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Gene: Rp1 (RP1, axonemal microtubule associated) Rattus norvegicus

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Symbol:

Rp1

Name:

RP1, axonemal microtubule associated

RGD ID:

1596713

Description:

Predicted to enable microtubule binding activity. Predicted to be involved in axoneme assembly; photoreceptor cell development; and photoreceptor cell maintenance. Predicted to act upstream of or within cellular response to light stimulus; positive regulation of non-motile cilium assembly; and retina morphogenesis in camera-type eye. Predicted to be located in ciliary tip; photoreceptor inner segment; and photoreceptor outer segment. Predicted to be part of microtubule associated complex. Predicted to be active in axoneme and photoreceptor connecting cilium. Human ortholog(s) of this gene implicated in retinitis pigmentosa 1. Orthologous to human RP1 (RP1 axonemal microtubule associated); PARTICIPATES IN retinitis pigmentosa pathway; INTERACTS WITH aflatoxin B1; bisphenol A; endosulfan.

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

lipoxygenase homology domain-containing protein 1; LOC102552996; LOC362480; LOC681377; oxygen-regulated protein 1; rCG30348-like; retinitis pigmentosa 1; retinitis pigmentosa 1 (autosomal dominant); retinitis pigmentosa 1 (human); retinitis pigmentosa 1 homolog; retinitis pigmentosa 1 homolog (human); RGD1560182; Rp1h; similar to lipoxygenase homology domains 1; similar to Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog); uncharacterized LOC102552996

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	19,918,728 - 20,380,811 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	19,918,799 - 20,377,580 (+)	Ensembl				GRCr8
mRatBN7.2	5	15,121,104 - 15,582,363 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	15,121,133 - 15,579,363 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	17,359,324 - 17,375,651 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	18,956,553 - 18,972,879 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	18,693,943 - 18,710,270 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	15,005,028 - 15,060,508 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	15,043,955 - 15,060,508 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	19,789,094 - 19,844,587 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	15,393,101 - 15,401,890 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	14,541,674 - 14,558,002 (+)	NCBI		Celera
Cytogenetic Map	5	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast ductal carcinoma (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

HYPERTRIGLYCERIDEMIA 1 (ISO)

invasive ductal carcinoma (ISO)

Leber hereditary optic neuropathy (ISO)

optic atrophy (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 1 (ISO,ISS)

Vision Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-trichloroethane (ISO)

1,2-dichloroethane (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,4,6-tribromophenol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

6-propyl-2-thiouracil (ISO)

aflatoxin B1 (EXP,ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

copper(II) sulfate (ISO)

decabromodiphenyl ether (ISO)

diiodine (ISO)

endosulfan (EXP)

fulvestrant (ISO)

paracetamol (ISO)

phenformin (EXP)

sodium arsenite (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axoneme assembly (IBA,IEA,ISO)

cell projection organization (IEA)

cellular response to light stimulus (ISO)

intracellular signal transduction (IEA)

photoreceptor cell development (IEA,ISO)

photoreceptor cell maintenance (IBA,IEA,ISO)

photoreceptor cell outer segment organization (IBA,IEA,ISO)

positive regulation of non-motile cilium assembly (ISO)

response to light stimulus (IEA)

retina development in camera-type eye (IBA,ISO)

retina morphogenesis in camera-type eye (ISO)

retinal cone cell development (IEA,ISO)

retinal rod cell development (IEA,ISO)

visual perception (IEA)

Cellular Component

axoneme (IBA,IEA,ISO)

ciliary tip (IEA,ISO)

cilium (IEA,ISO)

microtubule associated complex (IEA,ISO)

photoreceptor cell cilium (IEA,ISO)

photoreceptor connecting cilium (IBA,IEA,ISO)

photoreceptor inner segment (IEA,ISO)

photoreceptor outer segment (IEA,ISO)

Molecular Function

microtubule binding (IEA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

retinitis pigmentosa pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Genes and mutations causing retinitis pigmentosa.	Daiger SP, etal., Clin Genet. 2013 Aug;84(2):132-41. doi: 10.1111/cge.12203. Epub 2013 Jun 19.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:11767049	PMID:11773008	PMID:12651948	PMID:14507858	PMID:15269252	PMID:16126734	PMID:16869982	PMID:20236041	PMID:20368623	PMID:20592197	PMID:21052544
PMID:21148103	PMID:24833722	PMID:29899041

Genomics

Comparative Map Data

Rp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	19,918,728 - 20,380,811 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	19,918,799 - 20,377,580 (+)	Ensembl				GRCr8
mRatBN7.2	5	15,121,104 - 15,582,363 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	15,121,133 - 15,579,363 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	17,359,324 - 17,375,651 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	18,956,553 - 18,972,879 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	18,693,943 - 18,710,270 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	15,005,028 - 15,060,508 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	15,043,955 - 15,060,508 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	19,789,094 - 19,844,587 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	15,393,101 - 15,401,890 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	14,541,674 - 14,558,002 (+)	NCBI		Celera
Cytogenetic Map	5	q12	NCBI

RP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	54,559,185 - 54,871,234 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	54,509,422 - 54,871,720 (+)	Ensembl			hg38	GRCh38
GRCh37	8	55,471,745 - 55,783,794 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	55,691,180 - 55,705,947 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	55,691,179 - 55,705,947	NCBI
Celera	8	51,519,220 - 51,533,987 (+)	NCBI		Celera
Cytogenetic Map	8	q11.23-q12.1	NCBI
HuRef	8	50,996,864 - 51,011,630 (+)	NCBI		HuRef
CHM1_1	8	55,580,233 - 55,594,998 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	54,886,748 - 55,248,781 (+)	NCBI		T2T-CHM13v2.0

Rp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	4,185,896 - 4,479,508 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	4,069,780 - 4,479,464 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	4,115,673 - 4,409,266 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	3,999,557 - 4,409,241 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	4,334,224 - 4,350,473 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	4,334,224 - 4,350,473 (-)	NCBI		MGSCv36	mm8
Celera	1	4,363,200 - 4,379,450 (-)	NCBI		Celera
Cytogenetic Map	1	A1	NCBI
cM Map	1	1.65	NCBI

Rp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955454	13,781,556 - 14,082,310 (+)	NCBI	ChiLan1.0	ChiLan1.0

RP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	70,191,285 - 70,524,500 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	45,916,098 - 46,248,935 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	50,979,412 - 51,311,431 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	48,454,096 - 48,617,283 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	48,419,033 - 48,583,879 (+)	Ensembl			panPan2	panpan1.1
PanPan1.1 Ensembl	8	48,419,033 - 48,583,879 (+)	NCBI			panPan2	panpan1.1

RP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	6,079,519 - 6,136,009 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	6,079,377 - 6,136,009 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	6,435,871 - 6,446,199 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	6,193,857 - 6,204,194 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	6,147,680 - 6,204,194 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	6,139,004 - 6,149,329 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	6,345,098 - 6,355,440 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	6,523,726 - 6,534,052 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	73,123,919 - 73,388,680 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936496	1,524,123 - 1,583,114 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	76,724,604 - 76,734,610 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	76,724,604 - 76,730,264 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	50,743,699 - 50,837,089 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	50,627,957 - 50,685,911 (+)	NCBI		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
ChlSab1.1 Ensembl	8	50,627,957 - 50,685,911 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	90,878,192 - 91,240,016 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	1,093,929 - 1,179,265 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624735	1,129,333 - 1,179,387 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Rp1
2868 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	251
Count of miRNA genes:	165
Interacting mature miRNAs:	183
Transcripts:	ENSRNOT00000047093
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293666	Bmd38	Bone mineral density QTL 38	4.4		femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	5	13731153	43590997	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	8627230	52665523	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	14606078	59606078	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	17576633	62576633	Rat
1578774	Tcas8	Tongue tumor susceptibility QTL 8	3.47		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	15707451	60707451	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
2312562	Pur18	Proteinuria QTL 18	2.6	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	5	6922282	37468560	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	17486080	62486080	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
631827	Alc4	Alcohol consumption QTL 4	3.5		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	5	12970480	25683802	Rat
2303577	Gluco47	Glucose level QTL 47	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	16520019	61520019	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	17486080	62486080	Rat
2313085	Bss59	Bone structure and strength QTL 59	2.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	5	8627230	53627230	Rat

Markers in Region

RH134701

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	15,175,838 - 15,176,049 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	15,060,176 - 15,060,386	NCBI	Rnor6.0
Rnor_5.0	5	19,844,255 - 19,844,465	UniSTS	Rnor5.0
RGSC_v3.4	5	15,401,968 - 15,402,178	UniSTS	RGSC3.4
Celera	5	14,557,670 - 14,557,880	UniSTS
Cytogenetic Map	5	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
6	7	48	68	38	50	33	4	33	142	63	9	66	33	72	17	13	13

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001195676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AI577591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI713024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000047093 ⟹ ENSRNOP00000040735

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	19,957,570 - 19,973,788 (+)	Ensembl
mRatBN7.2 Ensembl	5	15,159,859 - 15,176,171 (+)	Ensembl
Rnor_6.0 Ensembl	5	15,043,955 - 15,060,508 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108094 ⟹ ENSRNOP00000094773

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	19,918,799 - 20,377,580 (+)	Ensembl
mRatBN7.2 Ensembl	5	15,121,133 - 15,579,363 (+)	Ensembl

RefSeq Acc Id:

NM_001195676 ⟹ NP_001182605

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,957,570 - 19,973,788 (+)	NCBI
mRatBN7.2	5	15,159,948 - 15,176,164 (+)	NCBI
Rnor_6.0	5	15,043,955 - 15,060,508 (+)	NCBI
Rnor_5.0	5	19,789,094 - 19,844,587 (+)	NCBI
Celera	5	14,541,674 - 14,558,002 (+)	NCBI

Sequence:

show sequence

GTGAGCTCCTTCTGGAGATTAGCATCACCTTGGATTAAATGAATTGGCTGTCCTTAATCCCTGA
GCACACATGCTAATAATAAATCCAAAGACATTTGTTTACATGAAACAAGCAGGTTACATATCCA
GTGATGTTTATACAAACCACAAACTATTTACTCTTTTCTTCATAAGGAAAGGTTCAAGTTCTGG
TCTCATCTAAAATGAGTGAGACACCTTCTACTAGTTTCTCCATGATTCGTCTGACTTCTTCTGA
AGGTCAAGTTCCTTCTCGCCATTCAAATGTCACTCATCCCACAGTGGCTAAACGCATCAGTTTC
TATAAGAGCGGAGATCCCCAGTTTGGTGGTGTTAGGGTGGTGGTCAACCCTCGTTCCTTTAAGA
CTTTTGATGCCCTGCTAGACAATTTATCCAGGAAAGTGCCCTTGCCCTTTGGGGTGAGGAATAT
CAGCACGCCCCGTGGACGGCACAGCATCACCAAGCTAGAGGAGCTAGAGGACGGCGAGTCTTAT
GTATGCTCCCACAATAAGAAGGTGCTTCCGGTTGACCTGGACAAGGCCCGCAGGCGCCCTCGGC
CCTGGCTCAGTAGTCGCTCTATAAGCACACATGTGAAGCTCCGCTCTGCTACTGCCACTATGCC
CACCACCGCTCCTGGCTTGTTTCGTGCCCCAAGGAGGCTTGTGGTCTTTCGGAACGGTGACCCA
AAGACCAGGCGTGTGGTCCTTCTTAGCCGGAGGATCACTCAGAGCTTCGAAGCCTTTCTACAGT
ACCTGACACAGGTCATGCAGTATCCTGTGGCAAAGCTGTATGCCACAGACGGAAGAAAAGTTCC
TAGTCTCCAAGCAGTGATACTGAGCTCTGGAGCTGTGGTGGCAGCCGGAAGGGAGCCATTCAAA
CCAGGAAATTACGACATCCAAAAATACTTGCTTCCTGTCAAGTTACCAGGAATCTCTCATCGCG
TGCACCGGAAGGGAAAAGCCAAGATAGAAAAAAGAAAGATGAGCACACATTCAGTCCCAAGACC
CCAGACTGATTCCCTGGCCTCAGAGAAAACATATGATTGCTTTTCAGACTTTTCTGTAGCCCCT
GAGAATTACCTGGCCTTAGAGACACATGATTCTCAGACTCTATCAACATATCCTTCTGAAGATG
GTGTTGAGAAATCGATAGTTTTTAATCAAGATGGTACTATGACGGTCGTGATGAAAGTTCGATT
CAAGATAAAAGAAGAAACTGTTAAGTGGACAACCACTGTCAATAGAGCTGATCTTTCTAATGAT
GATGAAAAGAGTAAGATAAGTAGCTATCCTGGTAAAACAGAAGATCGATCGTCTAGTTTAAAGC
TTGTGGTGCCATGCTCATTGTCTGAAGACATCACAGACACCACTCAGCAGGGCAGTTTGACAGA
GGAAGAAAATACTCAAATGACAGAACAGCAGGCTCTGTCAAGTAGCTCTGCTGGCTGGGAGAAT
GCCTCCATGGAGGTAGGCATTCAGGGAAGCCAGAAACAAGTGAAACACTTTTATAGACCCCCAA
CCCCTGGACCAAGGAGAATGAGACAAAAGAAATCTGTGATAGGGACTGTCACCGTAGTATCTGA
AACAGAGGTTCAAGAAAAGCAGTTTTCTTATAGGGAAGAAAGAGAGGTTGGAGAAAAATCCAAG
TACCACATGTTTACACATTCTTGCAGCAAAATGTCCTCAGTATCTAATAAACTCGTTCAGATCA
GTAGCGATGATGAGAGGGAGTCAGCATTAGAAAGAACAAAGGAAAGTGGACCGCTCAAGTCACA
TGCCATAAATGCTGGTGCTATAGAAATTACAAGTCAGAGGGTCTTAAAGATGTGCCATAACAAT
GCTTTAGCGTCAACTGTACCAGAGAACTCAGTTGTGGAAGAAGGCACAGATGACAGTGCCATAT
CAGGCAAAGCCACTATCAAGCACTTCAGAACTTGTGGTAATGCCAATGACAGCTTCAGTTCTAC
TACAGCAGATACAACTCTTACCTCAGGTAACAACTGTCCAAATGTCAGGACTATTTCTGAGGTT
CCTTCTGTAGGATCTCCTGTGCTCACCACAGGACTTGTTAATGAATTTGCTCATTGTGGTTTAA
CAGAACATCCAGGAAATGGAAGGCAGATTTCATCCCCTTTTGCCAGCAAAAAAAAGAAGAAATC
TCAGCAGCGAATGATAACTTCCAAGGATAAGAAAAAAGTGATTGAAACCAAAGGAATCCCTAAC
AAAGTTGGGAAAATACACAGAGCAGGAACAATTGCACAGGTGGTACTATTGCAAGATTCGGGTG
GTCTGGATAAAGAAGGGAGAGTTCGTGAGGAGGAACTTGACACAAGTCCTATGGTAATTGAATC
ACATGATATTTTCCCCAAAGGTAATTCCAAATTTTCCAAGAATTTCCATAAAAACAAATTAAAT
ACTGTTCAAAATCCTAAGACTCAAAAACTTTTAGCTAAAAGAAAATCAAGACCACTAAAGATTA
AAAGCATAGGTGAACTCAGAAAACAAGAGACTGGTCAAGAAGATAAAGTATTTCTCCATAGCGA
ATCTAAACTTTGTGAAAGTAATTTGGAAAAACAAAGTTTACTTCATGTGTTTAGTAGTCTTGAG
GAAGACCAGAAAGCTTTGCATAGATCACAGTCACAAGTGGAGACAGTAACTGAAAATTGGAAAG
GAATGACAAAAAAGAGTTTAGTCCCAAAAGTTAATGATCTACACGTAACTGTAAGAAACCAGAG
AAAACAAAAGGGAGTTAAATTAAAGTCAGGTGCTACAGTAAGTGAACAGCATATTGCAACCAGG
GCGGATCCCTTAGCATCTTTGAAAAAACCTGATTTAACCGAGGGTATTCCCCATCACTCAGTTA
AGAGCTATATACAGCGATGGTTGCAGAACATAAATCCATATCCAGATTTTGAGCACAGAAAGTC
AGCTCCACTAGGCCAAGATAGAAGTAATGTGGTAAATTATAACAGTAATGGTTTTCCGGAAAAT
AATCTGCCTACAACTTCTTCAAAAGGAAAGAGTTTTTTAATGGAAAGTAATAAGCGCAAAACTA
AAAATGCCAATTGGAAAGGCAATAAAAATCAAGAGACAAGTAAATCTCTTGTTGTTAAAGATAA
TGGTGAACAGCCTAATAAACATTCCTGTGAGAGCCAAGATGAGTCTCTGTATGATTCTTACTTG
GGTCCTTTGCATGACAATTGTACTTTGTCACAGACCAGTATAAACGATCCTTGTACTAAAAGTC
ATTTATCTACTGAAAAGTCAAGACCAGAAGTGAAGCTTGTTTACCAAGAAATGAACTTTTCCAC
AAAAAGGCAAACTCTTGAGGTTGCCATTCAGGTAGACACTATGGGAGAGAATGTTCCAAAAGAC
TTACTAGCTCTGTTGCTCCAGCACCTGGAAGCTTTTATTCCTAATAATCAGAAGCATCAAAATG
GAATTTCTCAACTACCAGGTTCATTAGCAGAGGTTGTCTTCCCTTCTGCAATATATAATTCATC
CACAAATCTCCTTCTGGCTTGGCTTTTGGTACTAAACCTAAAGAGAAATATGAATAGCTTCTGT
CAAAGCGATGCTCCTAAGACGACCAGCAGATCTTCAGAAACGGCTGCACTGTTGGATGTTCTGA
AGCACGTCGCCATCACAGAGGAAGCCGATGACTTGAAGGCCGCTGTTGCCAACTTAGTGGAATC
AACCAAAACTTGCAGTGGACCCAGCGGGAGAGAACAAGATACGGCACCAGCAAATTGTATAGCA
GCCAGCCTTCACAGTGTGGACAAGTGTAAGGAAAACAAGAGTACCCAGAAGAGCCTATTGGATG
AAGGCTACTCTGTCAGGGGGGACTGTGGCCCCGAGCTCTGTGTTTTAGAAATGGTTAGCAAGTC
AAACAACACTCCAAGTGAGGGGCATACTGTAAGCATGACTTATCCTCCAAAAGGGGTAAATAAC
CAAAATGATGCCCTTTTCACTAGTAATGATAGTTCTACTATGAGCCAGCGTTCCACACACAATG
CTTCTTTCCTAGGAGAGGCCTGTTTACTTACAGATAGTTTGTGTTCCCATAAGGCTTGTGCCCA
GAAGGACAACATCTATGAGGCAGCTTGCTTGAGTGATGAGACTCACATTCCCATCAGAGACTGC
AAAACAATTGAGTTCGTGAATTCAAAAGAAAACAAATGCACTGACAATCTGGAATTAACTGAAG
AAATCAAAACTGTTGACAAAGTTCCAAAAGACCTAAATATTTTGGCAGATTCTATAGATAAAAA
TGAATCTGATATATCAACTTCATCCCAAAATGTCAATAAGTTAAGTTCCCAAGGTATTTTCCTA
AGCAAAACTCATCTAGATTCTGACAAGGACTATAGTCCTCTAGAAGAATTTCAAAATTGCCCAC
CTAAGAAAATTGTGAATAAAAAGAAATCTGTTTCTTCTGATAAGGAAGATTCAAGGACTTCTGA
AGAACCAAGGTCAATAACCAATAGTGTGACATCAAGTGAAAGAAATGCCACTTCAGAATTAGAA
TCTTTTGAAGAATCAGAAAGTCAAGACACAGGTATCTTCAATATGAAGGTAAGGACTGAAGAAA
AAGCTGCCAAGGAGTCAATGCAAAAAGAATCAGAAGCTAGGATGAGTTTGGAATTGATAAACAT
ATCAGGGAGGAATATTATAGAACAGGGAAGAAGAAATACTGCATTTCTGGAGACAACAGGTAGG
GGGCAGGTGACACCACCATCTTTAGTTTTTTGCTATGATTCTAATAAAAACACTGAAAAAGAGA
TGAGTGTAGGAGAAACTAAGATGAGAGTTAAGAAGATAGTAGACAGCATGGAAAATGAAAGTTA
CACAGACTCTTCACTTAATTGTAACAAACAGCACAGAAGTCCAGGGACCTTAGATTGGTCAGAT
TATGGATCAGACAGTGAGAGCCGATATCCTTGTAAAGCATTGAGCTATGAGCACAGTGATGACA
CCGGCCAAGAGAGAGAGTACCCTAGAGGAATTGTGAGAAGGGCAATAGAAAAGCTTTATGGCAA
AGCAGAGATTATCAAACCACCATTTTTCCATGGGTCTATACACAAATCTCAAGTTTGTCCTTAT
AATCCTGTGGAAGTTCCGTGTGTTAAGAAAACACATTTTTATGAGTCTGAATGTCAGTCACTGG
TCTCTTCTGAACAGGTATCTAGAAGTTCACTCATGTTGCAGGAATTCCAGGAGGAAAGACAATC
TGAGGTTGATGCCAATGGCATGGGAGACAGTTTTGGGGACAGCAGCATAGAAAAGGTTACAAAA
CCAAGTGAGCATGGCAGGGTCTTTATGGAAAAAGAGAAGGGAAAACTGATTGACAATGGCAAAT
GGCTCCTGAGAGAAAATCATTTGTGGAGGGTGTCACTGGACAATCCTGGCATGTATGGCAATGC
AGACACCACATCAGTGGATACACTAATGGATAAGAATAGCATTGAGGTGCCATATTCACATTTC
GGAGAGTTGGCTCCTGGTCCAACAATGGCTGAATTGTCCTCTTCAGAAATAGAGGAAATGACTC
AACCCCTTGAAGTGAAATGCAATTATTTTAACTTTCCTCATGGTAGTGACTCTGAGCCTTTTGG
TGAAGATTTTCTAGATGCACAGAATACAAACTGCCCCAAAGAGAAAATACCCAACCATCACAAA
GAGGAGAAGCGTAATTCTCCATCTGAAAGAACATGTACGCCTGTTACTCAAACCTTTGCTTCTG
CTGGTAATAAAGTCCACCCTGTCTGCAGTGATGTTATTAAAACTCAGCCATTACCTGGAAGTAG
TATAACTCATGGCGCACTTCAGGAAGGCGACTCTTTGGATAAACTCTATGCTCTTTGTGGTCAA
CATTGTCCGATACTAACTGTTATTATTCAACCTGTAAATGAGGAAGACCGAGGATTTGCTTATC
GAAAAGATTCCGATATTGAAAATTCTTTGGGTTTTCAGTTATGGATGGAAATATATCCATTTCT
GCTACAGTCAAAGAAAAACATGTTCACAAGTGAGAGCAGGAAAGTGAATGTGGGCAAACAATTT
ACTGATAATGCCATTGGTAATCTGTGTGATCGACTTTATTTCAAAAACATGATTGACTTGGTGG
ATAAAAGAGCTAACTCTTTGAGGGAGGAAGTTAATTTGAACAAAGTTCAATTATATTTAAAGAA
AAGGTTTTCAGATCTTTTGCCTTCATCGTCACTAGTGGTGTGGGATATGAATTCTGTTTCACTA
ACCCCCAGCAACTGGACAGATAACTTCAAAAGTGTTGATGAGAACAACTTCATTAACAGATTCC
AGAACTCAAGAAAAAATCCCAACCAAGTAGTAAGAGAAGAAAACAGTTGTCAATTCCATTGGGA
GCTGTTTGGTCAAGTTTACTTGTTAGATATTTGCCAAGTTGAGAAATCCTTACATATCAAAACC
AGAAGTAAATTAGAAATATATTACATTTTAGGGGGTGAAGTTCTTTTCATTTGGGAAGAAGAAA
ATCAATTAAATATAATAGATATTGAAAGCCCTAATGATCAGAATGATTTATAACTTCAATATTA
GCACAATCATTAGCTGTCAATTATGTTTTTCCCATAAAAAGGTACAGTACATGGGATAGACTTT
AGGCTAGATTCTCTAAGAATTCCTTGCTTTTTCAAAATGAGAATACCTTGGAAAACATATTCTT
GGATAAAATAAATTTGTTTTTTTTTATTGCTTTGTTCCTCATTTTCTCAGTAATTAAAGTTTTA
TGTAGTTTTATTTTAAACATGCATTATTTTGTATAGCTATGATTTTGTCTGATCAGGATATAAG
AAATATGGCCAGGACAAGAAATATGTCCTTAAAATGTTGTCAAGTGCATATATGATATTGAATA
TATTAGTGAATAAATATAACTTTAAACTATTTCATTTAAGTGCTGATTGAATAAAAAGTATTAT
TAAAGCTCTCCAGTA

hide sequence

RefSeq Acc Id:

XM_008763558 ⟹ XP_008761780

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,918,728 - 19,973,788 (+)	NCBI
mRatBN7.2	5	15,121,104 - 15,176,164 (+)	NCBI
Rnor_6.0	5	15,005,028 - 15,060,508 (+)	NCBI

Sequence:

show sequence

CAAACACGACTTCTTCCCATCACAGACAGGACAGTCTTATAGCAAGCTCAGCCTTTGGTCCAGA
TTCTTCTCTTGATGCAACACAGGGATTTCTGCATATGCTTGAGACATTGAAGGCTGTCCTGAAG
ATCATAGTCCTTCCTACTGTTGGGATTCCTTGAATGGACTATAAATTACAGCTCTCTACCATGC
CTGGTATTTCCTCAAATATCTTCTTATCAAAAGTCTCATCTAAAATGAGTGAGACACCTTCTAC
TAGTTTCTCCATGATTCGTCTGACTTCTTCTGAAGGTCAAGTTCCTTCTCGCCATTCAAATGTC
ACTCATCCCACAGTGGCTAAACGCATCAGTTTCTATAAGAGCGGAGATCCCCAGTTTGGTGGTG
TTAGGGTGGTGGTCAACCCTCGTTCCTTTAAGACTTTTGATGCCCTGCTAGACAATTTATCCAG
GAAAGTGCCCTTGCCCTTTGGGGTGAGGAATATCAGCACGCCCCGTGGACGGCACAGCATCACC
AAGCTAGAGGAGCTAGAGGACGGCGAGTCTTATGTATGCTCCCACAATAAGAAGGTGCTTCCGG
TTGACCTGGACAAGGCCCGCAGGCGCCCTCGGCCCTGGCTCAGTAGTCGCTCTATAAGCACACA
TGTGAAGCTCCGCTCTGCTACTGCCACTATGCCCACCACCGCTCCTGGCTTGTTTCGTGCCCCA
AGGAGGCTTGTGGTCTTTCGGAACGGTGACCCAAAGACCAGGCGTGTGGTCCTTCTTAGCCGGA
GGATCACTCAGAGCTTCGAAGCCTTTCTACAGTACCTGACACAGGTCATGCAGTATCCTGTGGC
AAAGCTGTATGCCACAGACGGAAGAAAAGTTCCTAGTCTCCAAGCAGTGATACTGAGCTCTGGA
GCTGTGGTGGCAGCCGGAAGGGAGCCATTCAAACCAGGAAATTACGACATCCAAAAATACTTGC
TTCCTGTCAAGTTACCAGGAATCTCTCATCGCGTGCACCGGAAGGGAAAAGCCAAGATAGAAAA
AAGAAAGATGAGCACACATTCAGTCCCAAGACCCCAGACTGATTCCCTGGCCTCAGAGAAAACA
TATGATTGCTTTTCAGACTTTTCTGTAGCCCCTGAGAATTACCTGGCCTTAGAGACACATGATT
CTCAGACTCTATCAACATATCCTTCTGAAGATGGTGTTGAGAAATCGATAGTTTTTAATCAAGA
TGGTACTATGACGGTCGTGATGAAAGTTCGATTCAAGATAAAAGAAGAAACTGTTAAGTGGACA
ACCACTGTCAATAGAGCTGATCTTTCTAATGATGATGAAAAGAGTAAGATAAGTAGCTATCCTG
GTAAAACAGAAGATCGATCGTCTAGTTTAAAGCTTGTGGTGCCATGCTCATTGTCTGAAGACAT
CACAGACACCACTCAGCAGGGCAGTTTGACAGAGGAAGAAAATACTCAAATGACAGAACAGCAG
GCTCTGTCAAGTAGCTCTGCTGGCTGGGAGAATGCCTCCATGGAGGTAGGCATTCAGGGAAGCC
AGAAACAAGTGAAACACTTTTATAGACCCCCAACCCCTGGACCAAGGAGAATGAGACAAAAGAA
ATCTGTGATAGGGACTGTCACCGTAGTATCTGAAACAGAGGTTCAAGAAAAGCAGTTTTCTTAT
AGGGAAGAAAGAGAGGTTGGAGAAAAATCCAAGTACCACATGTTTACACATTCTTGCAGCAAAA
TGTCCTCAGTATCTAATAAACTCGTTCAGATCAGTAGCGATGATGAGAGGGAGTCAGCATTAGA
AAGAACAAAGGAAAGTGGACCGCTCAAGTCACATGCCATAAATGCTGGTGCTATAGAAATTACA
AGTCAGAGGGTCTTAAAGATGTGCCATAACAATGCTTTAGCGTCAACTGTACCAGAGAACTCAG
TTGTGGAAGAAGGCACAGATGACAGTGCCATATCAGGCAAAGCCACTATCAAGCACTTCAGAAC
TTGTGGTAATGCCAATGACAGCTTCAGTTCTACTACAGCAGATACAACTCTTACCTCAGGTAAC
AACTGTCCAAATGTCAGGACTATTTCTGAGGTTCCTTCTGTAGGATCTCCTGTGCTCACCACAG
GACTTGTTAATGAATTTGCTCATTGTGGTTTAACAGAACATCCAGGAAATGGAAGGCAGATTTC
ATCCCCTTTTGCCAGCAAAAAAAAGAAGAAATCTCAGCAGCGAATGATAACTTCCAAGGATAAG
AAAAAAGTGATTGAAACCAAAGGAATCCCTAACAAAGTTGGGAAAATACACAGAGCAGGAACAA
TTGCACAGGTGGTACTATTGCAAGATTCGGGTGGTCTGGATAAAGAAGGGAGAGTTCGTGAGGA
GGAACTTGACACAAGTCCTATGGTAATTGAATCACATGATATTTTCCCCAAAGGTAATTCCAAA
TTTTCCAAGAATTTCCATAAAAACAAATTAAATACTGTTCAAAATCCTAAGACTCAAAAACTTT
TAGCTAAAAGAAAATCAAGACCACTAAAGATTAAAAGCATAGGTGAACTCAGAAAACAAGAGAC
TGGTCAAGAAGATAAAGTATTTCTCCATAGCGAATCTAAACTTTGTGAAAGTAATTTGGAAAAA
CAAAGTTTACTTCATGTGTTTAGTAGTCTTGAGGAAGACCAGAAAGCTTTGCATAGATCACAGT
CACAAGTGGAGACAGTAACTGAAAATTGGAAAGGAATGACAAAAAAGAGTTTAGTCCCAAAAGT
TAATGATCTACACGTAACTGTAAGAAACCAGAGAAAACAAAAGGGAGTTAAATTAAAGTCAGGT
GCTACAGTAAGTGAACAGCATATTGCAACCAGGGCGGATCCCTTAGCATCTTTGAAAAAACCTG
ATTTAACCGAGGGTATTCCCCATCACTCAGTTAAGAGCTATATACAGCGATGGTTGCAGAACAT
AAATCCATATCCAGATTTTGAGCACAGAAAGTCAGCTCCACTAGGCCAAGATAGAAGTAATGTG
GTAAATTATAACAGTAATGGTTTTCCGGAAAATAATCTGCCTACAACTTCTTCAAAAGGAAAGA
GTTTTTTAATGGAAAGTAATAAGCGCAAAACTAAAAATGCCAATTGGAAAGGCAATAAAAATCA
AGAGACAAGTAAATCTCTTGTTGTTAAAGATAATGGTGAACAGCCTAATAAACATTCCTGTGAG
AGCCAAGATGAGTCTCTGTATGATTCTTACTTGGGTCCTTTGCATGACAATTGTACTTTGTCAC
AGACCAGTATAAACGATCCTTGTACTAAAAGTCATTTATCTACTGAAAAGTCAAGACCAGAAGT
GAAGCTTGTTTACCAAGAAATGAACTTTTCCACAAAAAGGCAAACTCTTGAGGTTGCCATTCAG
GTAGACACTATGGGAGAGAATGTTCCAAAAGACTTACTAGCTCTGTTGCTCCAGCACCTGGAAG
CTTTTATTCCTAATAATCAGAAGCATCAAAATGGAATTTCTCAACTACCAGGTTCATTAGCAGA
GGTTGTCTTCCCTTCTGCAATATATAATTCATCCACAAATCTCCTTCTGGCTTGGCTTTTGGTA
CTAAACCTAAAGAGAAATATGAATAGCTTCTGTCAAAGCGATGCTCCTAAGACGACCAGCAGAT
CTTCAGAAACGGCTGCACTGTTGGATGTTCTGAAGCACGTCGCCATCACAGAGGAAGCCGATGA
CTTGAAGGCCGCTGTTGCCAACTTAGTGGAATCAACCAAAACTTGCAGTGGACCCAGCGGGAGA
GAACAAGATACGGCACCAGCAAATTGTATAGCAGCCAGCCTTCACAGTGTGGACAAGTGTAAGG
AAAACAAGAGTACCCAGAAGAGCCTATTGGATGAAGGCTACTCTGTCAGGGGGGACTGTGGCCC
CGAGCTCTGTGTTTTAGAAATGGTTAGCAAGTCAAACAACACTCCAAGTGAGGGGCATACTGTA
AGCATGACTTATCCTCCAAAAGGGGTAAATAACCAAAATGATGCCCTTTTCACTAGTAATGATA
GTTCTACTATGAGCCAGCGTTCCACACACAATGCTTCTTTCCTAGGAGAGGCCTGTTTACTTAC
AGATAGTTTGTGTTCCCATAAGGCTTGTGCCCAGAAGGACAACATCTATGAGGCAGCTTGCTTG
AGTGATGAGACTCACATTCCCATCAGAGACTGCAAAACAATTGAGTTCGTGAATTCAAAAGAAA
ACAAATGCACTGACAATCTGGAATTAACTGAAGAAATCAAAACTGTTGACAAAGTTCCAAAAGA
CCTAAATATTTTGGCAGATTCTATAGATAAAAATGAATCTGATATATCAACTTCATCCCAAAAT
GTCAATAAGTTAAGTTCCCAAGGTATTTTCCTAAGCAAAACTCATCTAGATTCTGACAAGGACT
ATAGTCCTCTAGAAGAATTTCAAAATTGCCCACCTAAGAAAATTGTGAATAAAAAGAAATCTGT
TTCTTCTGATAAGGAAGATTCAAGGACTTCTGAAGAACCAAGGTCAATAACCAATAGTGTGACA
TCAAGTGAAAGAAATGCCACTTCAGAATTAGAATCTTTTGAAGAATCAGAAAGTCAAGACACAG
GTATCTTCAATATGAAGGTAAGGACTGAAGAAAAAGCTGCCAAGGAGTCAATGCAAAAAGAATC
AGAAGCTAGGATGAGTTTGGAATTGATAAACATATCAGGGAGGAATATTATAGAACAGGGAAGA
AGAAATACTGCATTTCTGGAGACAACAGGTAGGGGGCAGGTGACACCACCATCTTTAGTTTTTT
GCTATGATTCTAATAAAAACACTGAAAAAGAGATGAGTGTAGGAGAAACTAAGATGAGAGTTAA
GAAGATAGTAGACAGCATGGAAAATGAAAGTTACACAGACTCTTCACTTAATTGTAACAAACAG
CACAGAAGTCCAGGGACCTTAGATTGGTCAGATTATGGATCAGACAGTGAGAGCCGATATCCTT
GTAAAGCATTGAGCTATGAGCACAGTGATGACACCGGCCAAGAGAGAGAGTACCCTAGAGGAAT
TGTGAGAAGGGCAATAGAAAAGCTTTATGGCAAAGCAGAGATTATCAAACCACCATTTTTCCAT
GGGTCTATACACAAATCTCAAGTTTGTCCTTATAATCCTGTGGAAGTTCCGTGTGTTAAGAAAA
CACATTTTTATGAGTCTGAATGTCAGTCACTGGTCTCTTCTGAACAGGTATCTAGAAGTTCACT
CATGTTGCAGGAATTCCAGGAGGAAAGACAATCTGAGGTTGATGCCAATGGCATGGGAGACAGT
TTTGGGGACAGCAGCATAGAAAAGGTTACAAAACCAAGTGAGCATGGCAGGGTCTTTATGGAAA
AAGAGAAGGGAAAACTGATTGACAATGGCAAATGGCTCCTGAGAGAAAATCATTTGTGGAGGGT
GTCACTGGACAATCCTGGCATGTATGGCAATGCAGACACCACATCAGTGGATACACTAATGGAT
AAGAATAGCATTGAGGTGCCATATTCACATTTCGGAGAGTTGGCTCCTGGTCCAACAATGGCTG
AATTGTCCTCTTCAGAAATAGAGGAAATGACTCAACCCCTTGAAGTGAAATGCAATTATTTTAA
CTTTCCTCATGGTAGTGACTCTGAGCCTTTTGGTGAAGATTTTCTAGATGCACAGAATACAAAC
TGCCCCAAAGAGAAAATACCCAACCATCACAAAGAGGAGAAGCGTAATTCTCCATCTGAAAGAA
CATGTACGCCTGTTACTCAAACCTTTGCTTCTGCTGGTAATAAAGTCCACCCTGTCTGCAGTGA
TGTTATTAAAACTCAGCCATTACCTGGAAGTAGTATAACTCATGGCGCACTTCAGGAAGGCGAC
TCTTTGGATAAACTCTATGCTCTTTGTGGTCAACATTGTCCGATACTAACTGTTATTATTCAAC
CTGTAAATGAGGAAGACCGAGGATTTGCTTATCGAAAAGATTCCGATATTGAAAATTCTTTGGG
TTTTCAGTTATGGATGGAAATATATCCATTTCTGCTACAGTCAAAGAAAAACATGTTCACAAGT
GAGAGCAGGAAAGTGAATGTGGGCAAACAATTTACTGATAATGCCATTGGTAATCTGTGTGATC
GACTTTATTTCAAAAACATGATTGACTTGGTGGATAAAAGAGCTAACTCTTTGAGGGAGGAAGT
TAATTTGAACAAAGTTCAATTATATTTAAAGAAAAGGTTTTCAGATCTTTTGCCTTCATCGTCA
CTAGTGGTGTGGGATATGAATTCTGTTTCACTAACCCCCAGCAACTGGACAGATAACTTCAAAA
GTGTTGATGAGAACAACTTCATTAACAGATTCCAGAACTCAAGAAAAAATCCCAACCAAGTAGT
AAGAGAAGAAAACAGTTGTCAATTCCATTGGGAGCTGTTTGGTCAAGTTTACTTGTTAGATATT
TGCCAAGTTGAGAAATCCTTACATATCAAAACCAGAAGTAAATTAGAAATATATTACATTTTAG
GGGGTGAAGTTCTTTTCATTTGGGAAGAAGAAAATCAATTAAATATAATAGATATTGAAAGCCC
TAATGATCAGAATGATTTATAACTTCAATATTAGCACAATCATTAGCTGTCAATTATGTTTTTC
CCATAAAAAGGTACAGTACATGGGATAGACTTTAGGCTAGATTCTCTAAGAATTCCTTGCTTTT
TCAAAATGAGAATACCTTGGAAAACATATTCTTGGATAAAATAAATTTGTTTTTTTTTATTGCT
TTGTTCCTCATTTTCTCAGTAATTAAAGTTTTATGTAGTTTTATTTTAAACATGCATTATTTTG
TATAGCTATGATTTTGTCTGATCAGGATATAAGAAATATGGCCAGGACAAGAAATATGTCCTTA
AAATGTTGTCAAGTGCATATATGATATTGAATATATTAGTGAATAAATATAACTTTAAACTATT
TCATTTAAGTGCTGATTGAATAAAAAGTATTATTAAAGCTCTCCAGTA

hide sequence

RefSeq Acc Id:

XM_017593623 ⟹ XP_017449112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,918,728 - 19,973,788 (+)	NCBI
mRatBN7.2	5	15,121,104 - 15,176,164 (+)	NCBI
Rnor_6.0	5	15,005,028 - 15,060,508 (+)	NCBI

Sequence:

show sequence

CAAACACGACTTCTTCCCATCACAGACAGGACAGTCTTATAGCAAGCTCAGCCTTTGGTCCAGA
TTCTTCTCTTGATGCAACACAGGGATTTCTGCATATGCTTGAGACATTGAAGGTCTCATCTAAA
ATGAGTGAGACACCTTCTACTAGTTTCTCCATGATTCGTCTGACTTCTTCTGAAGGTCAAGTTC
CTTCTCGCCATTCAAATGTCACTCATCCCACAGTGGCTAAACGCATCAGTTTCTATAAGAGCGG
AGATCCCCAGTTTGGTGGTGTTAGGGTGGTGGTCAACCCTCGTTCCTTTAAGACTTTTGATGCC
CTGCTAGACAATTTATCCAGGAAAGTGCCCTTGCCCTTTGGGGTGAGGAATATCAGCACGCCCC
GTGGACGGCACAGCATCACCAAGCTAGAGGAGCTAGAGGACGGCGAGTCTTATGTATGCTCCCA
CAATAAGAAGGTGCTTCCGGTTGACCTGGACAAGGCCCGCAGGCGCCCTCGGCCCTGGCTCAGT
AGTCGCTCTATAAGCACACATGTGAAGCTCCGCTCTGCTACTGCCACTATGCCCACCACCGCTC
CTGGCTTGTTTCGTGCCCCAAGGAGGCTTGTGGTCTTTCGGAACGGTGACCCAAAGACCAGGCG
TGTGGTCCTTCTTAGCCGGAGGATCACTCAGAGCTTCGAAGCCTTTCTACAGTACCTGACACAG
GTCATGCAGTATCCTGTGGCAAAGCTGTATGCCACAGACGGAAGAAAAGTTCCTAGTCTCCAAG
CAGTGATACTGAGCTCTGGAGCTGTGGTGGCAGCCGGAAGGGAGCCATTCAAACCAGGAAATTA
CGACATCCAAAAATACTTGCTTCCTGTCAAGTTACCAGGAATCTCTCATCGCGTGCACCGGAAG
GGAAAAGCCAAGATAGAAAAAAGAAAGATGAGCACACATTCAGTCCCAAGACCCCAGACTGATT
CCCTGGCCTCAGAGAAAACATATGATTGCTTTTCAGACTTTTCTGTAGCCCCTGAGAATTACCT
GGCCTTAGAGACACATGATTCTCAGACTCTATCAACATATCCTTCTGAAGATGGTGTTGAGAAA
TCGATAGTTTTTAATCAAGATGGTACTATGACGGTCGTGATGAAAGTTCGATTCAAGATAAAAG
AAGAAACTGTTAAGTGGACAACCACTGTCAATAGAGCTGATCTTTCTAATGATGATGAAAAGAG
TAAGATAAGTAGCTATCCTGGTAAAACAGAAGATCGATCGTCTAGTTTAAAGCTTGTGGTGCCA
TGCTCATTGTCTGAAGACATCACAGACACCACTCAGCAGGGCAGTTTGACAGAGGAAGAAAATA
CTCAAATGACAGAACAGCAGGCTCTGTCAAGTAGCTCTGCTGGCTGGGAGAATGCCTCCATGGA
GGTAGGCATTCAGGGAAGCCAGAAACAAGTGAAACACTTTTATAGACCCCCAACCCCTGGACCA
AGGAGAATGAGACAAAAGAAATCTGTGATAGGGACTGTCACCGTAGTATCTGAAACAGAGGTTC
AAGAAAAGCAGTTTTCTTATAGGGAAGAAAGAGAGGTTGGAGAAAAATCCAAGTACCACATGTT
TACACATTCTTGCAGCAAAATGTCCTCAGTATCTAATAAACTCGTTCAGATCAGTAGCGATGAT
GAGAGGGAGTCAGCATTAGAAAGAACAAAGGAAAGTGGACCGCTCAAGTCACATGCCATAAATG
CTGGTGCTATAGAAATTACAAGTCAGAGGGTCTTAAAGATGTGCCATAACAATGCTTTAGCGTC
AACTGTACCAGAGAACTCAGTTGTGGAAGAAGGCACAGATGACAGTGCCATATCAGGCAAAGCC
ACTATCAAGCACTTCAGAACTTGTGGTAATGCCAATGACAGCTTCAGTTCTACTACAGCAGATA
CAACTCTTACCTCAGGTAACAACTGTCCAAATGTCAGGACTATTTCTGAGGTTCCTTCTGTAGG
ATCTCCTGTGCTCACCACAGGACTTGTTAATGAATTTGCTCATTGTGGTTTAACAGAACATCCA
GGAAATGGAAGGCAGATTTCATCCCCTTTTGCCAGCAAAAAAAAGAAGAAATCTCAGCAGCGAA
TGATAACTTCCAAGGATAAGAAAAAAGTGATTGAAACCAAAGGAATCCCTAACAAAGTTGGGAA
AATACACAGAGCAGGAACAATTGCACAGGTGGTACTATTGCAAGATTCGGGTGGTCTGGATAAA
GAAGGGAGAGTTCGTGAGGAGGAACTTGACACAAGTCCTATGGTAATTGAATCACATGATATTT
TCCCCAAAGGTAATTCCAAATTTTCCAAGAATTTCCATAAAAACAAATTAAATACTGTTCAAAA
TCCTAAGACTCAAAAACTTTTAGCTAAAAGAAAATCAAGACCACTAAAGATTAAAAGCATAGGT
GAACTCAGAAAACAAGAGACTGGTCAAGAAGATAAAGTATTTCTCCATAGCGAATCTAAACTTT
GTGAAAGTAATTTGGAAAAACAAAGTTTACTTCATGTGTTTAGTAGTCTTGAGGAAGACCAGAA
AGCTTTGCATAGATCACAGTCACAAGTGGAGACAGTAACTGAAAATTGGAAAGGAATGACAAAA
AAGAGTTTAGTCCCAAAAGTTAATGATCTACACGTAACTGTAAGAAACCAGAGAAAACAAAAGG
GAGTTAAATTAAAGTCAGGTGCTACAGTAAGTGAACAGCATATTGCAACCAGGGCGGATCCCTT
AGCATCTTTGAAAAAACCTGATTTAACCGAGGGTATTCCCCATCACTCAGTTAAGAGCTATATA
CAGCGATGGTTGCAGAACATAAATCCATATCCAGATTTTGAGCACAGAAAGTCAGCTCCACTAG
GCCAAGATAGAAGTAATGTGGTAAATTATAACAGTAATGGTTTTCCGGAAAATAATCTGCCTAC
AACTTCTTCAAAAGGAAAGAGTTTTTTAATGGAAAGTAATAAGCGCAAAACTAAAAATGCCAAT
TGGAAAGGCAATAAAAATCAAGAGACAAGTAAATCTCTTGTTGTTAAAGATAATGGTGAACAGC
CTAATAAACATTCCTGTGAGAGCCAAGATGAGTCTCTGTATGATTCTTACTTGGGTCCTTTGCA
TGACAATTGTACTTTGTCACAGACCAGTATAAACGATCCTTGTACTAAAAGTCATTTATCTACT
GAAAAGTCAAGACCAGAAGTGAAGCTTGTTTACCAAGAAATGAACTTTTCCACAAAAAGGCAAA
CTCTTGAGGTTGCCATTCAGGTAGACACTATGGGAGAGAATGTTCCAAAAGACTTACTAGCTCT
GTTGCTCCAGCACCTGGAAGCTTTTATTCCTAATAATCAGAAGCATCAAAATGGAATTTCTCAA
CTACCAGGTTCATTAGCAGAGGTTGTCTTCCCTTCTGCAATATATAATTCATCCACAAATCTCC
TTCTGGCTTGGCTTTTGGTACTAAACCTAAAGAGAAATATGAATAGCTTCTGTCAAAGCGATGC
TCCTAAGACGACCAGCAGATCTTCAGAAACGGCTGCACTGTTGGATGTTCTGAAGCACGTCGCC
ATCACAGAGGAAGCCGATGACTTGAAGGCCGCTGTTGCCAACTTAGTGGAATCAACCAAAACTT
GCAGTGGACCCAGCGGGAGAGAACAAGATACGGCACCAGCAAATTGTATAGCAGCCAGCCTTCA
CAGTGTGGACAAGTGTAAGGAAAACAAGAGTACCCAGAAGAGCCTATTGGATGAAGGCTACTCT
GTCAGGGGGGACTGTGGCCCCGAGCTCTGTGTTTTAGAAATGGTTAGCAAGTCAAACAACACTC
CAAGTGAGGGGCATACTGTAAGCATGACTTATCCTCCAAAAGGGGTAAATAACCAAAATGATGC
CCTTTTCACTAGTAATGATAGTTCTACTATGAGCCAGCGTTCCACACACAATGCTTCTTTCCTA
GGAGAGGCCTGTTTACTTACAGATAGTTTGTGTTCCCATAAGGCTTGTGCCCAGAAGGACAACA
TCTATGAGGCAGCTTGCTTGAGTGATGAGACTCACATTCCCATCAGAGACTGCAAAACAATTGA
GTTCGTGAATTCAAAAGAAAACAAATGCACTGACAATCTGGAATTAACTGAAGAAATCAAAACT
GTTGACAAAGTTCCAAAAGACCTAAATATTTTGGCAGATTCTATAGATAAAAATGAATCTGATA
TATCAACTTCATCCCAAAATGTCAATAAGTTAAGTTCCCAAGGTATTTTCCTAAGCAAAACTCA
TCTAGATTCTGACAAGGACTATAGTCCTCTAGAAGAATTTCAAAATTGCCCACCTAAGAAAATT
GTGAATAAAAAGAAATCTGTTTCTTCTGATAAGGAAGATTCAAGGACTTCTGAAGAACCAAGGT
CAATAACCAATAGTGTGACATCAAGTGAAAGAAATGCCACTTCAGAATTAGAATCTTTTGAAGA
ATCAGAAAGTCAAGACACAGGTATCTTCAATATGAAGGTAAGGACTGAAGAAAAAGCTGCCAAG
GAGTCAATGCAAAAAGAATCAGAAGCTAGGATGAGTTTGGAATTGATAAACATATCAGGGAGGA
ATATTATAGAACAGGGAAGAAGAAATACTGCATTTCTGGAGACAACAGGTAGGGGGCAGGTGAC
ACCACCATCTTTAGTTTTTTGCTATGATTCTAATAAAAACACTGAAAAAGAGATGAGTGTAGGA
GAAACTAAGATGAGAGTTAAGAAGATAGTAGACAGCATGGAAAATGAAAGTTACACAGACTCTT
CACTTAATTGTAACAAACAGCACAGAAGTCCAGGGACCTTAGATTGGTCAGATTATGGATCAGA
CAGTGAGAGCCGATATCCTTGTAAAGCATTGAGCTATGAGCACAGTGATGACACCGGCCAAGAG
AGAGAGTACCCTAGAGGAATTGTGAGAAGGGCAATAGAAAAGCTTTATGGCAAAGCAGAGATTA
TCAAACCACCATTTTTCCATGGGTCTATACACAAATCTCAAGTTTGTCCTTATAATCCTGTGGA
AGTTCCGTGTGTTAAGAAAACACATTTTTATGAGTCTGAATGTCAGTCACTGGTCTCTTCTGAA
CAGGTATCTAGAAGTTCACTCATGTTGCAGGAATTCCAGGAGGAAAGACAATCTGAGGTTGATG
CCAATGGCATGGGAGACAGTTTTGGGGACAGCAGCATAGAAAAGGTTACAAAACCAAGTGAGCA
TGGCAGGGTCTTTATGGAAAAAGAGAAGGGAAAACTGATTGACAATGGCAAATGGCTCCTGAGA
GAAAATCATTTGTGGAGGGTGTCACTGGACAATCCTGGCATGTATGGCAATGCAGACACCACAT
CAGTGGATACACTAATGGATAAGAATAGCATTGAGGTGCCATATTCACATTTCGGAGAGTTGGC
TCCTGGTCCAACAATGGCTGAATTGTCCTCTTCAGAAATAGAGGAAATGACTCAACCCCTTGAA
GTGAAATGCAATTATTTTAACTTTCCTCATGGTAGTGACTCTGAGCCTTTTGGTGAAGATTTTC
TAGATGCACAGAATACAAACTGCCCCAAAGAGAAAATACCCAACCATCACAAAGAGGAGAAGCG
TAATTCTCCATCTGAAAGAACATGTACGCCTGTTACTCAAACCTTTGCTTCTGCTGGTAATAAA
GTCCACCCTGTCTGCAGTGATGTTATTAAAACTCAGCCATTACCTGGAAGTAGTATAACTCATG
GCGCACTTCAGGAAGGCGACTCTTTGGATAAACTCTATGCTCTTTGTGGTCAACATTGTCCGAT
ACTAACTGTTATTATTCAACCTGTAAATGAGGAAGACCGAGGATTTGCTTATCGAAAAGATTCC
GATATTGAAAATTCTTTGGGTTTTCAGTTATGGATGGAAATATATCCATTTCTGCTACAGTCAA
AGAAAAACATGTTCACAAGTGAGAGCAGGAAAGTGAATGTGGGCAAACAATTTACTGATAATGC
CATTGGTAATCTGTGTGATCGACTTTATTTCAAAAACATGATTGACTTGGTGGATAAAAGAGCT
AACTCTTTGAGGGAGGAAGTTAATTTGAACAAAGTTCAATTATATTTAAAGAAAAGGTTTTCAG
ATCTTTTGCCTTCATCGTCACTAGTGGTGTGGGATATGAATTCTGTTTCACTAACCCCCAGCAA
CTGGACAGATAACTTCAAAAGTGTTGATGAGAACAACTTCATTAACAGATTCCAGAACTCAAGA
AAAAATCCCAACCAAGTAGTAAGAGAAGAAAACAGTTGTCAATTCCATTGGGAGCTGTTTGGTC
AAGTTTACTTGTTAGATATTTGCCAAGTTGAGAAATCCTTACATATCAAAACCAGAAGTAAATT
AGAAATATATTACATTTTAGGGGGTGAAGTTCTTTTCATTTGGGAAGAAGAAAATCAATTAAAT
ATAATAGATATTGAAAGCCCTAATGATCAGAATGATTTATAACTTCAATATTAGCACAATCATT
AGCTGTCAATTATGTTTTTCCCATAAAAAGGTACAGTACATGGGATAGACTTTAGGCTAGATTC
TCTAAGAATTCCTTGCTTTTTCAAAATGAGAATACCTTGGAAAACATATTCTTGGATAAAATAA
ATTTGTTTTTTTTTATTGCTTTGTTCCTCATTTTCTCAGTAATTAAAGTTTTATGTAGTTTTAT
TTTAAACATGCATTATTTTGTATAGCTATGATTTTGTCTGATCAGGATATAAGAAATATGGCCA
GGACAAGAAATATGTCCTTAAAATGTTGTCAAGTGCATATATGATATTGAATATATTAGTGAAT
AAATATAACTTTAAACTATTTCATTTAAGTGCTGATTGAATAAAAAGTATTATTAAAGCTCTCC
AGTA

hide sequence

RefSeq Acc Id:

XM_039110769 ⟹ XP_038966697

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,918,752 - 20,380,811 (+)	NCBI
mRatBN7.2	5	15,121,129 - 15,582,363 (+)	NCBI

RefSeq Acc Id:

XM_039110770 ⟹ XP_038966698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,918,752 - 20,380,811 (+)	NCBI
mRatBN7.2	5	15,121,129 - 15,582,363 (+)	NCBI

RefSeq Acc Id:

XM_039110771 ⟹ XP_038966699

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,918,753 - 20,251,033 (+)	NCBI
mRatBN7.2	5	15,121,130 - 15,453,411 (+)	NCBI

RefSeq Acc Id:

XM_039110772 ⟹ XP_038966700

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,918,752 - 20,138,667 (+)	NCBI
mRatBN7.2	5	15,121,130 - 15,341,043 (+)	NCBI

RefSeq Acc Id:

XM_063288395 ⟹ XP_063144465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,918,743 - 20,380,811 (+)	NCBI

RefSeq Acc Id:

XM_063288396 ⟹ XP_063144466

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,918,752 - 20,380,811 (+)	NCBI

RefSeq Acc Id:

XM_063288397 ⟹ XP_063144467

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,918,743 - 20,251,033 (+)	NCBI

RefSeq Acc Id:

XM_063288398 ⟹ XP_063144468

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,918,752 - 20,150,322 (+)	NCBI

RefSeq Acc Id:

XM_063288399 ⟹ XP_063144469

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	19,918,751 - 20,072,474 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001182605	(Get FASTA)	NCBI Sequence Viewer
	XP_008761780	(Get FASTA)	NCBI Sequence Viewer
	XP_017449112	(Get FASTA)	NCBI Sequence Viewer
	XP_038966697	(Get FASTA)	NCBI Sequence Viewer
	XP_038966698	(Get FASTA)	NCBI Sequence Viewer
	XP_038966699	(Get FASTA)	NCBI Sequence Viewer
	XP_038966700	(Get FASTA)	NCBI Sequence Viewer
	XP_063144465	(Get FASTA)	NCBI Sequence Viewer
	XP_063144466	(Get FASTA)	NCBI Sequence Viewer
	XP_063144467	(Get FASTA)	NCBI Sequence Viewer
	XP_063144468	(Get FASTA)	NCBI Sequence Viewer
	XP_063144469	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM11596	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000040735
	ENSRNOP00000040735.4
	ENSRNOP00000094773
	ENSRNOP00000094773.1

RefSeq Acc Id:

NP_001182605 ⟸ NM_001195676

- UniProtKB:

D4ABP8 (UniProtKB/TrEMBL), A6JFK0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSETPSTSFSMIRLTSSEGQVPSRHSNVTHPTVAKRISFYKSGDPQFGGVRVVVNPRSFKTFDA
LLDNLSRKVPLPFGVRNISTPRGRHSITKLEELEDGESYVCSHNKKVLPVDLDKARRRPRPWLS
SRSISTHVKLRSATATMPTTAPGLFRAPRRLVVFRNGDPKTRRVVLLSRRITQSFEAFLQYLTQ
VMQYPVAKLYATDGRKVPSLQAVILSSGAVVAAGREPFKPGNYDIQKYLLPVKLPGISHRVHRK
GKAKIEKRKMSTHSVPRPQTDSLASEKTYDCFSDFSVAPENYLALETHDSQTLSTYPSEDGVEK
SIVFNQDGTMTVVMKVRFKIKEETVKWTTTVNRADLSNDDEKSKISSYPGKTEDRSSSLKLVVP
CSLSEDITDTTQQGSLTEEENTQMTEQQALSSSSAGWENASMEVGIQGSQKQVKHFYRPPTPGP
RRMRQKKSVIGTVTVVSETEVQEKQFSYREEREVGEKSKYHMFTHSCSKMSSVSNKLVQISSDD
ERESALERTKESGPLKSHAINAGAIEITSQRVLKMCHNNALASTVPENSVVEEGTDDSAISGKA
TIKHFRTCGNANDSFSSTTADTTLTSGNNCPNVRTISEVPSVGSPVLTTGLVNEFAHCGLTEHP
GNGRQISSPFASKKKKKSQQRMITSKDKKKVIETKGIPNKVGKIHRAGTIAQVVLLQDSGGLDK
EGRVREEELDTSPMVIESHDIFPKGNSKFSKNFHKNKLNTVQNPKTQKLLAKRKSRPLKIKSIG
ELRKQETGQEDKVFLHSESKLCESNLEKQSLLHVFSSLEEDQKALHRSQSQVETVTENWKGMTK
KSLVPKVNDLHVTVRNQRKQKGVKLKSGATVSEQHIATRADPLASLKKPDLTEGIPHHSVKSYI
QRWLQNINPYPDFEHRKSAPLGQDRSNVVNYNSNGFPENNLPTTSSKGKSFLMESNKRKTKNAN
WKGNKNQETSKSLVVKDNGEQPNKHSCESQDESLYDSYLGPLHDNCTLSQTSINDPCTKSHLST
EKSRPEVKLVYQEMNFSTKRQTLEVAIQVDTMGENVPKDLLALLLQHLEAFIPNNQKHQNGISQ
LPGSLAEVVFPSAIYNSSTNLLLAWLLVLNLKRNMNSFCQSDAPKTTSRSSETAALLDVLKHVA
ITEEADDLKAAVANLVESTKTCSGPSGREQDTAPANCIAASLHSVDKCKENKSTQKSLLDEGYS
VRGDCGPELCVLEMVSKSNNTPSEGHTVSMTYPPKGVNNQNDALFTSNDSSTMSQRSTHNASFL
GEACLLTDSLCSHKACAQKDNIYEAACLSDETHIPIRDCKTIEFVNSKENKCTDNLELTEEIKT
VDKVPKDLNILADSIDKNESDISTSSQNVNKLSSQGIFLSKTHLDSDKDYSPLEEFQNCPPKKI
VNKKKSVSSDKEDSRTSEEPRSITNSVTSSERNATSELESFEESESQDTGIFNMKVRTEEKAAK
ESMQKESEARMSLELINISGRNIIEQGRRNTAFLETTGRGQVTPPSLVFCYDSNKNTEKEMSVG
ETKMRVKKIVDSMENESYTDSSLNCNKQHRSPGTLDWSDYGSDSESRYPCKALSYEHSDDTGQE
REYPRGIVRRAIEKLYGKAEIIKPPFFHGSIHKSQVCPYNPVEVPCVKKTHFYESECQSLVSSE
QVSRSSLMLQEFQEERQSEVDANGMGDSFGDSSIEKVTKPSEHGRVFMEKEKGKLIDNGKWLLR
ENHLWRVSLDNPGMYGNADTTSVDTLMDKNSIEVPYSHFGELAPGPTMAELSSSEIEEMTQPLE
VKCNYFNFPHGSDSEPFGEDFLDAQNTNCPKEKIPNHHKEEKRNSPSERTCTPVTQTFASAGNK
VHPVCSDVIKTQPLPGSSITHGALQEGDSLDKLYALCGQHCPILTVIIQPVNEEDRGFAYRKDS
DIENSLGFQLWMEIYPFLLQSKKNMFTSESRKVNVGKQFTDNAIGNLCDRLYFKNMIDLVDKRA
NSLREEVNLNKVQLYLKKRFSDLLPSSSLVVWDMNSVSLTPSNWTDNFKSVDENNFINRFQNSR
KNPNQVVREENSCQFHWELFGQVYLLDICQVEKSLHIKTRSKLEIYYILGGEVLFIWEEENQLN
IIDIESPNDQNDL

hide sequence

RefSeq Acc Id:

XP_008761780 ⟸ XM_008763558

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDYKLQLSTMPGISSNIFLSKVSSKMSETPSTSFSMIRLTSSEGQVPSRHSNVTHPTVAKRISF
YKSGDPQFGGVRVVVNPRSFKTFDALLDNLSRKVPLPFGVRNISTPRGRHSITKLEELEDGESY
VCSHNKKVLPVDLDKARRRPRPWLSSRSISTHVKLRSATATMPTTAPGLFRAPRRLVVFRNGDP
KTRRVVLLSRRITQSFEAFLQYLTQVMQYPVAKLYATDGRKVPSLQAVILSSGAVVAAGREPFK
PGNYDIQKYLLPVKLPGISHRVHRKGKAKIEKRKMSTHSVPRPQTDSLASEKTYDCFSDFSVAP
ENYLALETHDSQTLSTYPSEDGVEKSIVFNQDGTMTVVMKVRFKIKEETVKWTTTVNRADLSND
DEKSKISSYPGKTEDRSSSLKLVVPCSLSEDITDTTQQGSLTEEENTQMTEQQALSSSSAGWEN
ASMEVGIQGSQKQVKHFYRPPTPGPRRMRQKKSVIGTVTVVSETEVQEKQFSYREEREVGEKSK
YHMFTHSCSKMSSVSNKLVQISSDDERESALERTKESGPLKSHAINAGAIEITSQRVLKMCHNN
ALASTVPENSVVEEGTDDSAISGKATIKHFRTCGNANDSFSSTTADTTLTSGNNCPNVRTISEV
PSVGSPVLTTGLVNEFAHCGLTEHPGNGRQISSPFASKKKKKSQQRMITSKDKKKVIETKGIPN
KVGKIHRAGTIAQVVLLQDSGGLDKEGRVREEELDTSPMVIESHDIFPKGNSKFSKNFHKNKLN
TVQNPKTQKLLAKRKSRPLKIKSIGELRKQETGQEDKVFLHSESKLCESNLEKQSLLHVFSSLE
EDQKALHRSQSQVETVTENWKGMTKKSLVPKVNDLHVTVRNQRKQKGVKLKSGATVSEQHIATR
ADPLASLKKPDLTEGIPHHSVKSYIQRWLQNINPYPDFEHRKSAPLGQDRSNVVNYNSNGFPEN
NLPTTSSKGKSFLMESNKRKTKNANWKGNKNQETSKSLVVKDNGEQPNKHSCESQDESLYDSYL
GPLHDNCTLSQTSINDPCTKSHLSTEKSRPEVKLVYQEMNFSTKRQTLEVAIQVDTMGENVPKD
LLALLLQHLEAFIPNNQKHQNGISQLPGSLAEVVFPSAIYNSSTNLLLAWLLVLNLKRNMNSFC
QSDAPKTTSRSSETAALLDVLKHVAITEEADDLKAAVANLVESTKTCSGPSGREQDTAPANCIA
ASLHSVDKCKENKSTQKSLLDEGYSVRGDCGPELCVLEMVSKSNNTPSEGHTVSMTYPPKGVNN
QNDALFTSNDSSTMSQRSTHNASFLGEACLLTDSLCSHKACAQKDNIYEAACLSDETHIPIRDC
KTIEFVNSKENKCTDNLELTEEIKTVDKVPKDLNILADSIDKNESDISTSSQNVNKLSSQGIFL
SKTHLDSDKDYSPLEEFQNCPPKKIVNKKKSVSSDKEDSRTSEEPRSITNSVTSSERNATSELE
SFEESESQDTGIFNMKVRTEEKAAKESMQKESEARMSLELINISGRNIIEQGRRNTAFLETTGR
GQVTPPSLVFCYDSNKNTEKEMSVGETKMRVKKIVDSMENESYTDSSLNCNKQHRSPGTLDWSD
YGSDSESRYPCKALSYEHSDDTGQEREYPRGIVRRAIEKLYGKAEIIKPPFFHGSIHKSQVCPY
NPVEVPCVKKTHFYESECQSLVSSEQVSRSSLMLQEFQEERQSEVDANGMGDSFGDSSIEKVTK
PSEHGRVFMEKEKGKLIDNGKWLLRENHLWRVSLDNPGMYGNADTTSVDTLMDKNSIEVPYSHF
GELAPGPTMAELSSSEIEEMTQPLEVKCNYFNFPHGSDSEPFGEDFLDAQNTNCPKEKIPNHHK
EEKRNSPSERTCTPVTQTFASAGNKVHPVCSDVIKTQPLPGSSITHGALQEGDSLDKLYALCGQ
HCPILTVIIQPVNEEDRGFAYRKDSDIENSLGFQLWMEIYPFLLQSKKNMFTSESRKVNVGKQF
TDNAIGNLCDRLYFKNMIDLVDKRANSLREEVNLNKVQLYLKKRFSDLLPSSSLVVWDMNSVSL
TPSNWTDNFKSVDENNFINRFQNSRKNPNQVVREENSCQFHWELFGQVYLLDICQVEKSLHIKT
RSKLEIYYILGGEVLFIWEEENQLNIIDIESPNDQNDL

hide sequence

RefSeq Acc Id:

XP_017449112 ⟸ XM_017593623

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLETLKVSSKMSETPSTSFSMIRLTSSEGQVPSRHSNVTHPTVAKRISFYKSGDPQFGGVRVVV
NPRSFKTFDALLDNLSRKVPLPFGVRNISTPRGRHSITKLEELEDGESYVCSHNKKVLPVDLDK
ARRRPRPWLSSRSISTHVKLRSATATMPTTAPGLFRAPRRLVVFRNGDPKTRRVVLLSRRITQS
FEAFLQYLTQVMQYPVAKLYATDGRKVPSLQAVILSSGAVVAAGREPFKPGNYDIQKYLLPVKL
PGISHRVHRKGKAKIEKRKMSTHSVPRPQTDSLASEKTYDCFSDFSVAPENYLALETHDSQTLS
TYPSEDGVEKSIVFNQDGTMTVVMKVRFKIKEETVKWTTTVNRADLSNDDEKSKISSYPGKTED
RSSSLKLVVPCSLSEDITDTTQQGSLTEEENTQMTEQQALSSSSAGWENASMEVGIQGSQKQVK
HFYRPPTPGPRRMRQKKSVIGTVTVVSETEVQEKQFSYREEREVGEKSKYHMFTHSCSKMSSVS
NKLVQISSDDERESALERTKESGPLKSHAINAGAIEITSQRVLKMCHNNALASTVPENSVVEEG
TDDSAISGKATIKHFRTCGNANDSFSSTTADTTLTSGNNCPNVRTISEVPSVGSPVLTTGLVNE
FAHCGLTEHPGNGRQISSPFASKKKKKSQQRMITSKDKKKVIETKGIPNKVGKIHRAGTIAQVV
LLQDSGGLDKEGRVREEELDTSPMVIESHDIFPKGNSKFSKNFHKNKLNTVQNPKTQKLLAKRK
SRPLKIKSIGELRKQETGQEDKVFLHSESKLCESNLEKQSLLHVFSSLEEDQKALHRSQSQVET
VTENWKGMTKKSLVPKVNDLHVTVRNQRKQKGVKLKSGATVSEQHIATRADPLASLKKPDLTEG
IPHHSVKSYIQRWLQNINPYPDFEHRKSAPLGQDRSNVVNYNSNGFPENNLPTTSSKGKSFLME
SNKRKTKNANWKGNKNQETSKSLVVKDNGEQPNKHSCESQDESLYDSYLGPLHDNCTLSQTSIN
DPCTKSHLSTEKSRPEVKLVYQEMNFSTKRQTLEVAIQVDTMGENVPKDLLALLLQHLEAFIPN
NQKHQNGISQLPGSLAEVVFPSAIYNSSTNLLLAWLLVLNLKRNMNSFCQSDAPKTTSRSSETA
ALLDVLKHVAITEEADDLKAAVANLVESTKTCSGPSGREQDTAPANCIAASLHSVDKCKENKST
QKSLLDEGYSVRGDCGPELCVLEMVSKSNNTPSEGHTVSMTYPPKGVNNQNDALFTSNDSSTMS
QRSTHNASFLGEACLLTDSLCSHKACAQKDNIYEAACLSDETHIPIRDCKTIEFVNSKENKCTD
NLELTEEIKTVDKVPKDLNILADSIDKNESDISTSSQNVNKLSSQGIFLSKTHLDSDKDYSPLE
EFQNCPPKKIVNKKKSVSSDKEDSRTSEEPRSITNSVTSSERNATSELESFEESESQDTGIFNM
KVRTEEKAAKESMQKESEARMSLELINISGRNIIEQGRRNTAFLETTGRGQVTPPSLVFCYDSN
KNTEKEMSVGETKMRVKKIVDSMENESYTDSSLNCNKQHRSPGTLDWSDYGSDSESRYPCKALS
YEHSDDTGQEREYPRGIVRRAIEKLYGKAEIIKPPFFHGSIHKSQVCPYNPVEVPCVKKTHFYE
SECQSLVSSEQVSRSSLMLQEFQEERQSEVDANGMGDSFGDSSIEKVTKPSEHGRVFMEKEKGK
LIDNGKWLLRENHLWRVSLDNPGMYGNADTTSVDTLMDKNSIEVPYSHFGELAPGPTMAELSSS
EIEEMTQPLEVKCNYFNFPHGSDSEPFGEDFLDAQNTNCPKEKIPNHHKEEKRNSPSERTCTPV
TQTFASAGNKVHPVCSDVIKTQPLPGSSITHGALQEGDSLDKLYALCGQHCPILTVIIQPVNEE
DRGFAYRKDSDIENSLGFQLWMEIYPFLLQSKKNMFTSESRKVNVGKQFTDNAIGNLCDRLYFK
NMIDLVDKRANSLREEVNLNKVQLYLKKRFSDLLPSSSLVVWDMNSVSLTPSNWTDNFKSVDEN
NFINRFQNSRKNPNQVVREENSCQFHWELFGQVYLLDICQVEKSLHIKTRSKLEIYYILGGEVL
FIWEEENQLNIIDIESPNDQNDL

hide sequence

Ensembl Acc Id:

ENSRNOP00000040735 ⟸ ENSRNOT00000047093

RefSeq Acc Id:	XP_038966697 ⟸ XM_039110769
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038966698 ⟸ XM_039110770
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038966699 ⟸ XM_039110771
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038966700 ⟸ XM_039110772
- Peptide Label:	isoform X10

Ensembl Acc Id:

ENSRNOP00000094773 ⟸ ENSRNOT00000108094

RefSeq Acc Id:	XP_063144465 ⟸ XM_063288395
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6GLB3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063144467 ⟸ XM_063288397
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063144469 ⟸ XM_063288399
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063144466 ⟸ XM_063288396
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063144468 ⟸ XM_063288398
- Peptide Label:	isoform X9

Protein Domains

Doublecortin PLAT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ABP8-F1-model_v2	AlphaFold	D4ABP8	1-2125	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1596713	AgrOrtholog
BioCyc Gene	G2FUF-42144	BioCyc
Ensembl Genes	ENSRNOG00000008807	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000047093	ENTREZGENE
	ENSRNOT00000047093.6	UniProtKB/TrEMBL
	ENSRNOT00000108094	ENTREZGENE
	ENSRNOT00000108094.2	UniProtKB/TrEMBL
Gene3D-CATH	2.80.10.50	UniProtKB/TrEMBL
	3.10.20.230	UniProtKB/TrEMBL
	Catalase core domain	UniProtKB/TrEMBL
	PLAT/LH2 domain	UniProtKB/TrEMBL
InterPro	DCX	UniProtKB/TrEMBL
	Doublecortin_dom_sf	UniProtKB/TrEMBL
	IL1/FGF	UniProtKB/TrEMBL
	Inner_ear_hair_cell_LOXHD	UniProtKB/TrEMBL
	PLAT/LH2_dom	UniProtKB/TrEMBL
	PLAT/LH2_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:681377	UniProtKB/TrEMBL
NCBI Gene	681377	ENTREZGENE
PANTHER	LIPOXYGENASE HOMOLOGY DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	OXYGEN-REGULATED PROTEIN 1	UniProtKB/TrEMBL
	PROTEIN CBG12474	UniProtKB/TrEMBL
	PTHR23005	UniProtKB/TrEMBL
Pfam	DCX	UniProtKB/TrEMBL
	PLAT	UniProtKB/TrEMBL
PhenoGen	Rp1	PhenoGen
PROSITE	PLAT	UniProtKB/TrEMBL
	PS50309	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008807	RatGTEx
SMART	DCX	UniProtKB/TrEMBL
	LH2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49723	UniProtKB/TrEMBL
	SSF50353	UniProtKB/TrEMBL
	SSF89837	UniProtKB/TrEMBL
UniProt	A0A8I6GLB3	ENTREZGENE, UniProtKB/TrEMBL
	A6JFK0	ENTREZGENE, UniProtKB/TrEMBL
	D4ABP8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Rp1	RP1, axonemal microtubule associated	LOC102552996	uncharacterized LOC102552996	Data merged from RGD:7560640	737654	PROVISIONAL
2017-03-27	Rp1	RP1, axonemal microtubule associated	Rp1	retinitis pigmentosa 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-29	LOC102552996	uncharacterized LOC102552996	RGD1560182	similar to lipoxygenase homology domains 1	Data merged from RGD:1560182	737654	PROVISIONAL
2015-03-16	Rp1	retinitis pigmentosa 1	Rp1	retinitis pigmentosa 1 (human)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-12-17	LOC102552996	uncharacterized LOC102552996			Symbol and Name status set to provisional	70820	PROVISIONAL
2009-12-15	Rp1	retinitis pigmentosa 1 (human)	Rp1h	retinitis pigmentosa 1 homolog (human)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1560182	similar to lipoxygenase homology domains 1	RGD1560182_predicted	similar to lipoxygenase homology domains 1 (predicted)	'predicted' is removed	2292626	APPROVED
2008-03-14	Rp1h	retinitis pigmentosa 1 homolog (human)	Rp1h	retinitis pigmentosa 1 (autosomal dominant)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-11	Rp1h	retinitis pigmentosa 1 (autosomal dominant)	Rp1	retinitis pigmentosa 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Rp1	retinitis pigmentosa 1	LOC681377	similar to Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC681377	similar to Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)	LOC684060	similar to Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)	Data merged from RGD:1595186	1643240	APPROVED
2006-11-20	LOC681377	similar to Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC684060	similar to Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-03-07	RGD1560182_predicted	similar to lipoxygenase homology domains 1 (predicted)	LOC362480	similar to lipoxygenase homology domains 1	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC362480	similar to lipoxygenase homology domains 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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