Ackr4 (atypical chemokine receptor 4) - Rat Genome Database

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Gene: Ackr4 (atypical chemokine receptor 4) Rattus norvegicus
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Symbol: Ackr4
Name: atypical chemokine receptor 4
RGD ID: 1596453
Description: Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to be located in plasma membrane. Predicted to be active in external side of plasma membrane. Orthologous to human ACKR4 (atypical chemokine receptor 4); INTERACTS WITH 6-propyl-2-thiouracil; alpha-Zearalanol; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C-C chemokine receptor type 11; Ccrl1; chemokine (C-C motif) receptor-like 1; LOC685243; similar to C-C chemokine receptor type 11 (C-C CKR-11) (CC-CKR-11) (CCR-11) (Chemokine receptor-like 1) (CCRL1) (CCX CKR)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88113,595,325 - 113,599,762 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8113,595,293 - 113,602,372 (-)EnsemblGRCr8
mRatBN7.28104,716,537 - 104,720,972 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8104,716,067 - 104,723,617 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8110,363,627 - 110,368,048 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08108,562,820 - 108,567,241 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08106,405,522 - 106,409,943 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08112,643,838 - 112,651,668 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8112,644,222 - 112,648,880 (-)Ensemblrn6Rnor6.0
Rnor_5.08112,031,054 - 112,038,505 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48109,160,740 - 109,161,792 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8104,081,309 - 104,089,096 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23341447  


Genomics

Comparative Map Data
Ackr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88113,595,325 - 113,599,762 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8113,595,293 - 113,602,372 (-)EnsemblGRCr8
mRatBN7.28104,716,537 - 104,720,972 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8104,716,067 - 104,723,617 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8110,363,627 - 110,368,048 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08108,562,820 - 108,567,241 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08106,405,522 - 106,409,943 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08112,643,838 - 112,651,668 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8112,644,222 - 112,648,880 (-)Ensemblrn6Rnor6.0
Rnor_5.08112,031,054 - 112,038,505 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48109,160,740 - 109,161,792 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8104,081,309 - 104,089,096 (-)NCBICelera
Cytogenetic Map8q32NCBI
ACKR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383132,597,270 - 132,602,644 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3132,597,270 - 132,618,967 (+)Ensemblhg38GRCh38
GRCh373132,316,114 - 132,321,488 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363133,798,784 - 133,804,072 (+)NCBIBuild 36Build 36hg18NCBI36
Celera3130,742,371 - 130,746,875 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3129,695,504 - 129,700,778 (+)NCBIHuRef
CHM1_13132,279,096 - 132,284,503 (+)NCBICHM1_1
T2T-CHM13v2.03135,341,777 - 135,347,152 (+)NCBIT2T-CHM13v2.0
Ackr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399103,974,881 - 104,003,842 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9103,961,356 - 104,004,132 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm389104,097,682 - 104,126,643 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9104,084,157 - 104,126,933 (-)Ensemblmm10GRCm38
MGSCv379104,000,468 - 104,028,973 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369103,956,488 - 103,985,278 (-)NCBIMGSCv36mm8
Celera9103,651,061 - 103,679,739 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map956.47NCBI
Ackr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555015,922,734 - 5,928,735 (-)Ensembl
ChiLan1.0NW_0049555015,922,727 - 5,928,735 (-)NCBIChiLan1.0ChiLan1.0
ACKR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22130,530,134 - 130,555,081 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13130,547,785 - 130,558,393 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03129,670,181 - 129,675,026 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13137,146,882 - 137,152,329 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3137,150,087 - 137,151,139 (+)EnsemblpanPan2panpan1.1
ACKR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12329,586,250 - 29,591,627 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2329,589,767 - 29,590,819 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2329,560,679 - 29,566,040 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02330,099,642 - 30,105,004 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2330,099,854 - 30,105,000 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12329,796,211 - 29,801,785 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02329,853,762 - 29,859,123 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02330,101,484 - 30,106,840 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ackr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560269,191,614 - 69,196,409 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365295,955,300 - 5,956,352 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365295,950,451 - 5,957,019 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACKR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1373,772,392 - 73,777,805 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11373,773,862 - 73,777,770 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21381,345,522 - 81,349,419 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACKR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11557,664,659 - 57,670,334 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1557,665,407 - 57,666,459 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604130,652,568 - 30,658,050 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ackr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247308,733,586 - 8,738,961 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247308,732,124 - 8,738,968 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ackr4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1895,413,238 - 95,414,785 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ackr4
48 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:13
Count of miRNA genes:12
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000015265
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8111249511117802327Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
BQ205714  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28104,719,597 - 104,719,785 (+)MAPPERmRatBN7.2
Rnor_6.08112,646,962 - 112,647,149NCBIRnor6.0
Rnor_5.08112,034,122 - 112,034,309UniSTSRnor5.0
RGSC_v3.48109,163,282 - 109,163,469UniSTSRGSC3.4
Celera8104,084,459 - 104,084,646UniSTS
RH 3.4 Map81157.0UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 148 91 90 59 82 59 6 339 182 11 127 74 92 31 9 9

Sequence


Ensembl Acc Id: ENSRNOT00000015265   ⟹   ENSRNOP00000061118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8113,595,295 - 113,599,933 (-)Ensembl
mRatBN7.2 Ensembl8104,716,067 - 104,721,140 (-)Ensembl
Rnor_6.0 Ensembl8112,644,222 - 112,648,880 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119921   ⟹   ENSRNOP00000085672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8113,595,305 - 113,602,372 (-)Ensembl
mRatBN7.2 Ensembl8104,716,067 - 104,723,617 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000168697   ⟹   ENSRNOP00000112604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8113,595,293 - 113,601,096 (-)Ensembl
RefSeq Acc Id: NM_001399385   ⟹   NP_001386314
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88113,595,329 - 113,599,762 (-)NCBI
mRatBN7.28104,716,537 - 104,720,972 (-)NCBI
RefSeq Acc Id: XM_063266147   ⟹   XP_063122217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88113,595,325 - 113,599,761 (-)NCBI
Ensembl Acc Id: ENSRNOP00000061118   ⟸   ENSRNOT00000015265
Ensembl Acc Id: ENSRNOP00000085672   ⟸   ENSRNOT00000119921
RefSeq Acc Id: NP_001386314   ⟸   NM_001399385
- UniProtKB: G3V9V6 (UniProtKB/TrEMBL),   A6I2L5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122217   ⟸   XM_063266147
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000112604   ⟸   ENSRNOT00000168697
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9V6-F1-model_v2 AlphaFold G3V9V6 1-397 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596453 AgrOrtholog
BioCyc Gene G2FUF-29295 BioCyc
Ensembl Genes ENSRNOG00000011478 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015265 ENTREZGENE
  ENSRNOT00000015265.7 UniProtKB/TrEMBL
  ENSRNOT00000119921 ENTREZGENE
  ENSRNOT00000119921.2 UniProtKB/TrEMBL
  ENSRNOT00000168697.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  Chemokine_CCR11 UniProtKB/TrEMBL
  Chemokine_rcpt UniProtKB/TrEMBL
  GPCR1 UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
NCBI Gene 685243 ENTREZGENE
PANTHER ATYPICAL CHEMOKINE RECEPTOR 4 UniProtKB/TrEMBL
  CELL ADHESION MOLECULE UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PhenoGen Ackr4 PhenoGen
PRINTS CCCHEMOKINER UniProtKB/TrEMBL
  CHEMOKINER11 UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011478 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0ABK0LNL0_RAT UniProtKB/TrEMBL
  A6I2L5 ENTREZGENE, UniProtKB/TrEMBL
  G3V9V6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-31 Ackr4  atypical chemokine receptor 4  Ccrl1  chemokine (C-C motif) receptor-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-21 Ccrl1  chemokine (C-C motif) receptor-like 1  LOC685243  similar to C-C chemokine receptor type 11 (C-C CKR-11) (CC-CKR-11) (CCR-11) (Chemokine receptor-like 1) (CCRL1) (CCX CKR)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685243  similar to C-C chemokine receptor type 11 (C-C CKR-11) (CC-CKR-11) (CCR-11) (Chemokine receptor-like 1) (CCRL1) (CCX CKR)  LOC684092  similar to C-C chemokine receptor type 11 (C-C CKR-11) (CC-CKR-11) (CCR-11) (Chemokine receptor-like 1) (CCRL1) (CCX CKR)  Data merged from RGD:1595156 1643240 APPROVED
2006-11-20 LOC685243  similar to C-C chemokine receptor type 11 (C-C CKR-11) (CC-CKR-11) (CCR-11) (Chemokine receptor-like 1) (CCRL1) (CCX CKR)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC684092  similar to C-C chemokine receptor type 11 (C-C CKR-11) (CC-CKR-11) (CCR-11) (Chemokine receptor-like 1) (CCRL1) (CCX CKR)      Symbol and Name status set to provisional 70820 PROVISIONAL