Med12l (mediator complex subunit 12L) - Rat Genome Database

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Pathways
Gene: Med12l (mediator complex subunit 12L) Rattus norvegicus
Analyze
Symbol: Med12l
Name: mediator complex subunit 12L
RGD ID: 1592212
Description: Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED12L (mediator complex subunit 12L); PARTICIPATES IN RNA polymerase II transcription pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC295070; mediator complex subunit 12-like; no opposite paired repeat protein; RGD1304617; similar to mediator of RNA polymerase II transcription, subunit 12 homolog (S. cerevisiae)-like; similar to TRALPUSH
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82145,403,318 - 145,726,317 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2145,404,375 - 145,723,516 (+)EnsemblGRCr8
mRatBN7.22143,253,048 - 143,576,507 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2143,252,139 - 143,573,741 (+)EnsemblmRatBN7.2
Rnor_6.02149,213,134 - 149,316,569 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2149,213,134 - 149,532,292 (+)Ensemblrn6Rnor6.0
Rnor_5.02168,632,572 - 168,735,461 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42148,369,072 - 148,486,667 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2137,680,776 - 137,783,201 (+)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mediator complex  (IBA,IEA)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The Mediator complex and transcription regulation. Poss ZC, etal., Crit Rev Biochem Mol Biol. 2013 Nov-Dec;48(6):575-608. doi: 10.3109/10409238.2013.840259. Epub 2013 Oct 3.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:15632090   PMID:23575864  


Genomics

Comparative Map Data
Med12l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82145,403,318 - 145,726,317 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2145,404,375 - 145,723,516 (+)EnsemblGRCr8
mRatBN7.22143,253,048 - 143,576,507 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2143,252,139 - 143,573,741 (+)EnsemblmRatBN7.2
Rnor_6.02149,213,134 - 149,316,569 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2149,213,134 - 149,532,292 (+)Ensemblrn6Rnor6.0
Rnor_5.02168,632,572 - 168,735,461 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42148,369,072 - 148,486,667 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2137,680,776 - 137,783,201 (+)NCBICelera
Cytogenetic Map2q26NCBI
MED12L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383151,085,664 - 151,436,653 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3151,085,286 - 151,437,072 (+)Ensemblhg38GRCh38
GRCh373150,803,451 - 151,154,441 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363152,287,366 - 152,634,500 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343152,287,373 - 152,634,508NCBI
Celera3149,217,541 - 149,572,796 (+)NCBICelera
Cytogenetic Map3q25.1NCBI
HuRef3148,177,702 - 148,533,825 (+)NCBIHuRef
CHM1_13150,767,889 - 151,117,598 (+)NCBICHM1_1
T2T-CHM13v2.03153,836,722 - 154,193,673 (+)NCBIT2T-CHM13v2.0
Med12l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39358,912,820 - 59,225,867 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl358,913,246 - 59,226,103 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38359,005,419 - 59,318,446 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl359,005,825 - 59,318,682 (+)Ensemblmm10GRCm38
MGSCv37358,810,900 - 59,122,338 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36359,134,607 - 59,197,157 (+)NCBIMGSCv36mm8
Celera358,694,087 - 59,005,681 (+)NCBICelera
Cytogenetic Map3DNCBI
cM Map328.89NCBI
Med12l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554482,224,179 - 2,530,293 (+)Ensembl
ChiLan1.0NW_0049554482,224,343 - 2,530,542 (+)NCBIChiLan1.0ChiLan1.0
MED12L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22148,985,515 - 149,334,653 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13148,990,254 - 149,339,380 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03148,115,501 - 148,463,846 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13155,685,087 - 156,033,925 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3155,686,214 - 156,031,094 (+)EnsemblpanPan2panpan1.1
MED12L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12345,701,890 - 45,987,504 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2345,708,417 - 45,987,175 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2345,543,869 - 45,863,573 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02346,305,656 - 46,625,826 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2346,305,590 - 46,626,339 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12345,895,376 - 46,214,680 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02345,947,340 - 46,266,671 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02346,223,859 - 46,543,814 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Med12l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560290,107,530 - 90,383,205 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367581,385,854 - 1,656,608 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367581,384,616 - 1,656,621 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MED12L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1391,271,539 - 91,625,855 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11391,271,588 - 91,625,867 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21399,614,491 - 99,697,324 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MED12L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11539,265,167 - 39,606,163 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1539,268,991 - 39,605,326 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604112,080,007 - 12,424,392 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Med12l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473028,548,421 - 28,858,782 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473028,548,450 - 28,862,632 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Med12l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1395,587,717 - 95,908,512 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Med12l
2336 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:583
Count of miRNA genes:276
Interacting mature miRNAs:358
Transcripts:ENSRNOT00000014470
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)2105628029150628029Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2124103798154505346Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143565208188565208Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2139067258192287892Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2120039407159440891Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2100807373145807373Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2106869825151869825Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2120039407151869825Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)293602631145807373Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2139067258184067258Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
7488933Bp368Blood pressure QTL 3680.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2104957381149957381Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2120339555165339555Rat
9685068Swd7Spike wave discharge measurement QTL 73.20.01brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge rate (CMO:0001739)2143806628149738646Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
1581552Pur12Proteinuria QTL 125.190.0009urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2114032149150226270Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)2114440891159440891Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
1354594Despr10Despair related QTL 102e-06locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2116804572161804572Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat

Markers in Region
BI276286  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22143,252,273 - 143,252,372 (+)MAPPERmRatBN7.2
Rnor_6.02149,211,651 - 149,211,749NCBIRnor6.0
Rnor_5.02168,631,089 - 168,631,187UniSTSRnor5.0
RGSC_v3.42148,367,929 - 148,368,027UniSTSRGSC3.4
Celera2137,679,596 - 137,679,694UniSTS
RH 3.4 Map2879.9UniSTS
Cytogenetic Map2q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000014470   ⟹   ENSRNOP00000014471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2145,404,375 - 145,723,516 (+)Ensembl
mRatBN7.2 Ensembl2143,252,139 - 143,523,279 (+)Ensembl
Rnor_6.0 Ensembl2149,213,134 - 149,316,569 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000074764   ⟹   ENSRNOP00000065340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2149,494,330 - 149,532,089 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077334   ⟹   ENSRNOP00000071071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2149,475,744 - 149,494,311 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082464   ⟹   ENSRNOP00000073514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2145,404,375 - 145,723,516 (+)Ensembl
mRatBN7.2 Ensembl2143,252,139 - 143,573,741 (+)Ensembl
Rnor_6.0 Ensembl2149,315,189 - 149,494,296 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2149,494,318 - 149,532,292 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083504   ⟹   ENSRNOP00000068819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2145,404,375 - 145,723,516 (+)Ensembl
mRatBN7.2 Ensembl2143,252,139 - 143,373,368 (+)Ensembl
Rnor_6.0 Ensembl2149,213,135 - 149,315,205 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084020   ⟹   ENSRNOP00000069370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2145,404,375 - 145,723,516 (+)Ensembl
mRatBN7.2 Ensembl2143,252,139 - 143,573,741 (+)Ensembl
Rnor_6.0 Ensembl2149,214,265 - 149,494,296 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089865   ⟹   ENSRNOP00000068784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2149,494,330 - 149,532,292 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2149,214,026 - 149,333,880 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117288   ⟹   ENSRNOP00000095906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2143,535,204 - 143,573,741 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148788   ⟹   ENSRNOP00000100400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2145,404,375 - 145,723,516 (+)Ensembl
RefSeq Acc Id: XM_039103686   ⟹   XP_038959614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82145,403,318 - 145,726,317 (+)NCBI
mRatBN7.22143,253,415 - 143,576,507 (+)NCBI
RefSeq Acc Id: XM_039103688   ⟹   XP_038959616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82145,403,318 - 145,726,317 (+)NCBI
mRatBN7.22143,253,415 - 143,576,507 (+)NCBI
RefSeq Acc Id: XM_039103689   ⟹   XP_038959617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82145,403,318 - 145,726,317 (+)NCBI
mRatBN7.22143,253,415 - 143,576,507 (+)NCBI
RefSeq Acc Id: XM_039103690   ⟹   XP_038959618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82145,403,318 - 145,726,317 (+)NCBI
mRatBN7.22143,253,415 - 143,576,507 (+)NCBI
RefSeq Acc Id: XM_039103691   ⟹   XP_038959619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82145,403,318 - 145,726,317 (+)NCBI
mRatBN7.22143,253,415 - 143,576,507 (+)NCBI
RefSeq Acc Id: XM_039103692   ⟹   XP_038959620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82145,403,318 - 145,726,317 (+)NCBI
mRatBN7.22143,253,415 - 143,576,507 (+)NCBI
RefSeq Acc Id: XM_039103693   ⟹   XP_038959621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82145,403,318 - 145,726,317 (+)NCBI
mRatBN7.22143,253,415 - 143,576,507 (+)NCBI
RefSeq Acc Id: XM_039103694   ⟹   XP_038959622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82145,403,318 - 145,726,317 (+)NCBI
mRatBN7.22143,253,415 - 143,576,507 (+)NCBI
RefSeq Acc Id: XM_039103696   ⟹   XP_038959624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82145,643,504 - 145,726,317 (+)NCBI
mRatBN7.22143,495,730 - 143,576,507 (+)NCBI
RefSeq Acc Id: XM_063282897   ⟹   XP_063138967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82145,643,504 - 145,726,317 (+)NCBI
RefSeq Acc Id: XR_005500979
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82145,403,318 - 145,672,139 (+)NCBI
mRatBN7.22143,253,254 - 143,522,329 (+)NCBI
Ensembl Acc Id: ENSRNOP00000073514   ⟸   ENSRNOT00000082464
Ensembl Acc Id: ENSRNOP00000071071   ⟸   ENSRNOT00000077334
Ensembl Acc Id: ENSRNOP00000014471   ⟸   ENSRNOT00000014470
Ensembl Acc Id: ENSRNOP00000068784   ⟸   ENSRNOT00000089865
Ensembl Acc Id: ENSRNOP00000068819   ⟸   ENSRNOT00000083504
Ensembl Acc Id: ENSRNOP00000069370   ⟸   ENSRNOT00000084020
Ensembl Acc Id: ENSRNOP00000065340   ⟸   ENSRNOT00000074764
RefSeq Acc Id: XP_038959614   ⟸   XM_039103686
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038959621   ⟸   XM_039103693
- Peptide Label: isoform X7
- UniProtKB: A0A0G2JV69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959622   ⟸   XM_039103694
- Peptide Label: isoform X8
- UniProtKB: A0A0G2JV69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959617   ⟸   XM_039103689
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038959616   ⟸   XM_039103688
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038959619   ⟸   XM_039103691
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K5Q3 (UniProtKB/TrEMBL),   A0A0G2JV69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959618   ⟸   XM_039103690
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038959620   ⟸   XM_039103692
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JV69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959624   ⟸   XM_039103696
- Peptide Label: isoform X9
- UniProtKB: A6JVK6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000095906   ⟸   ENSRNOT00000117288
RefSeq Acc Id: XP_063138967   ⟸   XM_063282897
- Peptide Label: isoform X9
- UniProtKB: A6JVK6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000100400   ⟸   ENSRNOT00000148788
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABQ3-F1-model_v2 AlphaFold D4ABQ3 1-774 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1592212 AgrOrtholog
BioCyc Gene G2FUF-52992 BioCyc
Ensembl Genes ENSRNOG00000010680 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014470 ENTREZGENE
  ENSRNOT00000014470.9 UniProtKB/TrEMBL
  ENSRNOT00000082464 ENTREZGENE
  ENSRNOT00000082464.3 UniProtKB/TrEMBL
  ENSRNOT00000083504 ENTREZGENE
  ENSRNOT00000083504.3 UniProtKB/TrEMBL
  ENSRNOT00000084020 ENTREZGENE
  ENSRNOT00000084020.3 UniProtKB/TrEMBL
  ENSRNOT00000148788 ENTREZGENE
  ENSRNOT00000148788.1 UniProtKB/TrEMBL
InterPro Med12-LCEWAV UniProtKB/TrEMBL
  Mediator_comp_sub12 UniProtKB/TrEMBL
  Mediator_Med12 UniProtKB/TrEMBL
  Mediator_Med12_catenin-bd UniProtKB/TrEMBL
NCBI Gene 690752 ENTREZGENE
PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12 UniProtKB/TrEMBL
  MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12-LIKE PROTEIN UniProtKB/TrEMBL
Pfam Med12 UniProtKB/TrEMBL
  Med12-LCEWAV UniProtKB/TrEMBL
  Med12-PQL UniProtKB/TrEMBL
PhenoGen Med12l PhenoGen
RatGTEx ENSRNOG00000010680 RatGTEx
SMART Med12 UniProtKB/TrEMBL
UniProt A0A0G2JTS1_RAT UniProtKB/TrEMBL
  A0A0G2JV69 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K5Q3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LFY8_RAT UniProtKB/TrEMBL
  A6JVK6 ENTREZGENE, UniProtKB/TrEMBL
  D4ABQ3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-13 Med12l  mediator complex subunit 12L  Med12l  mediator complex subunit 12-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-06-15 LOC690752  similar to mediator of RNA polymerase II transcription, subunit 12 homolog (S. cerevisiae)-like  RGD1304617  similar to TRALPUSH; no opposite paired repeat protein   Data merged from RGD:1304617 1643240 APPROVED
2008-04-30 RGD1304617  similar to TRALPUSH; no opposite paired repeat protein   RGD1304617_predicted  similar to TRALPUSH; no opposite paired repeat protein (predicted)  'predicted' is removed 2292626 APPROVED
2008-01-09 LOC690752  similar to mediator of RNA polymerase II transcription, subunit 12 homolog (S. cerevisiae)-like  LOC682481  similar to mediator of RNA polymerase II transcription, subunit 12 homolog (S. cerevisiae)-like  Data merged from RGD:1583411 1643240 APPROVED
2006-11-20 LOC690752  similar to mediator of RNA polymerase II transcription, subunit 12 homolog (S. cerevisiae)-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682481  similar to mediator of RNA polymerase II transcription, subunit 12 homolog (S. cerevisiae)-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1304617_predicted  similar to TRALPUSH; no opposite paired repeat protein (predicted)  LOC295070_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC295070_predicted  similar to TRALPUSH; no opposite paired repeat protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL