H2ac12 (H2A clustered histone 12) - Rat Genome Database

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Gene: H2ac12 (H2A clustered histone 12) Rattus norvegicus
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Symbol: H2ac12
Name: H2A clustered histone 12
RGD ID: 1593006
Description: Predicted to be a structural constituent of chromatin. Predicted to be involved in heterochromatin formation. Predicted to be located in chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H2AC12 (H2A clustered histone 12); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); aminoglutethimide (ortholog); arsane (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: histone H2A type 1-H; LOC680322; similar to Histone H2A type 1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,182,193 - 47,182,658 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21742,486,415 - 42,486,880 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1742,486,415 - 42,486,941 (+)EnsemblmRatBN7.2
Rnor_6.01744,527,990 - 44,528,557 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1744,528,125 - 44,528,511 (+)Ensemblrn6Rnor6.0
Rnor_5.01758,940,554 - 58,942,457 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41750,119,480 - 50,119,866 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1753,974,759 - 53,975,326 (-)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
nucleoplasm  (ISO)
nucleosome  (IBA,IEA)
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
H2ac12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,182,193 - 47,182,658 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21742,486,415 - 42,486,880 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1742,486,415 - 42,486,941 (+)EnsemblmRatBN7.2
Rnor_6.01744,527,990 - 44,528,557 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1744,528,125 - 44,528,511 (+)Ensemblrn6Rnor6.0
Rnor_5.01758,940,554 - 58,942,457 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41750,119,480 - 50,119,866 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1753,974,759 - 53,975,326 (-)NCBICelera
Cytogenetic Map17p11NCBI
H2AC12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38627,147,106 - 27,147,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl627,147,106 - 27,147,562 (+)Ensemblhg38GRCh38
GRCh37627,114,885 - 27,115,341 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36627,222,887 - 27,223,373 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34627,222,886 - 27,223,325NCBI
Celera628,720,909 - 28,721,395 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef626,922,924 - 26,923,404 (+)NCBIHuRef
CHM1_1627,117,174 - 27,117,654 (+)NCBICHM1_1
T2T-CHM13v2.0627,015,922 - 27,016,378 (+)NCBIT2T-CHM13v2.0
H2ac12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391322,219,292 - 22,219,813 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1322,219,334 - 22,219,738 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381322,035,122 - 22,035,643 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1322,035,164 - 22,035,568 (-)Ensemblmm10GRCm38
MGSCv371322,127,035 - 22,127,421 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361322,042,631 - 22,043,017 (-)NCBIMGSCv36mm8
Celera1322,307,610 - 22,307,996 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map138.14NCBI
LOC100982497
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2541,779,821 - 41,795,629 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1637,781,292 - 37,797,102 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0626,980,174 - 26,981,215 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1627,642,074 - 27,642,553 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl627,642,115 - 27,642,501 (+)EnsemblpanPan2panpan1.1
H2AC12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13524,558,456 - 24,559,356 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3524,558,493 - 24,558,879 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3524,414,716 - 24,415,520 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
H2AC17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl721,632,862 - 21,936,037 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1721,632,867 - 21,633,939 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2723,188,135 - 23,188,608 (-)NCBISscrofa10.2Sscrofa10.2susScr3
H2AC12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11745,362,328 - 45,362,820 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604426,842,068 - 26,842,554 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in H2ac12
2 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)173803135483031354Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172266079955604694Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172149899450592236Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)173803135483031354Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)173544694975762341Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)173803135483031354Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173803135483031354Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)174605012691050126Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)174265489587654895Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173604553781045537Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174238816487388164Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)173310464578104645Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173219953449497050Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173219953455604694Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)173310464578104645Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)174238816487388164Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)173768787782687877Rat

Markers in Region
RH129544  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21742,484,566 - 42,484,785 (+)MAPPERmRatBN7.2
Rnor_6.01744,526,242 - 44,526,460NCBIRnor6.0
Rnor_5.01758,944,098 - 58,944,316UniSTSRnor5.0
RGSC_v3.41750,117,597 - 50,117,815UniSTSRGSC3.4
Celera1753,976,856 - 53,977,074UniSTS
Cytogenetic Map17q11UniSTS
RH129874  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21742,484,582 - 42,484,785 (+)MAPPERmRatBN7.2
Rnor_6.01744,526,258 - 44,526,460NCBIRnor6.0
Rnor_5.01758,944,098 - 58,944,300UniSTSRnor5.0
RGSC_v3.41750,117,613 - 50,117,815UniSTSRGSC3.4
Celera1753,976,856 - 53,977,058UniSTS
Cytogenetic Map17q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 5 59 130 73 70 42 59 42 6 271 147 11 109 63 58 28 9 9

Sequence


Ensembl Acc Id: ENSRNOT00000084538   ⟹   ENSRNOP00000073895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1744,528,125 - 44,528,511 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112865   ⟹   ENSRNOP00000086720
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1742,486,415 - 42,486,941 (+)Ensembl
RefSeq Acc Id: NM_001408726   ⟹   NP_001395655
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,182,193 - 47,182,658 (+)NCBI
mRatBN7.21742,486,415 - 42,486,880 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001395655 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL84583 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000073895   ⟸   ENSRNOT00000084538
Ensembl Acc Id: ENSRNOP00000086720   ⟸   ENSRNOT00000112865
RefSeq Acc Id: NP_001395655   ⟸   NM_001408726
- UniProtKB: Q64598 (UniProtKB/Swiss-Prot),   M0RDM4 (UniProtKB/TrEMBL),   A6KNB5 (UniProtKB/TrEMBL)
Protein Domains
Histone H2A C-terminal   Histone H2A/H2B/H3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RDM4-F1-model_v2 AlphaFold M0RDM4 1-128 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593006 AgrOrtholog
BioCyc Gene G2FUF-9294 BioCyc
Ensembl Genes ENSRNOG00000052845 Ensembl
  ENSRNOG00000066420 Ensembl
Gene3D-CATH Histone, subunit A UniProtKB/Swiss-Prot
InterPro Histone-fold UniProtKB/Swiss-Prot
  Histone_H2A UniProtKB/Swiss-Prot
  Histone_H2A/H2B/H3 UniProtKB/Swiss-Prot
  Histone_H2A_C UniProtKB/Swiss-Prot
  Histone_H2A_CS UniProtKB/Swiss-Prot
NCBI Gene 680322 ENTREZGENE
PANTHER HISTONE H2A UniProtKB/Swiss-Prot
Pfam Histone UniProtKB/Swiss-Prot
  Histone_H2A_C UniProtKB/Swiss-Prot
PhenoGen H2ac12 PhenoGen
PRINTS HISTONEH2A UniProtKB/Swiss-Prot
PROSITE HISTONE_H2A UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000052845 RatGTEx
  ENSRNOG00000066420 RatGTEx
SMART H2A UniProtKB/Swiss-Prot
Superfamily-SCOP Histone-fold UniProtKB/Swiss-Prot
UniProt A6KNB5 ENTREZGENE, UniProtKB/TrEMBL
  H2A1F_RAT UniProtKB/Swiss-Prot
  M0RDM4 ENTREZGENE, UniProtKB/TrEMBL
  Q64598 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 H2ac12  H2A clustered histone 12  H2ac12  H2A clustered histone 12  Data merged from RGD:149736389 737654 PROVISIONAL
2021-08-09 H2ac12  H2A clustered histone 12      Symbol and Name status set to provisional 45752 PROVISIONAL
2020-08-13 H2ac12  H2A clustered histone 12  LOC680322  similar to Histone H2A type 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC680322  similar to Histone H2A type 1      Symbol and Name status set to provisional 70820 PROVISIONAL