Camsap3 (calmodulin regulated spectrin-associated protein family, member 3) - Rat Genome Database

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Gene: Camsap3 (calmodulin regulated spectrin-associated protein family, member 3) Rattus norvegicus
Analyze
Symbol: Camsap3
Name: calmodulin regulated spectrin-associated protein family, member 3
RGD ID: 1597412
Description: Predicted to enable actin filament binding activity and microtubule minus-end binding activity. Predicted to be involved in several processes, including microtubule cytoskeleton organization; regulation of microtubule polymerization or depolymerization; and zonula adherens maintenance. Predicted to act upstream of or within in utero embryonic development. Predicted to be located in cytoskeleton; motile cilium; and zonula adherens. Predicted to colocalize with microtubule minus-end. Orthologous to human CAMSAP3 (calmodulin regulated spectrin associated protein family member 3); PARTICIPATES IN E-cadherin signaling pathway; INTERACTS WITH bisphenol A; Brodifacoum; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calmodulin-regulated spectrin-associated protein 3; hypothetical protein LOC689074; LOC288373; LOC689074; RGD1307246; similar to CG33130-PA; similar to Protein KIAA1543; uncharacterized protein LOC689074
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8126,440,959 - 6,464,582 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl126,441,152 - 6,464,582 (+)EnsemblGRCr8
mRatBN7.2121,643,062 - 1,666,685 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,643,251 - 1,666,685 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx122,308,318 - 2,333,214 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0122,931,892 - 2,956,786 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,703,844 - 1,727,718 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd127,239,962 - 7,264,171 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive127,641,518 - 7,666,167 (+)NCBILyon_Normotensive
Lyon_Hypertensive127,029,656 - 7,053,867 (-)NCBILyon_Hypertensive
F344_StmMcwi1217,108,853 - 17,133,062 (+)NCBIF344_StmMcwi
Rnor_6.0122,133,935 - 2,157,403 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,134,022 - 2,157,403 (+)Ensemblrn6Rnor6.0
Rnor_5.0124,296,348 - 4,319,735 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4122,546,678 - 2,572,951 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera123,498,429 - 3,522,426 (+)NCBICelera
Cytogenetic Map12p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axoneme  (IEA,ISO)
centrosome  (IEA,ISO)
ciliary basal body  (IEA,ISO)
cytoplasm  (IEA,ISO,ISS)
cytoskeleton  (IEA)
microtubule  (IEA)
microtubule cytoskeleton  (IEA,ISO)
microtubule minus-end  (IBA,IEA,ISO)
motile cilium  (IEA,ISO)
zonula adherens  (IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:19041755   PMID:19389623   PMID:23169647   PMID:24486153   PMID:24706919   PMID:26715742   PMID:27693509   PMID:27802168   PMID:27996060   PMID:28089391   PMID:28860385  


Genomics

Comparative Map Data
Camsap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8126,440,959 - 6,464,582 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl126,441,152 - 6,464,582 (+)EnsemblGRCr8
mRatBN7.2121,643,062 - 1,666,685 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,643,251 - 1,666,685 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx122,308,318 - 2,333,214 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0122,931,892 - 2,956,786 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,703,844 - 1,727,718 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd127,239,962 - 7,264,171 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive127,641,518 - 7,666,167 (+)NCBILyon_Normotensive
Lyon_Hypertensive127,029,656 - 7,053,867 (-)NCBILyon_Hypertensive
F344_StmMcwi1217,108,853 - 17,133,062 (+)NCBIF344_StmMcwi
Rnor_6.0122,133,935 - 2,157,403 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,134,022 - 2,157,403 (+)Ensemblrn6Rnor6.0
Rnor_5.0124,296,348 - 4,319,735 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4122,546,678 - 2,572,951 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera123,498,429 - 3,522,426 (+)NCBICelera
Cytogenetic Map12p12NCBI
CAMSAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38197,595,863 - 7,618,304 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl197,595,826 - 7,618,352 (+)Ensemblhg38GRCh38
GRCh37197,660,749 - 7,683,190 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,566,788 - 7,589,196 (+)NCBIBuild 36Build 36hg18NCBI36
Celera197,533,272 - 7,554,380 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef197,306,514 - 7,352,872 (+)NCBIHuRef
CHM1_1197,660,679 - 7,682,947 (+)NCBICHM1_1
T2T-CHM13v2.0197,596,573 - 7,619,187 (+)NCBIT2T-CHM13v2.0
Camsap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,637,237 - 3,659,075 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl83,637,293 - 3,659,075 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3883,587,237 - 3,609,075 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,587,293 - 3,609,075 (+)Ensemblmm10GRCm38
MGSCv3783,587,450 - 3,609,075 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3683,587,676 - 3,609,047 (+)NCBIMGSCv36mm8
Celera83,817,778 - 3,839,404 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map81.92NCBI
Camsap3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,639,600 - 1,648,818 (-)Ensembl
ChiLan1.0NW_0049555631,639,369 - 1,648,826 (-)NCBIChiLan1.0ChiLan1.0
CAMSAP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,266,679 - 12,289,210 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11911,384,701 - 11,406,797 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0196,885,979 - 6,908,067 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1197,750,065 - 7,763,056 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl197,749,945 - 7,763,056 (+)EnsemblpanPan2panpan1.1
CAMSAP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,378,532 - 52,391,452 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,381,567 - 52,391,203 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2052,180,476 - 52,195,531 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02052,905,774 - 52,920,755 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2052,904,621 - 52,920,506 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,109,506 - 52,124,555 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02052,553,047 - 52,568,099 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02052,784,101 - 52,799,040 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Camsap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118213,164,947 - 213,179,472 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365884,655,311 - 4,669,532 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365884,660,664 - 4,669,836 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMSAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl271,531,614 - 71,547,419 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1271,531,607 - 71,547,413 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,891,789 - 71,901,026 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAMSAP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,085,113 - 7,104,133 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl67,085,282 - 7,103,885 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666081757,339 - 778,118 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Camsap3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624828688,564 - 704,174 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624828689,010 - 703,496 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Camsap3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1161,503,497 - 1,528,024 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Camsap3
181 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:127
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000001305
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12115486827Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1357337Gluco3Glucose level QTL 30.0004adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)12116966671Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
61334Gluco17Glucose level QTL 176.3adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)12116966671Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12111869600Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat

Markers in Region
RH131967  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2121,666,323 - 1,666,534 (+)MAPPERmRatBN7.2
Rnor_6.0122,157,042 - 2,157,252NCBIRnor6.0
Rnor_5.0124,319,374 - 4,319,584UniSTSRnor5.0
RGSC_v3.4122,546,829 - 2,547,039UniSTSRGSC3.4
Celera123,522,065 - 3,522,275UniSTS
Cytogenetic Map12p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 61 152 91 90 59 57 59 6 314 150 11 129 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001144840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000001305   ⟹   ENSRNOP00000001305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl126,441,152 - 6,464,582 (+)Ensembl
mRatBN7.2 Ensembl121,643,251 - 1,666,685 (+)Ensembl
Rnor_6.0 Ensembl122,134,022 - 2,157,403 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084906   ⟹   ENSRNOP00000073369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl126,447,207 - 6,464,582 (+)Ensembl
mRatBN7.2 Ensembl121,649,507 - 1,666,685 (+)Ensembl
Rnor_6.0 Ensembl122,140,203 - 2,157,381 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096347   ⟹   ENSRNOP00000084006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl126,441,152 - 6,464,582 (+)Ensembl
mRatBN7.2 Ensembl121,643,251 - 1,666,685 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101379   ⟹   ENSRNOP00000092580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl126,441,152 - 6,464,582 (+)Ensembl
mRatBN7.2 Ensembl121,643,251 - 1,666,685 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108516   ⟹   ENSRNOP00000087038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl126,441,152 - 6,464,582 (+)Ensembl
mRatBN7.2 Ensembl121,643,251 - 1,666,685 (+)Ensembl
RefSeq Acc Id: NM_001144840   ⟹   NP_001138312
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,441,152 - 6,464,582 (+)NCBI
mRatBN7.2121,643,251 - 1,666,685 (+)NCBI
Dahl_SR_JrHsd127,239,962 - 7,264,171 (+)NCBI
Lyon_Normotensive127,641,518 - 7,666,167 (+)NCBI
Lyon_Hypertensive127,029,656 - 7,053,867 (-)NCBI
F344_StmMcwi1217,108,853 - 17,133,062 (+)NCBI
Rnor_6.0122,134,022 - 2,157,403 (+)NCBI
Rnor_5.0124,296,348 - 4,319,735 (+)NCBI
RGSC_v3.4122,546,678 - 2,572,951 (-)RGD
Celera123,498,429 - 3,522,426 (+)RGD
Sequence:
RefSeq Acc Id: XM_006248776   ⟹   XP_006248838
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,440,962 - 6,464,534 (+)NCBI
mRatBN7.2121,643,064 - 1,666,637 (+)NCBI
Rnor_6.0122,133,936 - 2,157,355 (+)NCBI
Rnor_5.0124,296,348 - 4,319,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006248777   ⟹   XP_006248839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,440,964 - 6,464,534 (+)NCBI
mRatBN7.2121,643,066 - 1,666,637 (+)NCBI
Rnor_6.0122,133,937 - 2,157,355 (+)NCBI
Rnor_5.0124,296,348 - 4,319,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006248779   ⟹   XP_006248841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,440,963 - 6,464,534 (+)NCBI
mRatBN7.2121,643,066 - 1,666,637 (+)NCBI
Rnor_6.0122,133,936 - 2,157,355 (+)NCBI
Rnor_5.0124,296,348 - 4,319,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006248781   ⟹   XP_006248843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,440,964 - 6,464,534 (+)NCBI
mRatBN7.2121,643,066 - 1,666,637 (+)NCBI
Rnor_6.0122,133,936 - 2,157,355 (+)NCBI
Rnor_5.0124,296,348 - 4,319,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006248782   ⟹   XP_006248844
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,440,965 - 6,464,534 (+)NCBI
mRatBN7.2121,643,068 - 1,666,637 (+)NCBI
Rnor_6.0122,133,937 - 2,157,355 (+)NCBI
Rnor_5.0124,296,348 - 4,319,735 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769001   ⟹   XP_008767223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,440,965 - 6,464,534 (+)NCBI
mRatBN7.2121,643,068 - 1,666,637 (+)NCBI
Rnor_6.0122,133,937 - 2,157,355 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598455   ⟹   XP_017453944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,440,959 - 6,464,534 (+)NCBI
mRatBN7.2121,643,062 - 1,666,637 (+)NCBI
Rnor_6.0122,133,935 - 2,157,355 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598456   ⟹   XP_017453945
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,441,717 - 6,464,534 (+)NCBI
mRatBN7.2121,648,072 - 1,666,637 (+)NCBI
Rnor_6.0122,139,081 - 2,157,355 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089766   ⟹   XP_038945694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,440,962 - 6,464,534 (+)NCBI
mRatBN7.2121,643,064 - 1,666,637 (+)NCBI
RefSeq Acc Id: XM_063271665   ⟹   XP_063127735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,440,962 - 6,464,534 (+)NCBI
RefSeq Acc Id: XM_063271666   ⟹   XP_063127736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,440,963 - 6,464,534 (+)NCBI
RefSeq Acc Id: XM_063271667   ⟹   XP_063127737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,443,119 - 6,464,534 (+)NCBI
RefSeq Acc Id: XM_063271668   ⟹   XP_063127738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,443,126 - 6,464,534 (+)NCBI
RefSeq Acc Id: NP_001138312   ⟸   NM_001144840
- UniProtKB: D3ZXQ2 (UniProtKB/TrEMBL),   A6KQ12 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248838   ⟸   XM_006248776
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006248839   ⟸   XM_006248777
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AHT4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248841   ⟸   XM_006248779
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006248843   ⟸   XM_006248781
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AFS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248844   ⟸   XM_006248782
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_008767223   ⟸   XM_008769001
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017453944   ⟸   XM_017598455
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017453945   ⟸   XM_017598456
- Peptide Label: isoform X9
- Sequence:
Ensembl Acc Id: ENSRNOP00000073369   ⟸   ENSRNOT00000084906
Ensembl Acc Id: ENSRNOP00000001305   ⟸   ENSRNOT00000001305
RefSeq Acc Id: XP_038945694   ⟸   XM_039089766
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000087038   ⟸   ENSRNOT00000108516
Ensembl Acc Id: ENSRNOP00000084006   ⟸   ENSRNOT00000096347
Ensembl Acc Id: ENSRNOP00000092580   ⟸   ENSRNOT00000101379
RefSeq Acc Id: XP_063127735   ⟸   XM_063271665
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063127736   ⟸   XM_063271666
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063127737   ⟸   XM_063271667
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063127738   ⟸   XM_063271668
- Peptide Label: isoform X13
- UniProtKB: A0A0G2K5C0 (UniProtKB/TrEMBL)
Protein Domains
Calponin-homology (CH)   CKK

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZXQ2-F1-model_v2 AlphaFold D3ZXQ2 1-1269 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698369
Promoter ID:EPDNEW_R8894
Type:initiation region
Name:Camsap3_1
Description:calmodulin regulated spectrin-associated protein family, member3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0122,134,005 - 2,134,065EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597412 AgrOrtholog
BioCyc Gene G2FUF-20394 BioCyc
Ensembl Genes ENSRNOG00000000986 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001305 ENTREZGENE
  ENSRNOT00000001305.9 UniProtKB/TrEMBL
  ENSRNOT00000084906 ENTREZGENE
  ENSRNOT00000084906.3 UniProtKB/TrEMBL
  ENSRNOT00000096347 ENTREZGENE
  ENSRNOT00000096347.2 UniProtKB/TrEMBL
  ENSRNOT00000101379 ENTREZGENE
  ENSRNOT00000101379.2 UniProtKB/TrEMBL
  ENSRNOT00000108516 ENTREZGENE
  ENSRNOT00000108516.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.360 UniProtKB/TrEMBL
InterPro Calponin-like_dom_sf UniProtKB/TrEMBL
  CAMSAP UniProtKB/TrEMBL
  CAMSAP_CC1 UniProtKB/TrEMBL
  CAMSAP_CH UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CKK_dom_sf UniProtKB/TrEMBL
  CKK_domain UniProtKB/TrEMBL
  PRC_barrell-like UniProtKB/TrEMBL
KEGG Report rno:689074 UniProtKB/TrEMBL
NCBI Gene 689074 ENTREZGENE
PANTHER CALMODULIN-REGULATED SPECTRIN-ASSOCIATED PROTEIN 3 UniProtKB/TrEMBL
  PTHR21595 UniProtKB/TrEMBL
Pfam CAMSAP_CC1 UniProtKB/TrEMBL
  CAMSAP_CH UniProtKB/TrEMBL
  CAMSAP_CKK UniProtKB/TrEMBL
  CH_CAMSAP2_N UniProtKB/TrEMBL
PhenoGen Camsap3 PhenoGen
PROSITE CKK UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000986 RatGTEx
SMART CAMSAP_CKK UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology UniProtKB/TrEMBL
  PRCH_cytoplasmic UniProtKB/TrEMBL
UniProt A0A0G2K5C0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFS8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHT4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G9R5 ENTREZGENE, UniProtKB/TrEMBL
  A6KQ12 ENTREZGENE, UniProtKB/TrEMBL
  D3ZXQ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-02 Camsap3  calmodulin regulated spectrin-associated protein family, member 3  LOC689074  similar to Protein KIAA1543  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-06-15 LOC689074  similar to Protein KIAA1543  LOC682941  similar to Protein KIAA1543  Data merged from RGD:1592803 1643240 APPROVED
2009-06-15 LOC689074  similar to Protein KIAA1543  RGD1307246  similar to CG33130-PA   Data merged from RGD:1307246 1643240 APPROVED
2008-04-30 RGD1307246  similar to CG33130-PA   RGD1307246_predicted  similar to CG33130-PA (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC689074  similar to Protein KIAA1543      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC682941  similar to Protein KIAA1543      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1307246_predicted  similar to CG33130-PA (predicted)  LOC288373_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC288373_predicted  similar to CG33130-PA (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL