Pisd (phosphatidylserine decarboxylase) - Rat Genome Database

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Gene: Pisd (phosphatidylserine decarboxylase) Rattus norvegicus
Analyze
Symbol: Pisd
Name: phosphatidylserine decarboxylase
RGD ID: 1596729
Description: Predicted to enable phosphatidylserine decarboxylase activity. Predicted to be involved in several processes, including lipid droplet formation; mitochondrial protein catabolic process; and phosphatidylethanolamine biosynthetic process. Predicted to be located in several cellular components, including Golgi apparatus; cytosol; and lipid droplet. Predicted to be active in mitochondrion. Orthologous to human PISD (phosphatidylserine decarboxylase); PARTICIPATES IN forkhead class A signaling pathway; glycerophospholipid metabolic pathway; INTERACTS WITH acrylamide; bisphenol A; dibutyl phthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC681361; phosphatidylserine decarboxylase proenzyme; phosphatidylserine decarboxylase proenzyme, mitochondrial; similar to Phosphatidylserine decarboxylase proenzyme
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81482,166,401 - 82,215,479 (+)NCBIGRCr8
mRatBN7.21477,941,927 - 77,991,021 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1477,941,948 - 77,991,003 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1482,383,790 - 82,432,828 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01483,623,901 - 83,672,940 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,069,636 - 80,118,672 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01483,298,630 - 83,347,697 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1483,298,674 - 83,346,738 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01483,985,694 - 84,034,704 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41483,694,028 - 83,743,051 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1476,857,502 - 76,906,360 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
Golgi apparatus  (IEA,ISO)
lipid droplet  (IEA,ISO,ISS)
mitochondrial inner membrane  (IEA,TAS)
mitochondrion  (IBA,ISO,ISS)
nucleus  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18614015  


Genomics

Comparative Map Data
Pisd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81482,166,401 - 82,215,479 (+)NCBIGRCr8
mRatBN7.21477,941,927 - 77,991,021 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1477,941,948 - 77,991,003 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1482,383,790 - 82,432,828 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01483,623,901 - 83,672,940 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,069,636 - 80,118,672 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01483,298,630 - 83,347,697 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1483,298,674 - 83,346,738 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01483,985,694 - 84,034,704 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41483,694,028 - 83,743,051 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1476,857,502 - 76,906,360 (+)NCBICelera
Cytogenetic Map14q21NCBI
PISD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,618,491 - 31,662,564 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,618,491 - 31,662,221 (-)EnsemblGRCh38hg38GRCh38
GRCh372232,014,477 - 32,058,550 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362230,344,477 - 30,356,810 (-)NCBINCBI36Build 36hg18NCBI36
Build 342230,339,034 - 30,351,364NCBI
Celera2215,814,919 - 15,827,252 (-)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2214,973,668 - 14,986,003 (-)NCBIHuRef
CHM1_12231,974,095 - 31,986,424 (-)NCBICHM1_1
T2T-CHM13v2.02232,082,496 - 32,126,559 (-)NCBIT2T-CHM13v2.0
Pisd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39532,893,645 - 32,943,008 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl532,893,645 - 32,942,990 (-)EnsemblGRCm39 Ensembl
GRCm38532,736,301 - 32,785,642 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl532,736,301 - 32,785,646 (-)EnsemblGRCm38mm10GRCm38
MGSCv37533,078,962 - 33,128,275 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36533,053,170 - 33,102,483 (-)NCBIMGSCv36mm8
Celera530,198,745 - 30,248,776 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.33NCBI
Pisd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554555,744,816 - 5,789,534 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554555,744,816 - 5,789,408 (-)NCBIChiLan1.0ChiLan1.0
PISD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22341,568,344 - 41,612,743 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12244,268,836 - 44,313,230 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02212,638,418 - 12,682,733 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12230,495,546 - 30,539,521 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2230,495,546 - 30,539,389 (-)Ensemblpanpan1.1panPan2
PISD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12624,502,354 - 24,545,968 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2624,503,291 - 24,545,916 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2624,370,927 - 24,414,594 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02624,886,898 - 24,930,910 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2624,886,898 - 24,930,868 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12624,588,248 - 24,632,221 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02624,850,091 - 24,894,046 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02624,912,293 - 24,955,856 (-)NCBIUU_Cfam_GSD_1.0
Pisd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118117,388,363 - 117,510,060 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936755712,278 - 767,728 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936755665,416 - 767,597 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PISD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1448,303,458 - 48,312,393 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11448,303,459 - 48,341,820 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21451,417,522 - 51,446,644 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PISD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11914,500,156 - 14,544,893 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1914,501,215 - 14,545,037 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045111,563,939 - 111,609,697 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pisd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247478,032,855 - 8,074,677 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247478,036,416 - 8,074,609 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pisd
143 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:109
Interacting mature miRNAs:130
Transcripts:ENSRNOT00000024813
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat

Markers in Region
RH133338  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21477,990,699 - 77,990,901 (+)MAPPERmRatBN7.2
Rnor_6.01483,347,376 - 83,347,577NCBIRnor6.0
Rnor_5.01484,034,383 - 84,034,584UniSTSRnor5.0
RGSC_v3.41483,742,730 - 83,742,931UniSTSRGSC3.4
Celera1476,906,039 - 76,906,240UniSTS
RH 3.4 Map14531.8UniSTS
Cytogenetic Map14q21UniSTS
BE095985  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21477,981,879 - 77,982,042 (+)MAPPERmRatBN7.2
Rnor_6.01483,338,557 - 83,338,719NCBIRnor6.0
Rnor_5.01484,025,564 - 84,025,726UniSTSRnor5.0
RGSC_v3.41483,733,911 - 83,734,073UniSTSRGSC3.4
Celera1476,897,219 - 76,897,381UniSTS
RH 3.4 Map14531.1UniSTS
Cytogenetic Map14q21UniSTS
Ptdss2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21477,988,189 - 77,988,530 (+)MAPPERmRatBN7.2
Rnor_6.01483,344,866 - 83,345,206NCBIRnor6.0
Rnor_5.01484,031,873 - 84,032,213UniSTSRnor5.0
RGSC_v3.41483,740,220 - 83,740,560UniSTSRGSC3.4
Celera1476,903,529 - 76,903,869UniSTS
Cytogenetic Map14q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 47 31 19 31 1 1 74 35 40 11 1
Low 8 10 10 10 7 10 1 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001377107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001061408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002725000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000024813   ⟹   ENSRNOP00000024812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1477,941,967 - 77,990,990 (+)Ensembl
Rnor_6.0 Ensembl1483,298,674 - 83,346,738 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086090   ⟹   ENSRNOP00000068695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1477,941,960 - 77,990,743 (+)Ensembl
Rnor_6.0 Ensembl1483,341,851 - 83,344,917 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089198   ⟹   ENSRNOP00000071429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1477,941,960 - 77,989,887 (+)Ensembl
Rnor_6.0 Ensembl1483,343,330 - 83,345,514 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097659   ⟹   ENSRNOP00000079457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1477,981,155 - 77,990,990 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114187   ⟹   ENSRNOP00000095790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1477,941,948 - 77,991,003 (+)Ensembl
RefSeq Acc Id: NM_001377107   ⟹   NP_001364036
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,166,443 - 82,215,479 (+)NCBI
mRatBN7.21477,941,979 - 77,991,021 (+)NCBI
RefSeq Acc Id: NM_001399650   ⟹   NP_001386579
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,205,682 - 82,215,479 (+)NCBI
mRatBN7.21477,981,222 - 77,991,021 (+)NCBI
RefSeq Acc Id: NM_001399651   ⟹   NP_001386580
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,205,682 - 82,215,479 (+)NCBI
mRatBN7.21477,981,222 - 77,991,021 (+)NCBI
RefSeq Acc Id: XM_017599508   ⟹   XP_017454997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,166,401 - 82,215,479 (+)NCBI
mRatBN7.21477,941,927 - 77,991,013 (+)NCBI
Rnor_6.01483,298,630 - 83,347,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039092441   ⟹   XP_038948369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,189,011 - 82,215,479 (+)NCBI
mRatBN7.21477,964,543 - 77,991,013 (+)NCBI
RefSeq Acc Id: XM_063273620   ⟹   XP_063129690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,205,856 - 82,215,479 (+)NCBI
RefSeq Acc Id: XM_063273621   ⟹   XP_063129691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,201,793 - 82,215,479 (+)NCBI
RefSeq Acc Id: XM_063273622   ⟹   XP_063129692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81482,201,794 - 82,215,479 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_017454997   ⟸   XM_017599508
- Peptide Label: isoform X3
- UniProtKB: A0A8L2QDB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071429   ⟸   ENSRNOT00000089198
RefSeq Acc Id: ENSRNOP00000024812   ⟸   ENSRNOT00000024813
RefSeq Acc Id: ENSRNOP00000068695   ⟸   ENSRNOT00000086090
RefSeq Acc Id: NP_001364036   ⟸   NM_001377107
- Peptide Label: isoform 1
- UniProtKB: D3ZAW2 (UniProtKB/Swiss-Prot),   A0A8I6GLT0 (UniProtKB/TrEMBL),   A6IK76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948369   ⟸   XM_039092441
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000079457   ⟸   ENSRNOT00000097659
RefSeq Acc Id: ENSRNOP00000095790   ⟸   ENSRNOT00000114187
RefSeq Acc Id: NP_001386579   ⟸   NM_001399650
- Peptide Label: isoform 2
- UniProtKB: A0A0G2JTF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386580   ⟸   NM_001399651
- Peptide Label: isoform 3
RefSeq Acc Id: XP_063129691   ⟸   XM_063273621
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129692   ⟸   XM_063273622
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZNJ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129690   ⟸   XM_063273620
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTF7 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZAW2-F1-model_v2 AlphaFold D3ZAW2 1-406 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699436
Promoter ID:EPDNEW_R9944
Type:multiple initiation site
Name:Pisd_1
Description:phosphatidylserine decarboxylase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01483,298,661 - 83,298,721EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596729 AgrOrtholog
BioCyc Gene G2FUF-15240 BioCyc
Ensembl Genes ENSRNOG00000018319 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024813.8 UniProtKB/TrEMBL
  ENSRNOT00000086090.2 UniProtKB/TrEMBL
  ENSRNOT00000089198.2 UniProtKB/TrEMBL
  ENSRNOT00000097659.1 UniProtKB/TrEMBL
  ENSRNOT00000114187 ENTREZGENE
  ENSRNOT00000114187.1 UniProtKB/TrEMBL
InterPro PS_Dcarbxylase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PSD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PSD_type1_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 681361 ENTREZGENE
PANTHER PHOSPHATIDYLSERINE DECARBOXYLASE PROENZYME, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10067 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PS_Dcarbxylase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pisd PhenoGen
RatGTEx ENSRNOG00000018319 RatGTEx
UniProt A0A0G2JTF7 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K0F9_RAT UniProtKB/TrEMBL
  A0A8I5ZNJ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GLT0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QDB1 ENTREZGENE, UniProtKB/TrEMBL
  A6IK75_RAT UniProtKB/TrEMBL
  A6IK76 ENTREZGENE, UniProtKB/TrEMBL
  A6IK82_RAT UniProtKB/TrEMBL
  D3ZAW2 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Pisd  phosphatidylserine decarboxylase  LOC681361  similar to Phosphatidylserine decarboxylase proenzyme  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC681361  similar to Phosphatidylserine decarboxylase proenzyme  LOC683500  similar to Phosphatidylserine decarboxylase proenzyme  Data merged from RGD:1585693 1643240 APPROVED
2006-11-20 LOC681361  similar to Phosphatidylserine decarboxylase proenzyme      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683500  similar to Phosphatidylserine decarboxylase proenzyme      Symbol and Name status set to provisional 70820 PROVISIONAL