCGCTG
ATGCAGGCCCTGGCCAGTTACGTGTGTTACCCACATTCCCTGCGGGCCGTGGAACGGATCCCCG
AGGAGCAGCGCATCGCCATGGTGAGGAACCTTTTGGCCCCCTATGAGCAACGACCCTGGGCCCA
GACCAACTGGATCCTGGTGCGGCTTTGGAGGGGCTGTGGTTTTGGGTACCGCTACACACGGCTG
CCACATCTGCTGAAAACCAAGCCAGAGGATGCTAATTTGCCAAGCCTCCAAAAGCCCTGCCCTT
CAACCTTGCTACAGCAGCACATGGCAGACCTTCTGCGACAAGGTTCTGATGTGGCACCAAGCTT
CCTCAACAGCGTCCTTAACCAGCTCAACTGGGCCTTCTCTGAGTTCATCGGCATGATCCAGGAG
ATTCAACAGGCTGCTGAACGCCTAGAGCGAAACTTTGTGGACAGCCGGCAGCTCAAGGTCTGTG
CCACCTGCTTCGACCTGTCAGTCAGCTTGCTGCGCGTCTTGGAAATGACCATCACACTGGTCCC
TGAAATCTTCCTTGACTGGTCCCGCCCTACCTCTGAGATGCTGCTTCGGCGTCTTGCACAGCTG
CTGAACCAGGTGCTGAACCGGGTGACAGCTGAGAGGAACCTGTTTGACCGTGTAGTCACGCTGC
GGCTACCTGGGCTGGAGAGTGTGGACCACTACCCTATCTTGGTGGCAGTGACCGGCATCCTGGT
ACGCCTCCTGGCACACGGTCCATCCTCAGAGACAGAGCAAGCCACATCTGTGCTCCTGGCTGAT
CCCTGCTTCCAGCTCCGCTCTATACGCTATCTCCTGGGGCAGCCAGAGCCCCTAGCACCTGGCT
CCGCCTTGCCTGCCCCTGACCGGAAACGCTTCTCTCTACAGAGCTATGCAGATTACATCAGTGC
TGAGGAGCTGGCCCAGGTGGAACGGATGCTGGCTCACCTGACCGCGGCATCGGCCCAGGCAGCA
GCTGCCTCCCTGCCCACCAATGAGGAGGACCTCTGCCCAATCTGCTATGCCCACCCCATCTCTG
CTGTGTTCCAGCCTTGTGGTCACAAATCCTGCAAAGCCTGCATCAACCAGCATCTGATGAACAA
CAAGGACTGCTTCTTCTGCAAAGCCACCATTGTATCTGTAGAGGACTGGGACAAGGCAGCCAGC
ACAAGTGCCACATCCTCAGCTGCCTAGGCTGTCCTGGAAACCCACCATCAGACGCAGTCCGAGT
CCTATTTATGAGCTCCCTTGGCCCTGTCCCCATCACCCTCGCTCTTACCACTCCCACCCATCTG
CCTGTGTGTGCATAGCCTCACTGGTGGGAGGGAGCCTGAGTCCAGTCCAGGCCACAGTGAGCAT
TAAATTATTATTCCCTTCA

hide sequence

RefSeq Acc Id:

XM_006243691 ⟹ XP_006243753

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,618,776 - 117,646,394 (-)	NCBI
mRatBN7.2	8	108,740,176 - 108,767,794 (-)	NCBI
Rnor_6.0	8	116,829,050 - 116,856,682 (-)	NCBI
Rnor_5.0	8	116,183,372 - 116,211,131 (-)	NCBI

Sequence:

show sequence

CGGTCTGTGCATATGCGCGTGCGCGGCTGGAGCGGCGCGCGAGCGGGCACGCGGTTTGGCCCTG
GACGGGTGCCGTAGCTGAAAAGCTGGGCGGATGTTGTGAGCCGGTCGCGGAGGCTGAGGCCGGG
GGACTGAGGTCTGTGTGGGCCTTTGACTAGCCTGGAGTAGACACTCTGCATCTGGCTCAGCCTC
CAGGACCAGTGACTGCCGATGAGCGGTGAAAGATGACGTCCAAGGGGGCTGCCATGTCTTTCTC
CCGAAAGAGCTATAGGTTGACCTCAGATGCTGAGAAGTCCAGGGTCACAGGCATTGTGCAAGAG
AAGCTACTGAGCGACTACCTGTACCGGATCTTTTCCTCTCCTGACCATGGGACCCCTGCAGCCA
CCAGCAGGAAACCGCTGAACTTCCATAACCTGCCAGAGCATGTGGACCAGCTGCTGCAGGTGGA
CGACGAAGAGAGCCAGGGACAAGTTGAAGGCCGACTTGGCCCATCTACTGTGGTCCTAGACCAC
ACAGGAGGCTTTGAGGGGCTTCTCCTTGTGGACGATGACCTCCTGGGGGTGATTGGACACAGCA
ACTTTGGCACTATCCGTTCTTCCACATGTGTGTACAAAGGGAAATGGGTCTACGAGGTGCTCAT
CTCCTCCCAGGGGCTCATGCAGATCGGCTGGTGTACCATCAACTGCCGCTTTAATCAGGAGGAA
GGGGTTGGAGATACACACAACTCCTATGCCTATGACGGCAACCGAGTGCGCAAGTGGAACGTGA
CGACGACGAACTACGGCAAGGCATGGGCAGCGGGGGACATTGTGAGCTGCCTCATTGATCTGGA
TGATGGTACTCTGTCCTTTTGCCTGAATGGTGTGTCACTGGGCACTGCCTTTGAGAACCTTTCC
AGGGGCCTAGGAATGGCGTACTTCCCAGCCATCAGCCTGTCGTTCAAGGAGTCTGTGGCATTCA
ACTTTGGCAGCCGACCTTTGCGCTACCCAGTTGCGGGCTTCCGGCCCCTGCAGGACCCTCCCTT
TGCTGACCTGGTCCGGGCACAGAGGTTGCTGGGCTGCTTCCAGACAGTGCTAAGTGTAGAGCTG
GACCCTGTGGAAGGGCGGTTGGTGGAGAAGGAGAGCTCTGAGTGGCAGCTGCACGGGCAGCCCA
CTGTCCTCCTCACGCTGGCCCACATCTTCCATCACTTTGCACCACTGCTGCGCAAGGTGTACCT
AGTGGAGGCTGTGCTCATGAGCTTCCTGCTGGGCATTGTGGAGAAGGGCACCCCTGAGCAGGCC
CAGTCCGTGGTACACCAGATCTTGGACCTCTTGTGGCTCTTCATGGAGGACTATGAAGTTCAGG
ATTGCCTCAAGCAGTTGATGATGTCTCTGCTACGTCTCTACCGATTCTCGCCCATTGTTCCGGA
CCTGGGTCTACAGATCCACTACCTGCGCCTCACTATGGCCGTCCTGAGACATGAGAAGTCCCGC
AAGTTCCTGCTTAGCAATGTCCTTTTTGACATGCTCCGGTCCGTGGTCTTCTTTTACATTAAGA
GTCCCCTGCGTGTGGAGGAAGCTGGCCTGAAGGAACTCATCCCCACCACCTGGTGGCCCCATCG
CTCCAGCAGGGAGGGCAGAGACGGTCAGGAAGCAAAGGAGGAGACCACGGAAGAGCGGCAGCGG
AGGAGAGCTTACGAGCGTGGCTGCCAAAGACTCAAGAAACGCATTGAAGTGGTGGAAGAACTGC
AGGTCCAGATCCTGAAGCTGCTGTTGGACAACAAAGATGACAATGGGGGTGAAGCTTCTCGGTA
CATCTTTCTGACAAAATTCCGAAAGTTCCTGCAGGAGAATGCCAGTGGCCGGGGGAACACACCC
GTGCTCTGCCCCCCTGAGTACATGGTCTGTTTCCTACACCGGCTGGTGTCTGCCTTGCGTTTCT
ATTGGGATGAATACAAAGCTTCCAACCCCCGTGCTTCCTTTAGCGATGAGGCTTATATCCCGCC
TCAGATCTTCTATAATGGCAAGGTGGACTACTTCGACCTTCAGCGCCTCGGGGGCCTCCTCTCA
CACCTTCGAAAGACCCTTAAAGATGACCTTGCTTCCAAAGCCAATATCGTGATTGATCCCCTGG
AGCTCCAGGCAGCCACCATGGATGACCTGGATGAGGATGAAGAGCCGGCCCCCACAGCAGCCCA
GCGTCCCGTGCAAGCACTGGCCATAGGAGGGGCCCTGCCCCTGCCCCGGCCTGGCTGGCTAAGT
TCTCCAACCCTGGGCCGAGCCAACCGTTTCCTCAGCACAGCAGCCGTGAGCCTCATGACCCCAC
GGCGGCTTCTGAGCACCATGGAGAAAGTAAAAGTTCGCTCCCTGAATGTGGAACAGAGGACCCG
TGAGGACATTGAGGGCAGCCACTGGAATGAGGGTCTGCTGTTGGGGAGGCCCCCTGAAGAGCCT
GAGCGGCCGCTTACGGAAAACTCGCTGTTGGAAGTTCTGGATGGCACAGTCATGATGTACAGTC
TGAGCGTTCACCAGCAGCTGGGCAAGATGGTGGGTGTGTCTGATGATGTCAACGAGTATGCAAT
GGCCCTGAGAGACACCGAGGACAAGCTACGTCGGTGCCCTAAGAGGAGGAAGGATATCCTTGCA
GAGTTGACCAAGAGCCAGAAGGTTTTCTCAGAAAAGCTGGACCACCTGAGCCGCAGGCTTGCCT
GGGTCCATGCCACCGTCTACTCACAGGAGAAAATGCTGGATATCTACTGGTTACTGCGTGTCTG
CCTACAGACCATTGAGCATGGGGATCGCACAGGATCTCTCTTTGCCTTCATGCCCGAGTTTTAC
CTAAGTGTGGCTATCAACAGCTACAGTGCCCTTAAGAATTATTTTGGCCCTGTGCACAGCATGG
AGGAGCTCCCAGGCTATGAAGAGACCCTGACCCGCTTAGCTGCCATCCTCGCCAAACACTTTGC
TGACCCTCGAATAGTAGGCACTGACATTCGAGACTCGCTGATGCAGGCCCTGGCCAGTTACGTG
TGTTACCCACATTCCCTGCGGGCCGTGGAACGGATCCCCGAGGAGCAGCGCATCGCCATGGTGA
GGAACCTTTTGGCCCCCTATGAGCAACGACCCTGGGCCCAGACCAACTGGATCCTGGTGCGGCT
TTGGAGGGGCTGTGGTTTTGGGTACCGCTACACACGGCTGCCACATCTGCTGAAAACCAAGCCA
GAGGATGCTAATTTGCCAAGCCTCCAAAAGCCCTGCCCTTCAACCTTGCTACAGCAGCACATGG
CAGACCTTCTGCGACAAGGTTCTGATGTGGCACCAAGCTTCCTCAACAGCGTCCTTAACCAGCT
CAACTGGGCCTTCTCTGAGTTCATCGGCATGATCCAGGAGATTCAACAGGCTGCTGAACGCCTA
GAGCGAAACTTTGTGGACAGCCGGCAGCTCAAGGTCTGTGCCACCTGCTTCGACCTGTCAGTCA
GCTTGCTGCGCGTCTTGGAAATGACCATCACACTGGTCCCTGAAATCTTCCTTGACTGGTCCCG
CCCTACCTCTGAGATGCTGCTTCGGCGTCTTGCACAGCTGCTGAACCAGGTGCTGAACCGGGTG
ACAGCTGAGAGGAACCTGTTTGACCGTGTAGTCACGCTGCGGCTACCTGGGCTGGAGAGTGTGG
ACCACTACCCTATCTTGGTGGCAGTGACCGGCATCCTGGTACGCCTCCTGGCACACGGTCCATC
CTCAGAGACAGAGCAAGCCACATCTGTGCTCCTGGCTGATCCCTGCTTCCAGCTCCGCTCTATA
CGCTATCTCCTGGGGCAGCCAGAGCCCCTAGCACCTGGCTCCGCCTTGCCTGCCCCTGACCGGA
AACGCTTCTCTCTACAGAGCTATGCAGATTACATCAGTGCTGAGGAGCTGGCCCAGGTGGAACG
GATGCTGGCTCACCTGACCGCGGCATCGGCCCAGGCAGCAGCTGCCTCCCTGCCCACCAATGAG
GAGGACCTCTGCCCAATCTGCTATGCCCACCCCATCTCTGCTGTGTTCCAGCCTTGTGGTCACA
AATCCTGCAAAGCCTGCATCAACCAGCATCTGATGAACAACAAGGACTGCTTCTTCTGCAAAGC
CACCATTGTATCTGTAGAGGACTGGGACAAGGCAGCCAGCACAAGTGCCACATCCTCAGCTGCC
TAGGCTGTCCTGGAAACCCACCATCAGACGCAGTCCGAGTCCTATTTATGAGCTCCCTTGGCCC
TGTCCCCATCACCCTCGCTCTTACCACTCCCACCCATCTGCCTGTGTGTGCATAGCCTCACTGG
TGGGAGGGAGCCTGAGTCCAGTCCAGGCCACAGTGAGCATTAAATTATTATTCCCTTCA

hide sequence

RefSeq Acc Id:

XM_006243693 ⟹ XP_006243755

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,618,776 - 117,646,275 (-)	NCBI
mRatBN7.2	8	108,740,176 - 108,767,686 (-)	NCBI
Rnor_6.0	8	116,829,050 - 116,856,682 (-)	NCBI
Rnor_5.0	8	116,183,372 - 116,211,131 (-)	NCBI

Sequence:

show sequence

CGGTCTGTGCATATGCGCGTGCGCGGCTGGAGCGGCGCGCGAGCGGGCACGCGGTTTGGCCCTG
GACGGGTGCCGTAGCTGAAAAGCTGGGCGGATGTTGTGAGCCGGTCGCGGAGGCTGAGGCCGGG
GGTGAGTGAGAGGCGGCCTGGCTACGAGCCGGGCGGGTCCGGTGACTCCCTTCGAGGCCCCTGG
CCGATCCAGTGCGACAGTGCCGCGGCCTGCGGTATAGGGCTCCCAGCGGGAGCTGGCCTGACAG
GTCCTATGGAGCTTGGGGCCAAGTAGGGGCGACCTGGGGGAGCATGCGCTGCCCTTGACATCCT
TGGCCACCCAGACTTAGTCGGTTCGGTTTCGAGCCTGGATCTCTTAGAAGGGCTGGGCAGTAAT
GGCGTGGCTGGGAGCCCTGGGGCAGACGCAGGTTCCGCCTCTAAATCCTCTACACTTGACACCC
AGAGTGTGTGTCTGGAAGGTTGACTTCCAGTTCTTACTAACTGCGTCCAATAAGTCCAGCAATT
GTTGCAATATAAGAGGGACTGGTTGTGGATGTCCATCGAGGGCCCCCGGAGGGCGGCACAGCGG
CAGAATCACCTTCCCGAGCGAGCCTGGACTGAGGTCTGTGTGGGCCTTTGACTAGCCTGGAGTA
GACACTCTGCATCTGGCTCAGCCTCCAGGACCAGTGACTGCCGATGAGCGGTGAAAGATGACGT
CCAAGGGGGCTGCCATGTCTTTCTCCCGAAAGAGCTATAGGTTGACCTCAGATGCTGAGAAGTC
CAGGGTCACAGGCATTGTGCAAGAGAAGCTACTGAGCGACTACCTGTACCGGATCTTTTCCTCT
CCTGACCATGGGACCCCTGCAGCCACCAGCAGGAAACCGCTGAACTTCCATAACCTGCCAGAGC
ATGTGGACCAGCTGCTGCAGGTGGACGACGAAGAGAGCCAGGGACAAGTTGAAGGCCGACTTGG
CCCATCTACTGTGGTCCTAGACCACACAGGAGGCTTTGAGGGGCTTCTCCTTGTGGACGATGAC
CTCCTGGGGGTGATTGGACACAGCAACTTTGGCACTATCCGTTCTTCCACATGTGTGTACAAAG
GGAAATGGGTCTACGAGGTGCTCATCTCCTCCCAGGGGCTCATGCAGATCGGCTGGTGTACCAT
CAACTGCCGCTTTAATCAGGAGGAAGGGGTTGGAGATACACACAACTCCTATGCCTATGACGGC
AACCGAGTGCGCAAGTGGAACGTGACGACGACGAACTACGGCAAGGCATGGGCAGCGGGGGACA
TTGTGAGCTGCCTCATTGATCTGGATGATGGTACTCTGTCCTTTTGCCTGAATGGTGTGTCACT
GGGCACTGCCTTTGAGAACCTTTCCAGGGGCCTAGGAATGGCGTACTTCCCAGCCATCAGCCTG
TCGTTCAAGGAGTCTGTGGCATTCAACTTTGGCAGCCGACCTTTGCGCTACCCAGTTGCGGGCT
TCCGGCCCCTGCAGGACCCTCCCTTTGCTGACCTGGTCCGGGCACAGAGGTTGCTGGGCTGCTT
CCAGACAGTGCTAAGTGTAGAGCTGGACCCTGTGGAAGGGCGGTTGGTGGAGAAGGAGAGCTCT
GAGTGGCAGCTGCACGGGCAGCCCACTGTCCTCCTCACGCTGGCCCACATCTTCCATCACTTTG
CACCACTGCTGCGCAAGGTGTACCTAGTGGAGGCTGTGCTCATGAGCTTCCTGCTGGGCATTGT
GGAGAAGGGCACCCCTGAGCAGGCCCAGTCCGTGGTACACCAGATCTTGGACCTCTTGTGGCTC
TTCATGGAGGACTATGAAGTTCAGGATTGCCTCAAGCAGTTGATGATGTCTCTGCTACGTCTCT
ACCGATTCTCGCCCATTGTTCCGGACCTGGGTCTACAGATCCACTACCTGCGCCTCACTATGGC
CGTCCTGAGACATGAGAAGTCCCGCAAGTTCCTGCTTAGCAATGTCCTTTTTGACATGCTCCGG
TCCGTGGTCTTCTTTTACATTAAGAGTCCCCTGCGTGTGGAGGAAGCTGGCCTGAAGGAACTCA
TCCCCACCACCTGGTGGCCCCATCGCTCCAGCAGGGAGGGCAGAGACGGTCAGGAAGCAAAGGA
GGAGACCACGGAAGAGCGGCAGCGGAGGAGAGCTTACGAGCGTGGCTGCCAAAGACTCAAGAAA
CGCATTGAAGTGGTGGAAGAACTGCAGGTCCAGATCCTGAAGCTGCTGTTGGACAACAAAGATG
ACAATGGGGGTGAAGCTTCTCGGTACATCTTTCTGACAAAATTCCGAAAGTTCCTGCAGGAGAA
TGCCAGTGGCCGGGGGAACACACCCGTGCTCTGCCCCCCTGAGTACATGGTCTGTTTCCTACAC
CGGCTGGTGTCTGCCTTGCGTTTCTATTGGGATGAATACAAAGCTTCCAACCCCCGTGCTTCCT
TTAGCGATGAGGCTTATATCCCGCCTCAGATCTTCTATAATGGCAAGGTGGACTACTTCGACCT
TCAGCGCCTCGGGGGCCTCCTCTCACACCTTCGAAAGACCCTTAAAGATGACCTTGCTTCCAAA
GCCAATATCGTGATTGATCCCCTGGAGCTCCAGGCAGCCACCATGGATGACCTGGATGAGGATG
AAGAGCCGGCCCCCACAGCAGCCCAGCGTCCCGTGCAAGCACTGGCCATAGGAGGGGCCCTGCC
CCTGCCCCGGCCTGGCTGGCTAAGTTCTCCAACCCTGGGCCGAGCCAACCGTTTCCTCAGCACA
GCAGCCGTGAGCCTCATGACCCCACGGCGGCTTCTGAGCACCATGGAGAAAGTAAAAGTTCGCT
CCCTGAATGTGGAACAGAGGACCCGTGAGGACATTGAGGGCAGCCACTGGAATGAGGGTCTGCT
GTTGGGGAGGCCCCCTGAAGAGCCTGAGCGGCCGCTTACGGAAAACTCGCTGTTGGAAGTTCTG
GATGGCACAGTCATGATGTACAGTCTGAGCGTTCACCAGCAGCTGGGCAAGATGGTGGGTGTGT
CTGATGATGTCAACGAGTATGCAATGGCCCTGAGAGACACCGAGGACAAGCTACGTCGGTGCCC
TAAGAGGAGGAAGGATATCCTTGCAGAGTTGACCAAGAGCCAGAAGGTTTTCTCAGAAAAGCTG
GACCACCTGAGCCGCAGGCTTGCCTGGGTCCATGCCACCGTCTACTCACAGGAGAAAATGCTGG
ATATCTACTGGTTACTGCGTGTCTGCCTACAGACCATTGAGCATGGGGATCGCACAGGATCTCT
CTTTGCCTTCATGCCCGAGTTTTACCTAAGTGTGGCTATCAACAGCTACAGTGCCCTTAAGAAT
TATTTTGGCCCTGTGCACAGCATGGAGGAGCTCCCAGGCTATGAAGAGACCCTGACCCGCTTAG
CTGCCATCCTCGCCAAACACTTTGCTGACCCTCGAATAGTAGGCACTGACATTCGAGACTCGCT
GATGCAGGCCCTGGCCAGTTACGTGTGTTACCCACATTCCCTGCGGGCCGTGGAACGGATCCCC
GAGGAGCAGCGCATCGCCATGGTGAGGAACCTTTTGGCCCCCTATGAGCAACGACCCTGGGCCC
AGACCAACTGGATCCTGGTGCGGCTTTGGAGGGGCTGTGGTTTTGGGTACCGCTACACACGGCT
GCCACATCTGCTGAAAACCAAGCCAGAGGATGCTAATTTGCCAAGCCTCCAAAAGCCCTGCCCT
TCAACCTTGCTACAGCAGCACATGGCAGACCTTCTGCGACAAGGTTCTGATGTGGCACCAAGCT
TCCTCAACAGCGTCCTTAACCAGCTCAACTGGGCCTTCTCTGAGTTCATCGGCATGATCCAGGA
GATTCAACAGGCTGCTGAACGCCTAGAGCGAAACTTTGTGGACAGCCGGCAGCTCAAGGTCTGT
GCCACCTGCTTCGACCTGTCAGTCAGCTTGCTGCGCGTCTTGGAAATGACCATCACACTGGTCC
CTGAAATCTTCCTTGACTGGTCCCGCCCTACCTCTGAGATGCTGCTTCGGCGTCTTGCACAGCT
GCTGAACCAGGTGCTGAACCGGGTGACAGCTGAGAGGAACCTGTTTGACCGTGTAGTCACGCTG
CGGCTACCTGGGCTGGAGAGTGTGGACCACTACCCTATCTTGGTGGCAGTGACCGGCATCCTGG
TACGCCTCCTGGCACACGGTCCATCCTCAGAGACAGAGCAAGCCACATCTGTGCTCCTGGCTGA
TCCCTGCTTCCAGCTCCGCTCTATACGCTATCTCCTGGGGCAGCCAGAGCCCCTAGCACCTGGC
TCCGCCTTGCCTGCCCCTGACCGGAAACGCTTCTCTCTACAGAGCTATGCAGATTACATCAGTG
CTGAGGAGCTGGCCCAGGTGGAACGGATGCTGGCTCACCTGACCGCGGCATCGGCCCAGGCAGC
AGCTGCCTCCCTGCCCACCAATGAGGAGGACCTCTGCCCAATCTGCTATGCCCACCCCATCTCT
GCTGTGTTCCAGCCTTGTGGTCACAAATCCTGCAAAGCCTGCATCAACCAGCATCTGATGAACA
ACAAGGACTGCTTCTTCTGCAAAGCCACCATTGTATCTGTAGAGGACTGGGACAAGGCAGCCAG
CACAAGTGCCACATCCTCAGCTGCCTAGGCTGTCCTGGAAACCCACCATCAGACGCAGTCCGAG
TCCTATTTATGAGCTCCCTTGGCCCTGTCCCCATCACCCTCGCTCTTACCACTCCCACCCATCT
GCCTGTGTGTGCATAGCCTCACTGGTGGGAGGGAGCCTGAGTCCAGTCCAGGCCACAGTGAGCA
TTAAATTATTATTCCCTTCA

hide sequence

RefSeq Acc Id:

XM_006243695 ⟹ XP_006243757

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,618,776 - 117,646,400 (-)	NCBI
mRatBN7.2	8	108,740,176 - 108,767,815 (-)	NCBI
Rnor_6.0	8	116,829,050 - 116,856,682 (-)	NCBI
Rnor_5.0	8	116,183,372 - 116,211,131 (-)	NCBI

Sequence:

show sequence

CGGTCTGTGCATATGCGCGTGCGCGGCTGGAGCGGCGCGCGAGCGGGCACGCGGTTTGGCCCTG
GACGGGTGCCGTAGCTGAAAAGCTGGGCGGATGTTGTGAGCCGGTCGCGGAGGCTGAGGCCGGG
GCCTCCAGGACCAGTGACTGCCGATGAGCGGTGAAAGATGACGTCCAAGGGGGCTGCCATGTCT
TTCTCCCGAAAGAGCTATAGGTTGACCTCAGATGCTGAGAAGTCCAGGGTCACAGGCATTGTGC
AAGAGAAGCTACTGAGCGACTACCTGTACCGGATCTTTTCCTCTCCTGACCATGGGACCCCTGC
AGCCACCAGCAGGAAACCGCTGAACTTCCATAACCTGCCAGAGCATGTGGACCAGCTGCTGCAG
GTGGACGACGAAGAGAGCCAGGGACAAGTTGAAGGCCGACTTGGCCCATCTACTGTGGTCCTAG
ACCACACAGGAGGCTTTGAGGGGCTTCTCCTTGTGGACGATGACCTCCTGGGGGTGATTGGACA
CAGCAACTTTGGCACTATCCGTTCTTCCACATGTGTGTACAAAGGGAAATGGGTCTACGAGGTG
CTCATCTCCTCCCAGGGGCTCATGCAGATCGGCTGGTGTACCATCAACTGCCGCTTTAATCAGG
AGGAAGGGGTTGGAGATACACACAACTCCTATGCCTATGACGGCAACCGAGTGCGCAAGTGGAA
CGTGACGACGACGAACTACGGCAAGGCATGGGCAGCGGGGGACATTGTGAGCTGCCTCATTGAT
CTGGATGATGGTACTCTGTCCTTTTGCCTGAATGGTGTGTCACTGGGCACTGCCTTTGAGAACC
TTTCCAGGGGCCTAGGAATGGCGTACTTCCCAGCCATCAGCCTGTCGTTCAAGGAGTCTGTGGC
ATTCAACTTTGGCAGCCGACCTTTGCGCTACCCAGTTGCGGGCTTCCGGCCCCTGCAGGACCCT
CCCTTTGCTGACCTGGTCCGGGCACAGAGGTTGCTGGGCTGCTTCCAGACAGTGCTAAGTGTAG
AGCTGGACCCTGTGGAAGGGCGGTTGGTGGAGAAGGAGAGCTCTGAGTGGCAGCTGCACGGGCA
GCCCACTGTCCTCCTCACGCTGGCCCACATCTTCCATCACTTTGCACCACTGCTGCGCAAGGTG
TACCTAGTGGAGGCTGTGCTCATGAGCTTCCTGCTGGGCATTGTGGAGAAGGGCACCCCTGAGC
AGGCCCAGTCCGTGGTACACCAGATCTTGGACCTCTTGTGGCTCTTCATGGAGGACTATGAAGT
TCAGGATTGCCTCAAGCAGTTGATGATGTCTCTGCTACGTCTCTACCGATTCTCGCCCATTGTT
CCGGACCTGGGTCTACAGATCCACTACCTGCGCCTCACTATGGCCGTCCTGAGACATGAGAAGT
CCCGCAAGTTCCTGCTTAGCAATGTCCTTTTTGACATGCTCCGGTCCGTGGTCTTCTTTTACAT
TAAGAGTCCCCTGCGTGTGGAGGAAGCTGGCCTGAAGGAACTCATCCCCACCACCTGGTGGCCC
CATCGCTCCAGCAGGGAGGGCAGAGACGGTCAGGAAGCAAAGGAGGAGACCACGGAAGAGCGGC
AGCGGAGGAGAGCTTACGAGCGTGGCTGCCAAAGACTCAAGAAACGCATTGAAGTGGTGGAAGA
ACTGCAGGTCCAGATCCTGAAGCTGCTGTTGGACAACAAAGATGACAATGGGGGTGAAGCTTCT
CGGTACATCTTTCTGACAAAATTCCGAAAGTTCCTGCAGGAGAATGCCAGTGGCCGGGGGAACA
CACCCGTGCTCTGCCCCCCTGAGTACATGGTCTGTTTCCTACACCGGCTGGTGTCTGCCTTGCG
TTTCTATTGGGATGAATACAAAGCTTCCAACCCCCGTGCTTCCTTTAGCGATGAGGCTTATATC
CCGCCTCAGATCTTCTATAATGGCAAGGTGGACTACTTCGACCTTCAGCGCCTCGGGGGCCTCC
TCTCACACCTTCGAAAGACCCTTAAAGATGACCTTGCTTCCAAAGCCAATATCGTGATTGATCC
CCTGGAGCTCCAGGCAGCCACCATGGATGACCTGGATGAGGATGAAGAGCCGGCCCCCACAGCA
GCCCAGCGTCCCGTGCAAGCACTGGCCATAGGAGGGGCCCTGCCCCTGCCCCGGCCTGGCTGGC
TAAGTTCTCCAACCCTGGGCCGAGCCAACCGTTTCCTCAGCACAGCAGCCGTGAGCCTCATGAC
CCCACGGCGGCTTCTGAGCACCATGGAGAAAGTAAAAGTTCGCTCCCTGAATGTGGAACAGAGG
ACCCGTGAGGACATTGAGGGCAGCCACTGGAATGAGGGTCTGCTGTTGGGGAGGCCCCCTGAAG
AGCCTGAGCGGCCGCTTACGGAAAACTCGCTGTTGGAAGTTCTGGATGGCACAGTCATGATGTA
CAGTCTGAGCGTTCACCAGCAGCTGGGCAAGATGGTGGGTGTGTCTGATGATGTCAACGAGTAT
GCAATGGCCCTGAGAGACACCGAGGACAAGCTACGTCGGTGCCCTAAGAGGAGGAAGGATATCC
TTGCAGAGTTGACCAAGAGCCAGAAGGTTTTCTCAGAAAAGCTGGACCACCTGAGCCGCAGGCT
TGCCTGGGTCCATGCCACCGTCTACTCACAGGAGAAAATGCTGGATATCTACTGGTTACTGCGT
GTCTGCCTACAGACCATTGAGCATGGGGATCGCACAGGATCTCTCTTTGCCTTCATGCCCGAGT
TTTACCTAAGTGTGGCTATCAACAGCTACAGTGCCCTTAAGAATTATTTTGGCCCTGTGCACAG
CATGGAGGAGCTCCCAGGCTATGAAGAGACCCTGACCCGCTTAGCTGCCATCCTCGCCAAACAC
TTTGCTGACCCTCGAATAGTAGGCACTGACATTCGAGACTCGCTGATGCAGGCCCTGGCCAGTT
ACGTGTGTTACCCACATTCCCTGCGGGCCGTGGAACGGATCCCCGAGGAGCAGCGCATCGCCAT
GGTGAGGAACCTTTTGGCCCCCTATGAGCAACGACCCTGGGCCCAGACCAACTGGATCCTGGTG
CGGCTTTGGAGGGGCTGTGGTTTTGGGTACCGCTACACACGGCTGCCACATCTGCTGAAAACCA
AGCCAGAGGATGCTAATTTGCCAAGCCTCCAAAAGCCCTGCCCTTCAACCTTGCTACAGCAGCA
CATGGCAGACCTTCTGCGACAAGGTTCTGATGTGGCACCAAGCTTCCTCAACAGCGTCCTTAAC
CAGCTCAACTGGGCCTTCTCTGAGTTCATCGGCATGATCCAGGAGATTCAACAGGCTGCTGAAC
GCCTAGAGCGAAACTTTGTGGACAGCCGGCAGCTCAAGGTCTGTGCCACCTGCTTCGACCTGTC
AGTCAGCTTGCTGCGCGTCTTGGAAATGACCATCACACTGGTCCCTGAAATCTTCCTTGACTGG
TCCCGCCCTACCTCTGAGATGCTGCTTCGGCGTCTTGCACAGCTGCTGAACCAGGTGCTGAACC
GGGTGACAGCTGAGAGGAACCTGTTTGACCGTGTAGTCACGCTGCGGCTACCTGGGCTGGAGAG
TGTGGACCACTACCCTATCTTGGTGGCAGTGACCGGCATCCTGGTACGCCTCCTGGCACACGGT
CCATCCTCAGAGACAGAGCAAGCCACATCTGTGCTCCTGGCTGATCCCTGCTTCCAGCTCCGCT
CTATACGCTATCTCCTGGGGCAGCCAGAGCCCCTAGCACCTGGCTCCGCCTTGCCTGCCCCTGA
CCGGAAACGCTTCTCTCTACAGAGCTATGCAGATTACATCAGTGCTGAGGAGCTGGCCCAGGTG
GAACGGATGCTGGCTCACCTGACCGCGGCATCGGCCCAGGCAGCAGCTGCCTCCCTGCCCACCA
ATGAGGAGGACCTCTGCCCAATCTGCTATGCCCACCCCATCTCTGCTGTGTTCCAGCCTTGTGG
TCACAAATCCTGCAAAGCCTGCATCAACCAGCATCTGATGAACAACAAGGACTGCTTCTTCTGC
AAAGCCACCATTGTATCTGTAGAGGACTGGGACAAGGCAGCCAGCACAAGTGCCACATCCTCAG
CTGCCTAGGCTGTCCTGGAAACCCACCATCAGACGCAGTCCGAGTCCTATTTATGAGCTCCCTT
GGCCCTGTCCCCATCACCCTCGCTCTTACCACTCCCACCCATCTGCCTGTGTGTGCATAGCCTC
ACTGGTGGGAGGGAGCCTGAGTCCAGTCCAGGCCACAGTGAGCATTAAATTATTATTCCCTTCA

hide sequence

RefSeq Acc Id:

XM_063264705 ⟹ XP_063120775

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,618,776 - 117,646,322 (-)	NCBI

RefSeq Acc Id:

XM_063264706 ⟹ XP_063120776

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,623,194 - 117,646,278 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178509	(Get FASTA)	NCBI Sequence Viewer
	XP_006243753	(Get FASTA)	NCBI Sequence Viewer
	XP_006243755	(Get FASTA)	NCBI Sequence Viewer
	XP_006243757	(Get FASTA)	NCBI Sequence Viewer
	XP_063120775	(Get FASTA)	NCBI Sequence Viewer
	XP_063120776	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI28751	(Get FASTA)	NCBI Sequence Viewer
	AAI28774	(Get FASTA)	NCBI Sequence Viewer
	D3ZXK7	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000041545
	ENSRNOP00000110165

RefSeq Acc Id:

NP_001178509 ⟸ NM_001191580

- UniProtKB:

D3ZXK7 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MTSKGAAMSFSRKSYRLTSDAEKSRVTGIVQEKLLSDYLYRIFSSPDHGTPAATSRKPLNFHNL
PEHVDQLLQVDDEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSSTCV
YKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAA
GDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKESVAFNFGSRPLRYPV
AGFRPLQDPPFADLVRAQRLLGCFQTVLSVELDPVEGRLVEKESSEWQLHGQPTVLLTLAHIFH
HFAPLLRKVYLVEAVLMSFLLGIVEKGTPEQAQSVVHQILDLLWLFMEDYEVQDCLKQLMMSLL
RLYRFSPIVPDLGLQIHYLRLTMAVLRHEKSRKFLLSNVLFDMLRSVVFFYIKSPLRVEEAGLK
ELIPTTWWPHRSSREGRDGQEAKEETTEERQRRRAYERGCQRLKKRIEVVEELQVQILKLLLDN
KDDNGGEASRYIFLTKFRKFLQENASGRGNTPVLCPPEYMVCFLHRLVSALRFYWDEYKASNPR
ASFSDEAYIPPQIFYNGKVDYFDLQRLGGLLSHLRKTLKDDLASKANIVIDPLELQAATMDDLD
EDEEPAPTAAQRPVQALAIGGALPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRLLSTMEKVK
VRSLNVEQRTREDIEGSHWNEGLLLGRPPEEPERPLTENSLLEVLDGTVMMYSLSVHQQLGKMV
GVSDDVNEYAMALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEK
MLDIYWLLRVCLQTIEHGDRTGSLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELPGYEETLT
RLAAILAKHFADPRIVGTDIRDSLMQALASYVCYPHSLRAVERIPEEQRIAMVRNLLAPYEQRP
WAQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSTLLQQHMADLLRQGSDVA
PSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVSLLRVLEMTIT
LVPEIFLDWSRPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGLESVDHYPILVAVTG
ILVRLLAHGPSSETEQATSVLLADPCFQLRSIRYLLGQPEPLAPGSALPAPDRKRFSLQSYADY
ISAEELAQVERMLAHLTAASAQAAAASLPTNEEDLCPICYAHPISAVFQPCGHKSCKACINQHL
MNNKDCFFCKATIVSVEDWDKAASTSATSSAA

hide sequence

RefSeq Acc Id:	XP_006243753 ⟸ XM_006243691
- Peptide Label:	isoform X1
- UniProtKB:	D3ZXK7 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTSKGAAMSFSRKSYRLTSDAEKSRVTGIVQEKLLSDYLYRIFSSPDHGTPAATSRKPLNFHNL PEHVDQLLQVDDEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSSTCV YKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAA GDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKESVAFNFGSRPLRYPV AGFRPLQDPPFADLVRAQRLLGCFQTVLSVELDPVEGRLVEKESSEWQLHGQPTVLLTLAHIFH HFAPLLRKVYLVEAVLMSFLLGIVEKGTPEQAQSVVHQILDLLWLFMEDYEVQDCLKQLMMSLL RLYRFSPIVPDLGLQIHYLRLTMAVLRHEKSRKFLLSNVLFDMLRSVVFFYIKSPLRVEEAGLK ELIPTTWWPHRSSREGRDGQEAKEETTEERQRRRAYERGCQRLKKRIEVVEELQVQILKLLLDN KDDNGGEASRYIFLTKFRKFLQENASGRGNTPVLCPPEYMVCFLHRLVSALRFYWDEYKASNPR ASFSDEAYIPPQIFYNGKVDYFDLQRLGGLLSHLRKTLKDDLASKANIVIDPLELQAATMDDLD EDEEPAPTAAQRPVQALAIGGALPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRLLSTMEKVK VRSLNVEQRTREDIEGSHWNEGLLLGRPPEEPERPLTENSLLEVLDGTVMMYSLSVHQQLGKMV GVSDDVNEYAMALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEK MLDIYWLLRVCLQTIEHGDRTGSLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELPGYEETLT RLAAILAKHFADPRIVGTDIRDSLMQALASYVCYPHSLRAVERIPEEQRIAMVRNLLAPYEQRP WAQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSTLLQQHMADLLRQGSDVA PSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVSLLRVLEMTIT LVPEIFLDWSRPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGLESVDHYPILVAVTG ILVRLLAHGPSSETEQATSVLLADPCFQLRSIRYLLGQPEPLAPGSALPAPDRKRFSLQSYADY ISAEELAQVERMLAHLTAASAQAAAASLPTNEEDLCPICYAHPISAVFQPCGHKSCKACINQHL MNNKDCFFCKATIVSVEDWDKAASTSATSSAA hide sequence

RefSeq Acc Id:	XP_006243757 ⟸ XM_006243695
- Peptide Label:	isoform X1
- UniProtKB:	D3ZXK7 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTSKGAAMSFSRKSYRLTSDAEKSRVTGIVQEKLLSDYLYRIFSSPDHGTPAATSRKPLNFHNL PEHVDQLLQVDDEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSSTCV YKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAA GDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKESVAFNFGSRPLRYPV AGFRPLQDPPFADLVRAQRLLGCFQTVLSVELDPVEGRLVEKESSEWQLHGQPTVLLTLAHIFH HFAPLLRKVYLVEAVLMSFLLGIVEKGTPEQAQSVVHQILDLLWLFMEDYEVQDCLKQLMMSLL RLYRFSPIVPDLGLQIHYLRLTMAVLRHEKSRKFLLSNVLFDMLRSVVFFYIKSPLRVEEAGLK ELIPTTWWPHRSSREGRDGQEAKEETTEERQRRRAYERGCQRLKKRIEVVEELQVQILKLLLDN KDDNGGEASRYIFLTKFRKFLQENASGRGNTPVLCPPEYMVCFLHRLVSALRFYWDEYKASNPR ASFSDEAYIPPQIFYNGKVDYFDLQRLGGLLSHLRKTLKDDLASKANIVIDPLELQAATMDDLD EDEEPAPTAAQRPVQALAIGGALPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRLLSTMEKVK VRSLNVEQRTREDIEGSHWNEGLLLGRPPEEPERPLTENSLLEVLDGTVMMYSLSVHQQLGKMV GVSDDVNEYAMALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEK MLDIYWLLRVCLQTIEHGDRTGSLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELPGYEETLT RLAAILAKHFADPRIVGTDIRDSLMQALASYVCYPHSLRAVERIPEEQRIAMVRNLLAPYEQRP WAQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSTLLQQHMADLLRQGSDVA PSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVSLLRVLEMTIT LVPEIFLDWSRPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGLESVDHYPILVAVTG ILVRLLAHGPSSETEQATSVLLADPCFQLRSIRYLLGQPEPLAPGSALPAPDRKRFSLQSYADY ISAEELAQVERMLAHLTAASAQAAAASLPTNEEDLCPICYAHPISAVFQPCGHKSCKACINQHL MNNKDCFFCKATIVSVEDWDKAASTSATSSAA hide sequence

RefSeq Acc Id:	XP_006243755 ⟸ XM_006243693
- Peptide Label:	isoform X1
- UniProtKB:	D3ZXK7 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTSKGAAMSFSRKSYRLTSDAEKSRVTGIVQEKLLSDYLYRIFSSPDHGTPAATSRKPLNFHNL PEHVDQLLQVDDEESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSSTCV YKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAA GDIVSCLIDLDDGTLSFCLNGVSLGTAFENLSRGLGMAYFPAISLSFKESVAFNFGSRPLRYPV AGFRPLQDPPFADLVRAQRLLGCFQTVLSVELDPVEGRLVEKESSEWQLHGQPTVLLTLAHIFH HFAPLLRKVYLVEAVLMSFLLGIVEKGTPEQAQSVVHQILDLLWLFMEDYEVQDCLKQLMMSLL RLYRFSPIVPDLGLQIHYLRLTMAVLRHEKSRKFLLSNVLFDMLRSVVFFYIKSPLRVEEAGLK ELIPTTWWPHRSSREGRDGQEAKEETTEERQRRRAYERGCQRLKKRIEVVEELQVQILKLLLDN KDDNGGEASRYIFLTKFRKFLQENASGRGNTPVLCPPEYMVCFLHRLVSALRFYWDEYKASNPR ASFSDEAYIPPQIFYNGKVDYFDLQRLGGLLSHLRKTLKDDLASKANIVIDPLELQAATMDDLD EDEEPAPTAAQRPVQALAIGGALPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRLLSTMEKVK VRSLNVEQRTREDIEGSHWNEGLLLGRPPEEPERPLTENSLLEVLDGTVMMYSLSVHQQLGKMV GVSDDVNEYAMALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEK MLDIYWLLRVCLQTIEHGDRTGSLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELPGYEETLT RLAAILAKHFADPRIVGTDIRDSLMQALASYVCYPHSLRAVERIPEEQRIAMVRNLLAPYEQRP WAQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSTLLQQHMADLLRQGSDVA PSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVSLLRVLEMTIT LVPEIFLDWSRPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGLESVDHYPILVAVTG ILVRLLAHGPSSETEQATSVLLADPCFQLRSIRYLLGQPEPLAPGSALPAPDRKRFSLQSYADY ISAEELAQVERMLAHLTAASAQAAAASLPTNEEDLCPICYAHPISAVFQPCGHKSCKACINQHL MNNKDCFFCKATIVSVEDWDKAASTSATSSAA hide sequence

Ensembl Acc Id:

ENSRNOP00000041545 ⟸ ENSRNOT00000043825

Ensembl Acc Id:

ENSRNOP00000049507 ⟸ ENSRNOT00000050344

RefSeq Acc Id:	XP_063120775 ⟸ XM_063264705
- Peptide Label:	isoform X2
- UniProtKB:	D3ZXK7 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063120776 ⟸ XM_063264706
- Peptide Label:	isoform X3
- UniProtKB:	F1LMI7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000110165 ⟸ ENSRNOT00000159612

Protein Domains

B30.2/SPRY

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZXK7-F1-model_v2	AlphaFold	D3ZXK7	1-1318	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696288

Promoter ID:

EPDNEW_R6813

Type:

initiation region

Name:

Rnf123_1

Description:

ring finger protein 123

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	116,856,547 - 116,856,607	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2301394	AgrOrtholog
BioCyc Gene	G2FUF-29160	BioCyc
Ensembl Genes	ENSRNOG00000033378	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000043825	ENTREZGENE
	ENSRNOT00000159612	ENTREZGENE
Gene3D-CATH	2.60.120.920	UniProtKB/Swiss-Prot
	3.30.40.10	UniProtKB/Swiss-Prot
InterPro	B30.2/SPRY	UniProtKB/Swiss-Prot
	B30.2/SPRY_sf	UniProtKB/Swiss-Prot
	ConA-like_dom_sf	UniProtKB/Swiss-Prot
	RNF123/RSPRY1-like	UniProtKB/Swiss-Prot
	SPRY_dom	UniProtKB/Swiss-Prot
	SPRY_RNF123	UniProtKB/Swiss-Prot
	Znf_RING	UniProtKB/Swiss-Prot
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot
NCBI Gene	100190936	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF123	UniProtKB/Swiss-Prot
	PTHR13363	UniProtKB/Swiss-Prot
Pfam	SPRY	UniProtKB/Swiss-Prot
	zf-C3HC4_3	UniProtKB/Swiss-Prot
PhenoGen	Rnf123	PhenoGen
PROSITE	B302_SPRY	UniProtKB/Swiss-Prot
	ZF_RING_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000033378	RatGTEx
SMART	RING	UniProtKB/Swiss-Prot
	SPRY	UniProtKB/Swiss-Prot
Superfamily-SCOP	RING/U-box	UniProtKB/Swiss-Prot
	SSF49899	UniProtKB/Swiss-Prot
UniProt	A0ABK0M0E6_RAT	UniProtKB/TrEMBL
	D3ZXK7	ENTREZGENE
	F1LMI7	ENTREZGENE, UniProtKB/TrEMBL
	RN123_RAT	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-11	Rnf123	ring finger protein 123			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar