Taf1b (TATA-box binding protein associated factor, RNA polymerase I subunit B) - Rat Genome Database

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Gene: Taf1b (TATA-box binding protein associated factor, RNA polymerase I subunit B) Rattus norvegicus
Analyze
Symbol: Taf1b
Name: TATA-box binding protein associated factor, RNA polymerase I subunit B
RGD ID: 1596058
Description: Predicted to enable RNA polymerase I core promoter sequence-specific DNA binding activity. Predicted to be involved in RNA polymerase I preinitiation complex assembly and nucleolar large rRNA transcription by RNA polymerase I. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of RNA polymerase I core factor complex and RNA polymerase transcription factor SL1 complex. Human ortholog(s) of this gene implicated in Lynch syndrome and mismatch repair cancer syndrome. Orthologous to human TAF1B (TATA-box binding protein associated factor, RNA polymerase I subunit B); PARTICIPATES IN RNA polymerase I transcription pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC690450; RNA polymerase I-specific TBP-associated factor 63 kDa; similar to TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B; TAFI63; TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B; TATA box-binding protein-associated factor 1B; TATA box-binding protein-associated factor RNA polymerase I subunit B; TBP-associated factor 1B; transcription initiation factor SL1/TIF-IB subunit B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8646,845,571 - 46,923,209 (+)NCBIGRCr8
mRatBN7.2641,116,980 - 41,194,593 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl641,117,420 - 41,194,593 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx641,440,776 - 41,517,176 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0641,755,582 - 41,831,979 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0641,188,727 - 41,265,133 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0643,644,931 - 43,722,124 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl643,644,830 - 43,722,113 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0660,512,955 - 60,590,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4642,127,301 - 42,204,465 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera640,405,142 - 40,482,218 (+)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. TFIIB-related factors in RNA polymerase I transcription. Knutson BA and Hahn S, Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):265-73. doi: 10.1016/j.bbagrm.2012.08.003. Epub 2012 Aug 30.
3. Frameshift mutational target gene analysis identifies similarities and differences in constitutional mismatch repair-deficiency and Lynch syndrome. Maletzki C, etal., Mol Carcinog. 2017 Jul;56(7):1753-1764. doi: 10.1002/mc.22632. Epub 2017 Mar 30.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. RNA polymerase I activity is regulated at multiple steps in the transcription cycle: recent insights into factors that influence transcription elongation. Schneider DA Gene. 2012 Feb 10;493(2):176-84. doi: 10.1016/j.gene.2011.08.006. Epub 2011 Aug 26.
Additional References at PubMed
PMID:21921198   PMID:21921199   PMID:23376485  


Genomics

Comparative Map Data
Taf1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8646,845,571 - 46,923,209 (+)NCBIGRCr8
mRatBN7.2641,116,980 - 41,194,593 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl641,117,420 - 41,194,593 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx641,440,776 - 41,517,176 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0641,755,582 - 41,831,979 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0641,188,727 - 41,265,133 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0643,644,931 - 43,722,124 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl643,644,830 - 43,722,113 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0660,512,955 - 60,590,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4642,127,301 - 42,204,465 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera640,405,142 - 40,482,218 (+)NCBICelera
Cytogenetic Map6q16NCBI
TAF1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3829,843,442 - 9,934,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl29,843,443 - 9,934,416 (+)EnsemblGRCh38hg38GRCh38
GRCh3729,983,571 - 10,074,545 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3629,901,024 - 9,991,996 (+)NCBINCBI36Build 36hg18NCBI36
Build 3429,934,170 - 10,025,141NCBI
Celera29,899,495 - 9,990,471 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef29,834,383 - 9,925,321 (+)NCBIHuRef
CHM1_129,913,254 - 10,004,217 (+)NCBICHM1_1
T2T-CHM13v2.029,871,368 - 9,962,349 (+)NCBIT2T-CHM13v2.0
Taf1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391224,548,580 - 24,608,570 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1224,548,358 - 24,608,538 (+)EnsemblGRCm39 Ensembl
GRCm381224,498,581 - 24,558,571 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1224,498,359 - 24,558,539 (+)EnsemblGRCm38mm10GRCm38
MGSCv371225,183,446 - 25,243,436 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361225,087,711 - 25,147,443 (+)NCBIMGSCv36mm8
Celera1225,959,782 - 26,020,670 (+)NCBICelera
Cytogenetic Map12A1.3NCBI
cM Map128.49NCBI
Taf1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,359,112 - 5,394,707 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554875,359,132 - 5,394,564 (+)NCBIChiLan1.0ChiLan1.0
TAF1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212116,589,416 - 116,683,282 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A116,593,387 - 116,686,114 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A9,834,385 - 9,927,129 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A9,995,957 - 10,088,165 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A9,996,146 - 10,087,740 (+)Ensemblpanpan1.1panPan2
TAF1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1176,873,275 - 6,940,432 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl176,873,360 - 6,937,789 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha176,801,050 - 6,867,928 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0176,972,357 - 7,039,074 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl176,972,386 - 7,039,074 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1176,864,428 - 6,931,100 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0176,866,606 - 6,933,235 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0176,880,635 - 6,947,316 (+)NCBIUU_Cfam_GSD_1.0
Taf1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629251,363,192 - 51,438,879 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365326,117,864 - 6,184,138 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365326,118,241 - 6,194,506 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3126,527,385 - 126,586,274 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13126,527,381 - 126,586,403 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23134,954,600 - 135,003,444 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAF1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11497,704,251 - 97,787,738 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1497,704,187 - 97,787,639 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604514,527,198 - 14,612,118 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248655,088,926 - 5,128,289 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248655,089,425 - 5,128,228 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Taf1b
321 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:159
Count of miRNA genes:122
Interacting mature miRNAs:135
Transcripts:ENSRNOT00000006187
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat

Markers in Region
RH129928  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2641,194,276 - 41,194,460 (+)MAPPERmRatBN7.2
Rnor_6.0643,721,808 - 43,721,991NCBIRnor6.0
Rnor_5.0660,589,867 - 60,590,050UniSTSRnor5.0
RGSC_v3.4642,204,149 - 42,204,332UniSTSRGSC3.4
Celera640,481,902 - 40,482,085UniSTS
RH 3.4 Map6236.4UniSTS
Cytogenetic Map6q16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 4 22 16 16 16 61 18 27 8
Low 2 39 35 25 3 25 8 11 13 17 14 3 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000086798   ⟹   ENSRNOP00000069237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,117,420 - 41,194,592 (+)Ensembl
Rnor_6.0 Ensembl643,644,830 - 43,722,113 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111605   ⟹   ENSRNOP00000086818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,117,420 - 41,137,118 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113356   ⟹   ENSRNOP00000090154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl641,117,988 - 41,194,593 (+)Ensembl
RefSeq Acc Id: NM_001191107   ⟹   NP_001178036
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,846,052 - 46,923,209 (+)NCBI
mRatBN7.2641,117,433 - 41,194,593 (+)NCBI
Rnor_6.0643,644,931 - 43,722,124 (+)NCBI
Rnor_5.0660,512,955 - 60,590,183 (+)NCBI
Celera640,405,142 - 40,482,218 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239995   ⟹   XP_006240057
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,845,605 - 46,923,209 (+)NCBI
mRatBN7.2641,117,916 - 41,194,593 (+)NCBI
Rnor_6.0643,645,432 - 43,722,124 (+)NCBI
Rnor_5.0660,512,955 - 60,590,183 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112967   ⟹   XP_038968895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,845,601 - 46,923,209 (+)NCBI
mRatBN7.2641,116,980 - 41,194,593 (+)NCBI
RefSeq Acc Id: XM_039112968   ⟹   XP_038968896
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,847,826 - 46,923,209 (+)NCBI
mRatBN7.2641,120,822 - 41,194,593 (+)NCBI
RefSeq Acc Id: XM_039112970   ⟹   XP_038968898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,845,571 - 46,908,990 (+)NCBI
mRatBN7.2641,117,647 - 41,172,218 (+)NCBI
RefSeq Acc Id: XM_063262520   ⟹   XP_063118590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,845,592 - 46,923,209 (+)NCBI
RefSeq Acc Id: XM_063262521   ⟹   XP_063118591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,845,583 - 46,908,984 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001178036   ⟸   NM_001191107
- UniProtKB: D3ZYB7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006240057   ⟸   XM_006239995
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AA63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000069237   ⟸   ENSRNOT00000086798
RefSeq Acc Id: XP_038968895   ⟸   XM_039112967
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968898   ⟸   XM_039112970
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038968896   ⟸   XM_039112968
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000090154   ⟸   ENSRNOT00000113356
RefSeq Acc Id: ENSRNOP00000086818   ⟸   ENSRNOT00000111605
RefSeq Acc Id: XP_063118591   ⟸   XM_063262521
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063118590   ⟸   XM_063262520
- Peptide Label: isoform X1
Protein Domains
RRN7-type   Rrn7/TAF1B C-terminal cyclin   Rrn7/TAF1B N-terminal cyclin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZYB7-F1-model_v2 AlphaFold D3ZYB7 1-586 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694520
Promoter ID:EPDNEW_R5043
Type:single initiation site
Name:Taf1b_1
Description:TATA-box binding protein associated factor, RNA polymerase Isubunit B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0643,644,921 - 43,644,981EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596058 AgrOrtholog
BioCyc Gene G2FUF-38028 BioCyc
Ensembl Genes ENSRNOG00000061415 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055005758 UniProtKB/Swiss-Prot
  ENSRNOG00060009025 UniProtKB/Swiss-Prot
  ENSRNOG00065010293 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000086798 ENTREZGENE
  ENSRNOT00000086798.2 UniProtKB/Swiss-Prot
  ENSRNOT00000111605.1 UniProtKB/TrEMBL
  ENSRNOT00000113356.1 UniProtKB/TrEMBL
  ENSRNOT00055009293 UniProtKB/Swiss-Prot
  ENSRNOT00060015131 UniProtKB/Swiss-Prot
  ENSRNOT00065016628 UniProtKB/Swiss-Prot
InterPro Rrn7_cyclin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rrn7_cyclin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TAF1B/Rrn7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_Rrn7_Zf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:690450 UniProtKB/Swiss-Prot
NCBI Gene 690450 ENTREZGENE
PANTHER PTHR31576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Rrn7_cyclin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rrn7_cyclin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RRN7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Taf1b PhenoGen
RatGTEx ENSRNOG00000061415 RatGTEx
  ENSRNOG00055005758 RatGTEx
  ENSRNOG00060009025 RatGTEx
  ENSRNOG00065010293 RatGTEx
UniProt A0A8I6A728_RAT UniProtKB/TrEMBL
  A0A8I6AA63 ENTREZGENE, UniProtKB/TrEMBL
  D3ZYB7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Taf1b  TATA-box binding protein associated factor, RNA polymerase I subunit B  Taf1b  TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Taf1b  TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B  LOC690450  similar to TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC690450  similar to TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B  LOC686562  similar to TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B  Data merged from RGD:1596336 1643240 APPROVED
2006-11-20 LOC690450  similar to TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686562  similar to TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B      Symbol and Name status set to provisional 70820 PROVISIONAL