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Gene: Gnb1l (G protein subunit beta 1 like) Rattus norvegicus

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Symbol:

Gnb1l

Name:

G protein subunit beta 1 like

RGD ID:

1594165

Description:

Predicted to be involved in DNA damage checkpoint signaling. Predicted to act upstream of or within social behavior. Predicted to be located in cytoplasm and nucleus. Orthologous to human GNB1L (G protein subunit beta 1 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cobalt dichloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

guanine nucleotide binding protein (G protein), beta polypeptide 1-like; guanine nucleotide-binding protein subunit beta-like protein 1; LOC680266; similar to Guanine nucleotide-binding protein beta subunit-like protein 1 (G protein beta subunit-like protein 1) (WD40 repeat-containing protein deleted in VCFS) (WDVCF protein)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GNB1L (G protein subunit beta 1 like)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Mus musculus (house mouse):	Gnb1l (guanine nucleotide binding protein (G protein), beta polypeptide 1-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gnb1l (G protein subunit beta 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GNB1L (G protein subunit beta 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GNB1L (G protein subunit beta 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gnb1l (G protein subunit beta 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GNB1L (G protein subunit beta 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GNB1L (G protein subunit beta 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gnb1l (G protein subunit beta 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Gnb1l (G protein subunit beta 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EIF3B (eukaryotic translation initiation factor 3 subunit B)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	GNB1L (G protein subunit beta 1 like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gnb1l (guanine nucleotide binding protein (G protein), beta polypeptide 1-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gnb1l (guanine nucleotide binding protein (G protein), beta polypeptide 1-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG13192	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG13192	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ASA1	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	ASA1	Alliance	DIOPT (OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	C10B5.1	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	C10B5.1	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	gnb1l	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gnb1l	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	95,933,994 - 96,011,933 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	95,936,961 - 96,011,931 (-)	Ensembl				GRCr8
mRatBN7.2	11	82,425,301 - 82,507,836 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	82,432,627 - 82,507,466 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	91,162,240 - 91,236,127 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	83,823,444 - 83,897,343 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	82,876,958 - 82,950,851 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	86,575,229 - 86,655,614 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	86,577,339 - 86,655,602 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	89,675,000 - 89,751,589 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	84,427,112 - 84,489,259 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	81,207,933 - 81,284,763 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dilated cardiomyopathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

chlordecone (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dioxygen (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

methyl methanesulfonate (ISO)

okadaic acid (ISO)

paracetamol (EXP)

phenobarbital (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage checkpoint signaling (IEA,ISO)

DNA damage response (IEA,ISO)

social behavior (ISO)

Cellular Component

cytoplasm (IEA,ISO)

nucleus (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16684884	PMID:18775783

Genomics

Comparative Map Data

Gnb1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	95,933,994 - 96,011,933 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	95,936,961 - 96,011,931 (-)	Ensembl				GRCr8
mRatBN7.2	11	82,425,301 - 82,507,836 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	82,432,627 - 82,507,466 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	91,162,240 - 91,236,127 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	83,823,444 - 83,897,343 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	82,876,958 - 82,950,851 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	86,575,229 - 86,655,614 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	86,577,339 - 86,655,602 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	89,675,000 - 89,751,589 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	84,427,112 - 84,489,259 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	81,207,933 - 81,284,763 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

GNB1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	19,783,223 - 19,854,874 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	19,783,223 - 19,854,939 (-)	Ensembl			hg38	GRCh38
GRCh37	22	19,770,746 - 19,842,397 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	18,155,934 - 18,222,462 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	22	18,150,493 - 18,217,016	NCBI
Celera	22	3,628,001 - 3,694,531 (-)	NCBI		Celera
Cytogenetic Map	22	q11.21	NCBI
HuRef	22	3,395,439 - 3,461,970 (-)	NCBI		HuRef
CHM1_1	22	19,775,641 - 19,842,170 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	20,160,093 - 20,231,743 (-)	NCBI		T2T-CHM13v2.0

Gnb1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	18,316,029 - 18,385,430 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	18,317,463 - 18,385,429 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	18,497,386 - 18,566,680 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	18,498,713 - 18,566,679 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	18,498,861 - 18,566,772 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	18,412,451 - 18,480,242 (+)	NCBI		MGSCv36	mm8
Celera	16	19,073,334 - 19,140,949 (+)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	11.46	NCBI

Gnb1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955442	18,224,081 - 18,281,558 (+)	NCBI	ChiLan1.0	ChiLan1.0

GNB1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	29,406,924 - 29,481,835 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	31,954,576 - 32,029,477 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	2,542,925 - 2,616,201 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	18,222,195 - 18,289,580 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	18,222,195 - 18,289,580 (-)	Ensembl			panPan2	panpan1.1

GNB1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	29,454,954 - 29,511,019 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	29,454,054 - 29,510,792 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	29,409,099 - 29,468,597 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	30,854,602 - 30,913,902 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	30,854,654 - 30,913,895 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	28,902,503 - 28,961,823 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	28,531,032 - 28,587,259 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	29,613,402 - 29,672,707 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gnb1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	138,992,841 - 139,061,881 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936619	3,691,074 - 3,761,425 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936619	3,691,327 - 3,760,906 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GNB1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	51,305,039 - 51,343,029 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	51,306,561 - 51,343,040 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	54,943,213 - 54,979,683 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GNB1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	5,889,395 - 5,959,515 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	5,890,567 - 5,959,510 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666085	969,817 - 1,040,143 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gnb1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	418,519 - 489,529 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	418,912 - 489,057 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gnb1l
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	3,791,034 - 3,815,599 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	225
Count of miRNA genes:	130
Interacting mature miRNAs:	142
Transcripts:	ENSRNOT00000002596, ENSRNOT00000066150, ENSRNOT00000073377
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70208	Niddm22	Non-insulin dependent diabetes mellitus QTL 22	3.61		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	73308487	96070872	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	58928336	99753367	Rat
1549848	Bvd6	Brain ventricular dilatation QTL 6	3.1	0.0001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	79618519	99753367	Rat
10450831	Scl80	Serum cholesterol level QTL 80	4.7	0.01	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	11	90461781	96556255	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	73850894	99753367	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	54415391	96071021	Rat
1354656	Bvd3	Brain ventricular dilatation QTL 3	3.64	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	82951028	96351019	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	57754837	96071021	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	67962184	99753367	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	68599321	96497754	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	69855943	99753367	Rat
631506	Bp104	Blood pressure QTL 104	2.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	73308315	99753367	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	51071021	96071021	Rat

Markers in Region

D11Rat1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	11	95,955,159 - 95,955,328 (+)	Marker Load Pipeline
mRatBN7.2	11	82,450,825 - 82,450,994 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	86,593,428 - 86,593,596	NCBI	Rnor6.0
Rnor_5.0	11	89,693,199 - 89,693,367	UniSTS	Rnor5.0
RGSC_v3.4	11	84,443,165 - 84,443,333	UniSTS	RGSC3.4
RGSC_v3.4	11	84,443,164 - 84,443,333	RGD	RGSC3.4
Celera	11	81,226,132 - 81,226,300	UniSTS
RGSC_v3.1	11	84,483,762 - 84,483,930	RGD
RH 3.4 Map	11	703.5	UniSTS
RH 3.4 Map	11	703.5	RGD
SHRSP x BN Map	11	38.2299	RGD
SHRSP x BN Map	11	38.2299	UniSTS
Cytogenetic Map	11	q23	UniSTS

RH142985

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	82,503,449 - 82,503,643 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	86,651,450 - 86,651,643	NCBI	Rnor6.0
Rnor_5.0	11	89,745,902 - 89,746,095	UniSTS	Rnor5.0
RGSC_v3.4	11	84,496,817 - 84,497,010	UniSTS	RGSC3.4
Celera	11	81,280,599 - 81,280,792	UniSTS
RH 3.4 Map	11	701.4	UniSTS
Cytogenetic Map	11	q23	UniSTS

RH134799

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	11	89,744,175 - 89,744,362	NCBI	Rnor5.0
Rnor_5.0	16	53,583,176 - 53,583,363	NCBI	Rnor5.0
RGSC_v3.4	16	54,126,705 - 54,126,891	UniSTS	RGSC3.4
RGSC_v3.4	11	84,495,091 - 84,495,277	UniSTS	RGSC3.4
Celera	16	48,719,839 - 48,720,025	UniSTS
Celera	11	81,278,873 - 81,279,059	UniSTS
Cytogenetic Map	11	q23	UniSTS

RH137136

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	82,434,780 - 82,434,961 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	86,577,383 - 86,577,563	NCBI	Rnor6.0
Rnor_5.0	11	89,677,154 - 89,677,334	UniSTS	Rnor5.0
RGSC_v3.4	11	84,427,120 - 84,427,300	UniSTS	RGSC3.4
Celera	11	81,210,087 - 81,210,267	UniSTS
RH 3.4 Map	11	700.2	UniSTS
Cytogenetic Map	11	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	90	59	6	354	190	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001398877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005491494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002596 ⟹ ENSRNOP00000002596

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	11	86,577,339 - 86,655,482 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000073377 ⟹ ENSRNOP00000064268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	95,936,961 - 96,011,931 (-)	Ensembl
mRatBN7.2 Ensembl	11	82,432,627 - 82,507,466 (-)	Ensembl
Rnor_6.0 Ensembl	11	86,577,377 - 86,655,602 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000141470 ⟹ ENSRNOP00000102738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	95,936,961 - 95,963,252 (-)	Ensembl

RefSeq Acc Id:

NM_001398877 ⟹ NP_001385806

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	95,936,961 - 96,011,931 (-)	NCBI
mRatBN7.2	11	82,432,627 - 82,507,604 (-)	NCBI

RefSeq Acc Id:

XM_006248654 ⟹ XP_006248716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	95,936,961 - 96,011,933 (-)	NCBI
mRatBN7.2	11	82,432,627 - 82,507,836 (-)	NCBI
Rnor_6.0	11	86,575,229 - 86,655,614 (-)	NCBI
Rnor_5.0	11	89,675,000 - 89,751,589 (-)	NCBI

Sequence:

show sequence

CGGCGCAGGCGCGGCGGGCCGAGGTGCGCGCGCAGACCCGCGGGAAGGCTAACTTGGGGCGTGC
GGAGCTCCGGAGCGGGCACGTCGCGGGTGGCCGCGTACGCCGAGGGGGCGTGGCTGACGAGGCA
CCCGCAAGCTCCTAGGATCCGGCTGCGTCAGGCTTGCATCTCCGCGGCGGGGTGGCTGTAGGAT
CCTGCCCTCGGAAGTACGCCCCTCTGCCTGGTGTTCCTGAGCGGATCCTCTGACCCCGGCGGCC
CTCCTGGCGCAGTCTTAGGACTGCATTTACCTACATGGCAGCACCGTTCCCACCGCCGCCTAGT
CCCAGATTTGTCCTCCGAGGCACTCAGTCAGCTGTGAACACGCTGCACTTCTGCCCAGCACCCG
GTGCTGCAGAGAACCCACTCCTTTTCTCGGGGTCTCAGAATGGCCTAGTGCACATCTGGAGCCT
ACAGACAAGAAGAATAGTTGCCACTCTAAACGGCCACGGGGGCCAGGGTGTAACCTGGCTGAAG
ACACTGCCGCAGGGACAGCAGCTCCTCAGCCAGGGCCGGGACCCGCGGCTGTGCCTGTGGGACC
TGGCAGAGGGCAGGAACACCGTCATGGACTCAGTTCAGCTGGACAGTGTGGGCTTCTGCAAGAG
TTCCATCTTGGTCAGGGGACAGCTCTGCTGGATGCTTGCTGTGCCAGGGAAGGGCAGCGACGAG
ACTAACTCCAGTCTCCGCCCCCTCCTTCTGGCTGGCTATGAGGATGGATCGGTAACCCTGTGGG
ACGTCTCAGAGCGGAAGGTGTGCAGCCAAATCACCTGCCATGAAGAGCCTGTCATGGGCCTTGA
CTTCGACTCTCAGAAGGCCAAGGGCGTCTCAGGCTCGGCCGGGAAGGTACTGGCTGTCTGGAGT
CTGGACGATCAGCAGTCCCTGCAGGTGAAGAAGACCCATGAGCTCATCAATCCTGGAATTGCCG
AGGTCACCCTCCGTCCAGATCACAGGCTCTTCGCCACAGCAGGCTGGGACCACCGCATCCGTGT
GTTTCACTGGAGGACAATTAAGCCACTGGCTGTCCTGGCTTTCCACAGCGCTCCTGTGCACTGC
GTGGCCTTTGCCGCTGATGGTTTGCTTGCTGCAGGGTCCAAGGACCAGCGAATCAGCGTCTGGT
CACTCTACCCTTGCCCATGACTTAGCTGTGGGGCACTGCTGTCTTACTCCAGTCTTGACCCAGC
ACAGTGGAAGCTCTTCAGATCCCTCCAAGGACAACAAACTGTGGCCAAAGGTCTGTGAGATCCA
CTTTCTCTGTGAGGGTCCCTGTTCCTTTTGTGACTGTCATTCAGATGATAGACCCCTGGCACCT
ATCCCTTGGTAACAGGCATAGCTTACACCTGGTAGGACCAGACTAAAGATATTTGACAATAAAT
TTCCCATTGCCTACCTGAAGCCTTAAGGTGGGAACTTTCCACGAAGACATCCCTGTGCTCTCCC
CTCAGAGTCAGAGCATTCAGATTGTCCGCTGACCAGCCTTCCTTGTGAGCTGTAGTTCTGGGTG
CAGGTTCTCAGTGCTTGTCCTTGGGAGGCTGTCAGTTCCACAGTCTGCTACACCTCTGGCACAT
TGCCCCAGACATGTTCAGAGACTCTTGACATCCAGGGCTGAGGTCAGCATGAGGAACGGATAAA
ACTGGGCTCCCTAAAGAGGGAGGCAGAAAAGAGTTAATAATGGGGTGACCAAGGTGGTCAGGGA
AGGAGAACTTACAGAACACAGTATAAGGCCAAATAGAAGACCAGGAAAGGAGGCTCTAGCCCCT
GATAGGATAAGGTAAAGGGATAGCCTGTCTCCTAGTGAACCTGTGGGTAGCAAGGGAAAGTGCC
CATGACAGGCCACAAGCCAGCCCCTCTGTAGTGCCCAGGGCACAAGCACAGCCATGTGGTGTAT
GGAGTAACAAGGCCTTGAGAGTCAGGAGTGAGCATAGCATATGGCTGACAGGTGAGCAGCCTCC
GAGGTAGTGTTGACTGGGGGCTGGGGGTGGGGTTCCGTATAGGTGAGGAGGATGCAGCTAAGGA
GTGTAGACCTCCGACCTTTCTCCTCCCATCATTGCCAGAAAGAATCCTGTGCCCCAAAGTCCTG
GCATGCCCCCAAGCGCTGCCCTGCCAGGCACTGCTGACCTTAGAATCCCAGCTGCCCTTTGGCC
TCCAGTCTGTAGCTAAACACTCCACATAGCCTGCTGAGGCTGATGTGGCTGTTAAAAGTGTCAC
ACTACCACACTTCAGCCTGGTGTCCCCAAGCTGGGGAGCACACGTGGGAGGCCAGGAAAGGAGT
GTGTGGTGCAGGTGAAGTGCTATCCGTGGCAGGGCCCAAGGAAGCTAGTTGGATTGGAGGTAAG
TTAGTTAGACACAGTCCAAAAGGTGAGAAGCCAGGCAGGAGGAGGAATCCAGGGGTGGGAAGAT
GGGAATGTGGCTGGTTATGGGTGGGTCAGGAGGATGTGCCTTCGCCCCATACTGAGAGGCAGTT
GCCAGGGGGAGCCCAGAATCCTCAGAGGGCTTCCTGTTTGCTCCTCTCTGCACACCTGTGAAGG
ATATAACCTGGTGGTAAGCTCATGCACACAGGAGGTCCTGGCTCCCGCTAAGGCCCTGGGACAT
TACCATAACAGCACAGCCTCCAGCTTGGACTCTCTAAATGGAGTGGTGATCATTAGCTGCCACG
TGGTGGGAACGCTCGGAACAGGCTATGAATTGGGAGCCACCCTCAGCAGAACCTGACCGGTGGA
GCTCTGTAACAGGCTGGCTTTCCTGGAGTCTCTAGAAATGGCATGGACCAACTTAGTCTACATG
GGCAGAAGCATGTAGACCTAGTGAGCAGGCTGACCCAGGTCATAGGCATAGTCTTCTTCACTCC
CTTTGAAGGAAGTACCAGCCAGATACTGCTCATCCTTCTCCCAGACTCCCTCAGGGGGCCTGCC
ACCTATCTTATTACCCTGGGGTGGGGGTGGAGGGCATGGGTAGGTTGGTTGCAGGGAAATCGGT
GAGTCCATCTATGAGTGGGAAAGATAACCCAGTTCTTGTCTGTTCCCAAACCCTGCTGTGATAC
CCAGGCAGCACAGAGCAATGCTGCCCTGTGGAATGCTCCAGTTGTCTTTTACCAGTGCTTTTGG
AGATGACCTCAAGCCTGTATAGATCAATATGGCTGCTTCAGAAAGCCTCATCTCACACAAGTTC
TGCCAAATCTTACCCACCCCTTCACTGGGAGGTGGTCACCAGTGCGCACCTGTCCATAGGTTTT
CTCGGCTACTCCTGTACATGAATGGTGTGTAGCCATTTCCTCCAAAGCGGAGCAGCCTTTCCTC
CCTCAAAGGGAGGAGGCTTATAAGACTCAGTTCTGAGGCTCTCAGGGCCCTTGCCCAGAGTTAC
AAAGGCAGTAGCAATTGCTGGGGAGAGAACACTCCCCAGTGGACTTCCTGTAAGCTAGGCCAGG
AGCTCCAGGGAAACAGCTTCTGTAAGAGATCCCCAGGACTAGCCTGGGTGATCTCAGCTCCCTT
GGAGCCACCTATGCTCCCTAAAGTTACCCCAATAAAGTCATTGGTTCACGAAA

hide sequence

RefSeq Acc Id:

XM_017598200 ⟹ XP_017453689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	95,936,961 - 95,963,252 (-)	NCBI
mRatBN7.2	11	82,432,627 - 82,458,918 (-)	NCBI
Rnor_6.0	11	86,575,229 - 86,601,482 (-)	NCBI

Sequence:

show sequence

CAAGAAGAATAGTTGCCACTCTAAACGGCCACGGGGGCCAGGGTGTAACCTGGCTGAAGACACT
GCCGCAGGGACAGCAGCTCCTCAGATAGTCTCTGCAACAGGCTGGCAGAGATATATTTTCACTC
TCCTGGAGGTCTTCATTGGAGTCACATTGGCCAGGCTTCACCCATTTGGCCAGGCTCCTGGGCC
ATAGAGAAGCCTATGCTAAGACATGGATGGACATCCCAACCTGTCTCCAGAACTTACTGCTGCT
TCACTTAGATCCACAGTTTCTCTGGACTGTGCTGCTGATGTGGGACTCAGGCAAAGCCTGCCTT
CTGTTCTTCTGCTGCATATTCAACCCTGTGGACACCAGTATCCAAGGCCACAGACAGGAAGAAA
ATGCTAGCAGCTGCATCCAGGGCCGGGACCCGCGGCTGTGCCTGTGGGACCTGGCAGAGGGCAG
GAACACCGTCATGGACTCAGTTCAGCTGGACAGTGTGGGCTTCTGCAAGAGTTCCATCTTGGTC
AGGGGACAGCTCTGCTGGATGCTTGCTGTGCCAGGGAAGGGCAGCGACGAGGTTCAGATTCTGG
AGATGCCATCCAAGACGTCAGTGTGCACCCTGAAGCCGGAGGCAGATGCCAAGCCAGGCATGCC
CATGTGCCTGGGGCTGTGGCAGACTAACTCCAGTCTCCGCCCCCTCCTTCTGGCTGGCTATGAG
GATGGATCGGTAACCCTGTGGGACGTCTCAGAGCGGAAGGTGTGCAGCCAAATCACCTGCCATG
AAGAGCCTGTCATGGGCCTTGACTTCGACTCTCAGAAGGCCAAGGGCGTCTCAGGCTCGGCCGG
GAAGGTACTGGCTGTCTGGAGTCTGGACGATCAGCAGTCCCTGCAGGTGAAGAAGACCCATGAG
CTCATCAATCCTGGAATTGCCGAGGTCACCCTCCGTCCAGATCACAGGCTCTTCGCCACAGCAG
GCTGGGACCACCGCATCCGTGTGTTTCACTGGAGGACAATTAAGCCACTGGCTGTCCTGGCTTT
CCACAGCGCTCCTGTGCACTGCGTGGCCTTTGCCGCTGATGGTTTGCTTGCTGCAGGGTCCAAG
GACCAGCGAATCAGCGTCTGGTCACTCTACCCTTGCCCATGACTTAGCTGTGGGGCACTGCTGT
CTTACTCCAGTCTTGACCCAGCACAGTGGAAGCTCTTCAGATCCCTCCAAGGACAACAAACTGT
GGCCAAAGGTCTGTGAGATCCACTTTCTCTGTGAGGGTCCCTGTTCCTTTTGTGACTGTCATTC
AGATGATAGACCCCTGGCACCTATCCCTTGGTAACAGGCATAGCTTACACCTGGTAGGACCAGA
CTAAAGATATTTGACAATAAATTTCCCATTGCCTACCTGAAGCCTTAAGGTGGGAACTTTCCAC
GAAGACATCCCTGTGCTCTCCCCTCAGAGTCAGAGCATTCAGATTGTCCGCTGACCAGCCTTCC
TTGTGAGCTGTAGTTCTGGGTGCAGGTTCTCAGTGCTTGTCCTTGGGAGGCTGTCAGTTCCACA
GTCTGCTACACCTCTGGCACATTGCCCCAGACATGTTCAGAGACTCTTGACATCCAGGGCTGAG
GTCAGCATGAGGAACGGATAAAACTGGGCTCCCTAAAGAGGGAGGCAGAAAAGAGTTAATAATG
GGGTGACCAAGGTGGTCAGGGAAGGAGAACTTACAGAACACAGTATAAGGCCAAATAGAAGACC
AGGAAAGGAGGCTCTAGCCCCTGATAGGATAAGGTAAAGGGATAGCCTGTCTCCTAGTGAACCT
GTGGGTAGCAAGGGAAAGTGCCCATGACAGGCCACAAGCCAGCCCCTCTGTAGTGCCCAGGGCA
CAAGCACAGCCATGTGGTGTATGGAGTAACAAGGCCTTGAGAGTCAGGAGTGAGCATAGCATAT
GGCTGACAGGTGAGCAGCCTCCGAGGTAGTGTTGACTGGGGGCTGGGGGTGGGGTTCCGTATAG
GTGAGGAGGATGCAGCTAAGGAGTGTAGACCTCCGACCTTTCTCCTCCCATCATTGCCAGAAAG
AATCCTGTGCCCCAAAGTCCTGGCATGCCCCCAAGCGCTGCCCTGCCAGGCACTGCTGACCTTA
GAATCCCAGCTGCCCTTTGGCCTCCAGTCTGTAGCTAAACACTCCACATAGCCTGCTGAGGCTG
ATGTGGCTGTTAAAAGTGTCACACTACCACACTTCAGCCTGGTGTCCCCAAGCTGGGGAGCACA
CGTGGGAGGCCAGGAAAGGAGTGTGTGGTGCAGGTGAAGTGCTATCCGTGGCAGGGCCCAAGGA
AGCTAGTTGGATTGGAGGTAAGTTAGTTAGACACAGTCCAAAAGGTGAGAAGCCAGGCAGGAGG
AGGAATCCAGGGGTGGGAAGATGGGAATGTGGCTGGTTATGGGTGGGTCAGGAGGATGTGCCTT
CGCCCCATACTGAGAGGCAGTTGCCAGGGGGAGCCCAGAATCCTCAGAGGGCTTCCTGTTTGCT
CCTCTCTGCACACCTGTGAAGGATATAACCTGGTGGTAAGCTCATGCACACAGGAGGTCCTGGC
TCCCGCTAAGGCCCTGGGACATTACCATAACAGCACAGCCTCCAGCTTGGACTCTCTAAATGGA
GTGGTGATCATTAGCTGCCACGTGGTGGGAACGCTCGGAACAGGCTATGAATTGGGAGCCACCC
TCAGCAGAACCTGACCGGTGGAGCTCTGTAACAGGCTGGCTTTCCTGGAGTCTCTAGAAATGGC
ATGGACCAACTTAGTCTACATGGGCAGAAGCATGTAGACCTAGTGAGCAGGCTGACCCAGGTCA
TAGGCATAGTCTTCTTCACTCCCTTTGAAGGAAGTACCAGCCAGATACTGCTCATCCTTCTCCC
AGACTCCCTCAGGGGGCCTGCCACCTATCTTATTACCCTGGGGTGGGGGTGGAGGGCATGGGTA
GGTTGGTTGCAGGGAAATCGGTGAGTCCATCTATGAGTGGGAAAGATAACCCAGTTCTTGTCTG
TTCCCAAACCCTGCTGTGATACCCAGGCAGCACAGAGCAATGCTGCCCTGTGGAATGCTCCAGT
TGTCTTTTACCAGTGCTTTTGGAGATGACCTCAAGCCTGTATAGATCAATATGGCTGCTTCAGA
AAGCCTCATCTCACACAAGTTCTGCCAAATCTTACCCACCCCTTCACTGGGAGGTGGTCACCAG
TGCGCACCTGTCCATAGGTTTTCTCGGCTACTCCTGTACATGAATGGTGTGTAGCCATTTCCTC
CAAAGCGGAGCAGCCTTTCCTCCCTCAAAGGGAGGAGGCTTATAAGACTCAGTTCTGAGGCTCT
CAGGGCCCTTGCCCAGAGTTACAAAGGCAGTAGCAATTGCTGGGGAGAGAACACTCCCCAGTGG
ACTTCCTGTAAGCTAGGCCAGGAGCTCCAGGGAAACAGCTTCTGTAAGAGATCCCCAGGACTAG
CCTGGGTGATCTCAGCTCCCTTGGAGCCACCTATGCTCCCTAAAGTTACCCCAATAAAGTCATT
GGTTCACGAAA

hide sequence

RefSeq Acc Id:

XM_039088981 ⟹ XP_038944909

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	95,936,961 - 95,996,525 (-)	NCBI
mRatBN7.2	11	82,432,627 - 82,490,569 (-)	NCBI

RefSeq Acc Id:

XM_039088982 ⟹ XP_038944910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	95,936,961 - 95,961,756 (-)	NCBI
mRatBN7.2	11	82,432,627 - 82,457,422 (-)	NCBI

RefSeq Acc Id:

XR_005491494

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	95,933,994 - 96,011,931 (-)	NCBI
mRatBN7.2	11	82,425,301 - 82,507,833 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001385806	(Get FASTA)	NCBI Sequence Viewer
	XP_006248716	(Get FASTA)	NCBI Sequence Viewer
	XP_017453689	(Get FASTA)	NCBI Sequence Viewer
	XP_038944909	(Get FASTA)	NCBI Sequence Viewer
	XP_038944910	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000064268
	ENSRNOP00000064268.2
	ENSRNOP00000102738
	ENSRNOP00000102738.1

RefSeq Acc Id:

XP_006248716 ⟸ XM_006248654

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAAPFPPPPSPRFVLRGTQSAVNTLHFCPAPGAAENPLLFSGSQNGLVHIWSLQTRRIVATLNG
HGGQGVTWLKTLPQGQQLLSQGRDPRLCLWDLAEGRNTVMDSVQLDSVGFCKSSILVRGQLCWM
LAVPGKGSDETNSSLRPLLLAGYEDGSVTLWDVSERKVCSQITCHEEPVMGLDFDSQKAKGVSG
SAGKVLAVWSLDDQQSLQVKKTHELINPGIAEVTLRPDHRLFATAGWDHRIRVFHWRTIKPLAV
LAFHSAPVHCVAFAADGLLAAGSKDQRISVWSLYPCP

hide sequence

RefSeq Acc Id:

XP_017453689 ⟸ XM_017598200

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDIPTCLQNLLLLHLDPQFLWTVLLMWDSGKACLLFFCCIFNPVDTSIQGHRQEENASSCIQGR
DPRLCLWDLAEGRNTVMDSVQLDSVGFCKSSILVRGQLCWMLAVPGKGSDEVQILEMPSKTSVC
TLKPEADAKPGMPMCLGLWQTNSSLRPLLLAGYEDGSVTLWDVSERKVCSQITCHEEPVMGLDF
DSQKAKGVSGSAGKVLAVWSLDDQQSLQVKKTHELINPGIAEVTLRPDHRLFATAGWDHRIRVF
HWRTIKPLAVLAFHSAPVHCVAFAADGLLAAGSKDQRISVWSLYPCP

hide sequence

Ensembl Acc Id:

ENSRNOP00000002596 ⟸ ENSRNOT00000002596

Ensembl Acc Id:

ENSRNOP00000064268 ⟸ ENSRNOT00000073377

RefSeq Acc Id:	XP_038944909 ⟸ XM_039088981
- Peptide Label:	isoform X1
- UniProtKB:	M0R4I1 (UniProtKB/TrEMBL), D4A2F0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944910 ⟸ XM_039088982
- Peptide Label:	isoform X4

RefSeq Acc Id:	NP_001385806 ⟸ NM_001398877
- UniProtKB:	M0R4I1 (UniProtKB/TrEMBL), D4A2F0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102738 ⟸ ENSRNOT00000141470

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A2F0-F1-model_v2	AlphaFold	D4A2F0	1-326	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698305

Promoter ID:

EPDNEW_R8826

Type:

multiple initiation site

Name:

Gnb1l_1

Description:

G protein subunit beta 1 like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	86,655,583 - 86,655,643	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1594165	AgrOrtholog
BioCyc Gene	G2FUF-20664	BioCyc
Ensembl Genes	ENSRNOG00000001891	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000073377	ENTREZGENE
	ENSRNOT00000073377.4	UniProtKB/TrEMBL
	ENSRNOT00000141470	ENTREZGENE
	ENSRNOT00000141470.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	680266	ENTREZGENE
PANTHER	GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN 1	UniProtKB/TrEMBL
	TRANSDUCIN BETA-LIKE 3	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PhenoGen	Gnb1l	PhenoGen
PROSITE	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001891	RatGTEx
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	WD40_like	UniProtKB/TrEMBL
UniProt	A0ABK0LDJ6_RAT	UniProtKB/TrEMBL
	D4A2F0	ENTREZGENE, UniProtKB/TrEMBL
	M0R4I1	ENTREZGENE
UniProt Secondary	M0R4I1	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-15	Gnb1l	G protein subunit beta 1 like	Gnb1l	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-07-08	Gnb1l	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	LOC682392	similar to Guanine nucleotide-binding protein beta subunit-like protein 1 (G protein beta subunit-like protein 1) (WD40 repeat-containing protein deleted in VCFS) (WDVCF protein)	Data merged from RGD:1584558	1643240	APPROVED
2008-03-05	Gnb1l	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	LOC680266	similar to Guanine nucleotide-binding protein beta subunit-like protein 1 (G protein beta subunit-like protein 1) (WD40 repeat-containing protein deleted in VCFS) (WDVCF protein)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC680266	similar to Guanine nucleotide-binding protein beta subunit-like protein 1 (G protein beta subunit-like protein 1) (WD40 repeat-containing protein deleted in VCFS) (WDVCF protein)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC682392	similar to Guanine nucleotide-binding protein beta subunit-like protein 1 (G protein beta subunit-like protein 1) (WD40 repeat-containing protein deleted in VCFS) (WDVCF protein)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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