Traf3ip2 (Traf3 interacting protein 2) - Rat Genome Database

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Gene: Traf3ip2 (Traf3 interacting protein 2) Rattus norvegicus
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Symbol: Traf3ip2
Name: Traf3 interacting protein 2
RGD ID: 1593240
Description: Predicted to enable signaling receptor binding activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; hematopoietic or lymphoid organ development; and lymphocyte differentiation. Predicted to act upstream of or within B cell apoptotic process. Predicted to be active in cytoplasmic vesicle and nucleus. Human ortholog(s) of this gene implicated in chronic mucocutaneous candidiasis and psoriasis 13. Orthologous to human TRAF3IP2 (TRAF3 interacting protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: adapter protein CIKS; chromosome 6 open reading frame 4; E3 ubiquitin ligase TRAF3IP2; LOC294437; MGC112844; RGD1304768; similar to Adapter protein CIKS (Connection to IKK and SAPK/JNK) (Nuclear factor NF-kappa-B activator 1) (ACT1)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82044,565,992 - 44,609,240 (+)NCBIGRCr8
mRatBN7.22043,011,405 - 43,054,654 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2043,011,450 - 43,054,667 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2044,760,488 - 44,803,525 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02044,419,713 - 44,462,750 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02045,161,986 - 45,205,098 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02044,679,861 - 44,722,874 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2044,680,449 - 44,722,872 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02046,401,898 - 46,445,446 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42043,747,622 - 43,792,255 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2043,727,541 - 43,769,944 (+)NCBICelera
Cytogenetic Map20q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
B cell affinity maturation  (ISO)
B cell apoptotic process  (ISO)
B cell homeostasis  (ISO)
B cell mediated immunity  (ISO)
CD40 signaling pathway  (ISO)
cellular response to cytokine stimulus  (ISO)
cellular response to interleukin-17  (ISO)
cytokine-mediated signaling pathway  (ISO)
eosinophil homeostasis  (ISO)
eosinophil mediated immunity  (ISO)
establishment of T cell polarity  (ISO)
gene expression  (ISO)
heart development  (ISO)
humoral immune response  (IBA,ISO)
immune response  (ISO)
inflammatory response  (ISO)
interleukin-17-mediated signaling pathway  (ISO)
interleukin-17A-mediated signaling pathway  (ISO)
kidney development  (ISO)
leukocyte activation involved in inflammatory response  (ISO)
lymph node development  (ISO)
mRNA stabilization  (ISO)
mucus secretion  (ISO)
neutrophil activation  (ISO)
positive regulation of canonical NF-kappaB signal transduction  (IBA,ISO)
positive regulation of defense response to virus by host  (ISO)
protein import into nucleus  (ISO)
protein K63-linked ubiquitination  (ISO)
protein localization to nucleus  (ISO)
protein localization to P-body  (ISO)
protein polyubiquitination  (ISO)
protein ubiquitination  (ISO)
response to cytokine  (ISO)
response to xenobiotic stimulus  (ISO)
signal transduction involved in regulation of gene expression  (ISO)
skin development  (ISO)
spleen development  (ISO)
T cell activation  (ISO)
T cell differentiation  (ISO)
T-helper 17 type immune response  (ISO)
transitional two stage B cell differentiation  (ISO)
tumor necrosis factor-mediated signaling pathway  (ISO)
type 2 immune response  (ISO)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12761501   PMID:15485634   PMID:20554964   PMID:23066157  


Genomics

Comparative Map Data
Traf3ip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82044,565,992 - 44,609,240 (+)NCBIGRCr8
mRatBN7.22043,011,405 - 43,054,654 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2043,011,450 - 43,054,667 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2044,760,488 - 44,803,525 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02044,419,713 - 44,462,750 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02045,161,986 - 45,205,098 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02044,679,861 - 44,722,874 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2044,680,449 - 44,722,872 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02046,401,898 - 46,445,446 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42043,747,622 - 43,792,255 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2043,727,541 - 43,769,944 (+)NCBICelera
Cytogenetic Map20q12NCBI
TRAF3IP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386111,555,381 - 111,605,878 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6111,555,381 - 111,606,906 (-)EnsemblGRCh38hg38GRCh38
GRCh376111,876,584 - 111,927,081 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366111,986,836 - 112,034,014 (-)NCBINCBI36Build 36hg18NCBI36
Build 346111,986,835 - 112,034,014NCBI
Celera6112,626,739 - 112,674,049 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6109,448,986 - 109,500,061 (-)NCBIHuRef
CHM1_16112,139,458 - 112,190,300 (-)NCBICHM1_1
T2T-CHM13v2.06112,738,381 - 112,788,887 (-)NCBIT2T-CHM13v2.0
Traf3ip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391039,488,930 - 39,531,303 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1039,488,930 - 39,531,303 (+)EnsemblGRCm39 Ensembl
GRCm381039,612,934 - 39,655,307 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1039,612,934 - 39,655,307 (+)EnsemblGRCm38mm10GRCm38
MGSCv371039,332,740 - 39,375,113 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361039,302,350 - 39,344,723 (+)NCBIMGSCv36mm8
Celera1040,498,927 - 40,541,335 (+)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1020.86NCBI
Traf3ip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541136,326,926 - 36,363,288 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541136,328,152 - 36,363,614 (-)NCBIChiLan1.0ChiLan1.0
TRAF3IP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25131,572,937 - 131,620,512 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16129,458,898 - 129,506,170 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06109,367,333 - 109,414,601 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16113,443,540 - 113,490,402 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6113,444,005 - 113,485,533 (-)Ensemblpanpan1.1panPan2
TRAF3IP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11268,029,861 - 68,070,901 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1268,030,197 - 68,058,518 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1267,849,673 - 67,891,354 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01268,911,754 - 68,953,406 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1268,911,760 - 68,952,954 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11268,263,251 - 68,304,918 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01268,109,790 - 68,151,470 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01268,435,643 - 68,477,316 (-)NCBIUU_Cfam_GSD_1.0
Traf3ip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946103,076,436 - 103,116,386 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936679316,277 - 336,557 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936679308,508 - 348,561 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAF3IP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl177,487,577 - 77,541,198 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1177,483,997 - 77,541,557 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,044,462 - 87,102,274 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRAF3IP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11362,272,893 - 62,320,096 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1362,285,589 - 62,324,312 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604034,579,431 - 34,626,946 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Traf3ip2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624933506,254 - 554,015 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624933507,879 - 558,357 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Traf3ip2
196 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:37
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000000728
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat

Markers in Region
RH131445  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22043,010,570 - 43,010,776 (+)MAPPERmRatBN7.2
Rnor_6.02044,679,570 - 44,679,775NCBIRnor6.0
Rnor_5.02046,401,019 - 46,401,224UniSTSRnor5.0
RGSC_v3.42043,746,743 - 43,746,948UniSTSRGSC3.4
Celera2043,726,662 - 43,726,867UniSTS
Cytogenetic Map20q12UniSTS
BF410372  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22043,016,682 - 43,016,884 (+)MAPPERmRatBN7.2
Rnor_6.02044,685,702 - 44,685,903NCBIRnor6.0
Rnor_5.02046,407,176 - 46,407,377UniSTSRnor5.0
RGSC_v3.42043,752,900 - 43,753,101UniSTSRGSC3.4
Celera2043,732,755 - 43,732,956UniSTS
RH 3.4 Map20465.01UniSTS
Cytogenetic Map20q12UniSTS
RH137093  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22043,054,463 - 43,054,625 (+)MAPPERmRatBN7.2
Rnor_6.02044,722,684 - 44,722,845NCBIRnor6.0
Rnor_5.02046,445,256 - 46,445,417UniSTSRnor5.0
RGSC_v3.42043,792,065 - 43,792,226UniSTSRGSC3.4
Celera2043,769,754 - 43,769,915UniSTS
RH 3.4 Map20460.5UniSTS
Cytogenetic Map20q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000000728   ⟹   ENSRNOP00000000728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2043,011,450 - 43,051,794 (+)Ensembl
Rnor_6.0 Ensembl2044,680,449 - 44,722,872 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103797   ⟹   ENSRNOP00000081231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2043,011,450 - 43,054,667 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119731   ⟹   ENSRNOP00000095663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2043,011,450 - 43,054,657 (+)Ensembl
RefSeq Acc Id: NM_001044248   ⟹   NP_001037713
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82044,566,037 - 44,609,240 (+)NCBI
mRatBN7.22043,011,450 - 43,054,654 (+)NCBI
Rnor_6.02044,680,449 - 44,722,874 (+)NCBI
Rnor_5.02046,401,898 - 46,445,446 (+)NCBI
RGSC_v3.42043,747,622 - 43,792,255 (+)RGD
Celera2043,727,541 - 43,769,944 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256532   ⟹   XP_006256594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82044,569,341 - 44,609,240 (+)NCBI
mRatBN7.22043,013,075 - 43,054,379 (+)NCBI
Rnor_6.02044,681,874 - 44,722,874 (+)NCBI
Rnor_5.02046,401,898 - 46,445,446 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098886   ⟹   XP_038954814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82044,565,992 - 44,596,004 (+)NCBI
mRatBN7.22043,011,405 - 43,040,121 (+)NCBI
RefSeq Acc Id: XM_039098887   ⟹   XP_038954815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82044,600,611 - 44,609,240 (+)NCBI
mRatBN7.22043,045,707 - 43,054,654 (+)NCBI
RefSeq Acc Id: XM_063279316   ⟹   XP_063135386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82044,565,992 - 44,603,613 (+)NCBI
RefSeq Acc Id: XM_063279317   ⟹   XP_063135387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82044,584,547 - 44,609,240 (+)NCBI
RefSeq Acc Id: XM_063279318   ⟹   XP_063135388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82044,595,493 - 44,609,240 (+)NCBI
RefSeq Acc Id: NP_001037713   ⟸   NM_001044248
- UniProtKB: Q498R8 (UniProtKB/TrEMBL),   F7ENK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256594   ⟸   XM_006256532
- Peptide Label: isoform X1
- UniProtKB: Q498R8 (UniProtKB/TrEMBL),   F7ENK0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000728   ⟸   ENSRNOT00000000728
RefSeq Acc Id: XP_038954814   ⟸   XM_039098886
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038954815   ⟸   XM_039098887
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000081231   ⟸   ENSRNOT00000103797
Ensembl Acc Id: ENSRNOP00000095663   ⟸   ENSRNOT00000119731
RefSeq Acc Id: XP_063135386   ⟸   XM_063279316
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GLR0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135387   ⟸   XM_063279317
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063135388   ⟸   XM_063279318
- Peptide Label: isoform X5
- UniProtKB: A6KIH0 (UniProtKB/TrEMBL)
Protein Domains
SEFIR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q498R8-F1-model_v2 AlphaFold Q498R8 1-558 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701651
Promoter ID:EPDNEW_R12175
Type:initiation region
Name:Traf3ip2_1
Description:Traf3 interacting protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02044,680,439 - 44,680,499EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593240 AgrOrtholog
BioCyc Gene G2FUF-3470 BioCyc
Ensembl Genes ENSRNOG00000000595 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000728.6 UniProtKB/TrEMBL
  ENSRNOT00000103797.1 UniProtKB/TrEMBL
  ENSRNOT00000119731.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7376204 IMAGE-MGC_LOAD
InterPro E3_ubiq_ligase_TRAF3IP2 UniProtKB/TrEMBL
  SEFIR UniProtKB/TrEMBL
KEGG Report rno:361857 UniProtKB/TrEMBL
MGC_CLONE MGC:112844 IMAGE-MGC_LOAD
NCBI Gene 361857 ENTREZGENE
PANTHER ADAPTER PROTEIN CIKS UniProtKB/TrEMBL
  E3 UBIQUITIN LIGASE TRAF3IP2 UniProtKB/TrEMBL
Pfam SEFIR UniProtKB/TrEMBL
PhenoGen Traf3ip2 PhenoGen
PROSITE SEFIR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000595 RatGTEx
UniProt A0A8I5ZS21_RAT UniProtKB/TrEMBL
  A0A8I6GLR0 ENTREZGENE, UniProtKB/TrEMBL
  A6KIH0 ENTREZGENE, UniProtKB/TrEMBL
  F7ENK0 ENTREZGENE, UniProtKB/TrEMBL
  Q498R8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-15 Traf3ip2  Traf3 interacting protein 2  RGD1304768  similar to Adapter protein CIKS (Connection to IKK and SAPK/JNK) (Nuclear factor NF-kappa-B activator 1) (ACT1)   Data merged from RGD:1304768 1643240 APPROVED
2008-04-30 RGD1304768  similar to Adapter protein CIKS (Connection to IKK and SAPK/JNK) (Nuclear factor NF-kappa-B activator 1) (ACT1)   RGD1304768_predicted  similar to Adapter protein CIKS (Connection to IKK and SAPK/JNK) (Nuclear factor NF-kappa-B activator 1) (ACT1) (predicted)  'predicted' is removed 2292626 APPROVED
2008-03-06 Traf3ip2  Traf3 interacting protein 2  MGC112844  chromosome 6 open reading frame 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 MGC112844  chromosome 6 open reading frame 4      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1304768_predicted  similar to Adapter protein CIKS (Connection to IKK and SAPK/JNK) (Nuclear factor NF-kappa-B activator 1) (ACT1) (predicted)  LOC294437_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294437_predicted  similar to Adapter protein CIKS (Connection to IKK and SAPK/JNK) (Nuclear factor NF-kappa-B activator 1) (ACT1) (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL