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Gene: Tafa2 (TAFA chemokine like family member 2) Rattus norvegicus

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Symbol:

Tafa2

Name:

TAFA chemokine like family member 2

RGD ID:

1589429

Description:

Predicted to be involved in memory and visual learning. Predicted to be located in cytoplasm and nucleus. Orthologous to human TAFA2 (TAFA chemokine like family member 2); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-Tetrachlorodibenzofuran; atrazine.

Type:

protein-coding

RefSeq Status:

INFERRED

Previously known as:

chemokine-like protein TAFA-2; Fam19a2; family with sequence similarity 19 (chemokine (C-C motif)-like), member A2; family with sequence similarity 19 member A2, C-C motif chemokine like; hypothetical protein LOC678999; LOC680647; similar to TAFA2 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

Fam19a2^{Tn(sb-T2/Bart3)2.184Mcwi}

Genetic Models:

F344-Fam19a2^{Tn(sb-T2/Bart3)2.184Mcwi}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	60,827,985 - 61,303,873 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	60,891,958 - 61,303,869 (+)	Ensembl				GRCr8
mRatBN7.2	7	58,942,598 - 59,418,640 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	58,942,610 - 59,417,299 (+)	Ensembl				mRatBN7.2
Rnor_6.0	7	66,017,066 - 66,496,690 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	66,017,086 - 66,172,360 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	66,221,368 - 66,695,803 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	63,388,665 - 63,566,226 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	56,114,065 - 56,588,451 (+)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

anxiety disorder (ISO)

Cognitive Dysfunction (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1-naphthyl isothiocyanate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

belinostat (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cholesterol (ISO)

clothianidin (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

entinostat (ISO)

epoxiconazole (ISO)

indometacin (ISO)

inulin (ISO)

mercury dibromide (ISO)

methotrexate (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

progesterone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

trametinib (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

memory (IEA,ISO)

visual learning (IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

nucleus (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:30137205

Genomics

Comparative Map Data

Tafa2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	60,827,985 - 61,303,873 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	60,891,958 - 61,303,869 (+)	Ensembl				GRCr8
mRatBN7.2	7	58,942,598 - 59,418,640 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	58,942,610 - 59,417,299 (+)	Ensembl				mRatBN7.2
Rnor_6.0	7	66,017,066 - 66,496,690 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	66,017,086 - 66,172,360 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	66,221,368 - 66,695,803 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	63,388,665 - 63,566,226 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	56,114,065 - 56,588,451 (+)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

TAFA2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	61,708,273 - 62,260,034 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	61,707,341 - 62,279,150 (-)	Ensembl			hg38	GRCh38
GRCh37	12	62,102,054 - 62,586,554 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	60,388,307 - 60,872,818 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	60,388,309 - 60,872,818	NCBI
Celera	12	61,771,461 - 62,255,544 (-)	NCBI		Celera
Cytogenetic Map	12	q14.1	NCBI
HuRef	12	59,153,030 - 59,637,513 (-)	NCBI		HuRef
CHM1_1	12	62,069,825 - 62,554,522 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	61,687,128 - 62,238,817 (-)	NCBI		T2T-CHM13v2.0

Tafa2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	123,099,813 - 123,577,109 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	123,099,901 - 123,577,109 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	123,264,024 - 123,741,204 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	123,263,996 - 123,741,204 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	122,701,132 - 123,178,035 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	122,667,136 - 123,144,039 (+)	NCBI		MGSCv36	mm8
Celera	10	125,646,982 - 126,120,933 (+)	NCBI		Celera
Cytogenetic Map	10	D2	NCBI
cM Map	10	72.31	NCBI

Tafa2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955458	8,935,792 - 9,351,358 (-)	NCBI	ChiLan1.0	ChiLan1.0

TAFA2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	32,090,348 - 32,637,163 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	32,087,212 - 32,633,940 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	26,683,045 - 27,229,772 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	26,954,142 - 27,501,208 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	27,225,154 - 27,502,300 (+)	Ensembl			panPan2	panpan1.1

TAFA2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	4,998,538 - 5,134,970 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	4,999,695 - 5,233,553 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	5,029,406 - 5,395,616 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	5,024,533 - 5,480,189 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	5,024,537 - 5,161,178 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	4,978,740 - 5,421,639 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	5,221,674 - 5,670,753 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	5,361,721 - 5,810,250 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tafa2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	53,173,603 - 53,593,123 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936545	517,005 - 701,058 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936545	517,910 - 936,630 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TAFA2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	26,391,996 - 26,557,852 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	26,391,969 - 26,893,517 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	28,995,477 - 29,036,460 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TAFA2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	57,598,179 - 58,095,527 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	57,597,697 - 57,763,149 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	187,714,293 - 188,247,361 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tafa2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624802	6,104,788 - 6,275,915 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624802	5,682,672 - 6,275,081 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tafa2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	201,710,981 - 202,175,250 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tafa2
3457 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	117
Count of miRNA genes:	102
Interacting mature miRNAs:	111
Transcripts:	ENSRNOT00000005537
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	23807606	68807606	Rat
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	45113903	90113903	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	26638057	71638057	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	51700643	96700643	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
10059605	Kidm47	Kidney mass QTL 47	2.91	0.05	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	49137999	67614020	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
1298525	Cm1	Cardiac mass QTL 1	2.7		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	7	56625161	101625161	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	39845902	84845902	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	32998702	77998702	Rat
2317059	Aia15	Adjuvant induced arthritis QTL 15	2.46		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	49682832	63890004	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	55498584	105834451	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	36178764	81178764	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	48475049	93475049	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	36178764	81178764	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	28624575	65788017	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	17460447	62460447	Rat
61435	Cia4	Collagen induced arthritis QTL 4	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	59998661	63890004	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
2303582	Gluco53	Glucose level QTL 53	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	7	48603087	93603087	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	20057232	65057232	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat

Markers in Region

D7Rat166

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	59,225,947 - 59,226,115 (-)	MAPPER	mRatBN7.2
Rnor_6.0	7	66,210,469 - 66,210,636	NCBI	Rnor6.0
Rnor_5.0	7	66,411,716 - 66,411,883	UniSTS	Rnor5.0
RGSC_v3.4	7	63,349,606 - 63,349,774	RGD	RGSC3.4
RGSC_v3.4	7	63,349,607 - 63,349,774	UniSTS	RGSC3.4
Celera	7	56,396,145 - 56,396,312	UniSTS
RGSC_v3.1	7	63,370,210 - 63,370,585	RGD
FHH x ACI Map	7	33.38	RGD
FHH x ACI Map	7	33.38	UniSTS
Cytogenetic Map	7	q22	UniSTS

D7Rat57

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	59,201,069 - 59,201,286 (-)	MAPPER	mRatBN7.2
Rnor_6.0	7	66,237,933 - 66,238,149	NCBI	Rnor6.0
Rnor_5.0	7	66,438,174 - 66,438,390	UniSTS	Rnor5.0
RGSC_v3.4	7	63,324,498 - 63,324,715	RGD	RGSC3.4
RGSC_v3.4	7	63,324,499 - 63,324,715	UniSTS	RGSC3.4
Celera	7	56,371,462 - 56,371,674	UniSTS
RGSC_v3.1	7	63,345,228 - 63,345,445	RGD
FHH x ACI Map	7	33.38	RGD
FHH x ACI Map	7	33.38	UniSTS
Cytogenetic Map	7	q22	UniSTS

D4Mit353

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	24,160,427 - 24,160,495 (+)	MAPPER	mRatBN7.2
mRatBN7.2	7	59,001,403 - 59,001,471 (-)	MAPPER	mRatBN7.2
Rnor_6.0	7	66,437,812 - 66,437,879	NCBI	Rnor6.0
Rnor_6.0	14	26,098,556 - 26,098,623	NCBI	Rnor6.0
Rnor_5.0	14	25,927,493 - 25,927,560	UniSTS	Rnor5.0
Rnor_5.0	7	66,636,936 - 66,637,003	UniSTS	Rnor5.0
RGSC_v3.4	7	63,119,310 - 63,119,377	UniSTS	RGSC3.4
RGSC_v3.4	14	26,040,509 - 26,040,576	UniSTS	RGSC3.4
Celera	7	56,172,983 - 56,173,050	UniSTS
Celera	14	23,565,134 - 23,565,201	UniSTS
Celera	6	79,726,093 - 79,726,163	UniSTS
Cytogenetic Map	7	q22	UniSTS

AI501937

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	59,418,141 - 59,418,356 (-)	MAPPER	mRatBN7.2
Rnor_6.0	7	66,017,236 - 66,017,450	NCBI	Rnor6.0
Rnor_5.0	7	66,221,525 - 66,221,739	UniSTS	Rnor5.0
RGSC_v3.4	7	63,552,887 - 63,553,101	UniSTS	RGSC3.4
Celera	7	56,588,067 - 56,588,281	UniSTS
Cytogenetic Map	7	q22	UniSTS

Genetic Models

This gene Tafa2 is modified in the following models/strains:

F344-Fam19a2^{Tn(sb-T2/Bart3)2.184Mcwi}

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	10	64	135	77	81	55	27	55	6	245	109	3	127	64	86	26	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001432033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005537 ⟹ ENSRNOP00000005537

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	66,017,086 - 66,172,360 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103382 ⟹ ENSRNOP00000082192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	60,891,958 - 61,303,869 (+)	Ensembl
mRatBN7.2 Ensembl	7	58,942,610 - 59,417,299 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106467 ⟹ ENSRNOP00000091953

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	61,015,290 - 61,303,869 (+)	Ensembl
mRatBN7.2 Ensembl	7	58,942,610 - 59,417,299 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000124340 ⟹ ENSRNOP00000099007

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	61,150,368 - 61,293,004 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153209 ⟹ ENSRNOP00000102701

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	61,150,368 - 61,267,262 (+)	Ensembl

RefSeq Acc Id:

XM_017595215 ⟹ XP_017450704

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,827,989 - 61,303,873 (+)	NCBI
mRatBN7.2	7	59,151,840 - 59,418,640 (+)	NCBI
Rnor_6.0	7	66,017,066 - 66,496,690 (-)	NCBI

Sequence:

show sequence

TGCAGGGAAGGTGGTTTGCTCTCAGCATCTGCAGCCACTGCTGACAGAATTGGGAGGGAGACGG
AGGGAGTCAGAGCCTCCCGGTCCAGCCATCCCATTTTACTGCTCAACTCAGCCTGGAGTGTCAG
AACCCATCTCTGCCAGCCTTCTCTGTGTTTTGTACAGTGGGGCCAGTCGCTCCCAAAGGCCAGC
CAGCTGAGTAGAACGGGGGTCTAGGGTGGACCATCAGGGTTCTGCCCGTTGGGGGTGACTTTCT
AACATTATCTCGAGTGCATTTTAACAGTACAACGCTTGTGGTGGGACTCAGAGAGGGGAATGCT
TTGATTGCTTCTTTTTAAAATTTGGCTTCTTTTTCTTCTGGTGATCTGGATTTGTTTCCTCGGG
GCCCCTCCCCTTGTTCTGTTCTTTCTCACTCCCGCCTTTGGCGAAGTGACACAGGCGACACCTG
CTCGCTTGTGTCTGCAGTTGGAACTCGCACCTCCACGGTGGTGAAGGTGCCGGCGCGCTCGTGA
CTGGGGGACAGCAGAGGGTTCCCTCCCTTGGAGCACACGATGCCTAGAGTGGCGGCCGGTGGGC
TGCGAGAGGCTGGACCGGCTGCTCTTGAAGGCGAGATCAAGGGGCTGCAGCTGGCCAGGAGTTG
CTGCTAAGTGGACGCGACCCGACGGCGCCCAGGTGTCAGGGAGGGCACCCGTGGGACCCGAGTG
CGAGCTGCGGGGACGCAGGCTTCTCACGGGGAGGACATCGGCTGAGCGCACAGCCCGCGAGCCT
GCTCAGAACCTGTCCATACCGGAGCCTGCAGACCTAGGACAGCCGGGGAACTCGAGGAGTGCTC
GGCGGAGGCTGCTCTGCTGAAGGTGAATCACCGCGTCCAATTGCCTTTCCCTAGAGAACCCGGG
GGAGGGCAGGAGAGGGGGAACGTGTGAGCGCGCGTTTGTGTGCAAGGGAGAGACGACGCGGGGC
GAGAGGAAAAGTCCTCGCTCGCCGCTCAAAGCAAACAAATCGGAGATGGAATAAGAGCGGCGGT
TGCTGGAGCCCGCCTGGATCCTCGCAGTCGCGGGAGCCGAGCGCACCGCGCGCAGCGCATCGCC
GGGGACAGCGGGAGACCGCGGGCGCCGCCGGGGGTTTTGGGGACTTTGGCTCTCCCCCTCGGTC
AACAAACCTTCTGATTACTTTGACACTGTGGGATAAAGAGCAGAGCCTAGGGACCGGCCTCGCG
CGCTGCATCTTCCTTTGGCTTCGGGGAGGGAGGACCCTGTATGTGAAGACACTGCCGAGCCCCC
TTTAGCCTTCGGAGGAGGCGGAACTCACGCGCACGCAGGGCCACACTCGCTCGCCCTCCGCGAG
CACACACCGGTGGACTTCAGGTCCCTATGCCCCTGGATGGTGCCAGAGGACCGGCATCTCGGAA
GCGATGCAGGAGCGGTGAGGCTGGCGTTGGCCCGCGGAAGCTACAGGACCATCACTAGGTGCTG
CCGCCACCGGGACGCCCGGCTGCAGTTTGAGCTACTACTTACATGGTGGAACTGCAGGCAAAGC
CACTGCTTCATCACTAGGCCAAATGTGCTTCCGTGTCAGAAGACTAGATGTCCGTGGAGATGGC
ATAGACTTGCTCTGATGTTTAGAGGCCAGGAAACTGAAAAGGAATCACAAGGAAGAGAAGTCAA
GGAAAACCATGTTCCGAGGTCACTTCCTGTTACAAAAGAAGGATCTGATCAGTGATGATAGACT
CTCTTCAGCAGAGGAGAAGAGAGACCCCGAGAAAGGCAGGATGAATAAGAGATACTTACAGAAA
GCAACACAAGGGAAGCTTCTGATCATTATTTTTATAGTGACCTTGTGGGGGAAAGCTGTTTCCA
GCGCCAACCATCACAAAGCTCACCATGTTAGAACTGGGACTTGCGAGGTGGTGGCGCTGCACAG
ATGCTGTAATAAGAACAAGATAGAAGAACGGTCCCAAACGGTCAAGTGCTCCTGCTTCCCTGGG
CAGGTGGCAGGCACTACCCGAGCTGCCCCATCTTGTGTGGATGCATCCATAGTGGAACAAAAAT
GGTGGTGTCATATGCAGCCATGTCTGGAGGGAGAGGAATGTAAAGTCCTTCCAGATCGCAAAGG
ATGGAGCTGTTCCTCTGGAAACAAAGTAAAAACAACTAGGGTAACTCATTAACGACTCCTAAAT
CAAGTAATCCTCAAGGCTGGTTTCACGGAGACATCAGAATAGAAACTGGACTCCTACAGTGACC
TGGAAGATTTTTATAACTCTCCGAAGAGACATTTAAAACCCATTTCCAAGGAATTCTATGGCTT
GTCCTCTAATTCCTACTGAAACTAAGACTTTAAAGAAGTCTGAAGTGAACTTTGGGTGCTGAAG
ACTTCATCAGCTGTGAACTGTGCTTGGCTCATGATGTTTCTGAGGGAAGCGGAACTCTGCTCTC
ATGGAGCCGGGATAGGGTTGGTTTTCCGGGCTGACACCAGAGACTGTCACCTGTAAGATTTTCT
GGCTTCAGCTATGACTGCTCTTGTGTCTGAAGCTGTCTCCCAAGCACACTGTCCCGTCATGGAT
GTGCTCCTGGCTCCTTTGTTCCTTGTCTAATAGGACTGTGCACAGCTTTGAGGATGTTCCCTTT
GCAAACTCTTCCGGCATGGCATAGACAGAGACAATTTTATTGGTATTCTAACCTTGAAACCCTG
AAAGCCTACATGTTTTAACATCTTGCTTTTGCCTCTGTAAAAGGAATAGAAGTATTTATCCATT
GATAACGATAATCATTGGCAAATCACAGTGATCTGACTACATCCCTCATAAAAGAATGTGTAGG
CGAGCTGGCACATTTCCCCAAGGCTAACGCGGACTGCAGCTCTCTGACAGTTAAACAGATAGCA
GTTAGGACTGGGTTCCAATTCCCATTACACAGTATTCTGTGCCTCCAGTGCACCCTTCCTTCCA
GTTTTTTTTAAAGTGTATTTTCTTTTTTTTTATATTTCCTTTTACTTTCCTTCACAGAAATCAT
CAATGTACAGTCAACTTAGCAGGTAGCTTTTGATTTAAAAAAAATAAAATAAAACAGGCCAGGG
ATGCATGTGCTTCTCTAATTTCTCATCACTTACATTTCTTCTAGCATTTTCTTAAACTATTCTT
TCTGTCTCATTTTAATATCATCTCTTGCTCGATTCCAATGACTGCTTGAATGCTTATTATTTGT
TCAGTCTGTGGATAGAAAAAAAATCTGTTGATTTTCCTTGACCACAAAGGTCTAAATATGTGCT
TATGGTTGTTCTATTCAAACATTTCTTGGCCAGTATTTTGTCCATATTTTCACTTGTGATTTTA
GTTCTTCAGGAGTTTTCTTACAAATATTTAAAGGCCTTAAACGTTGATTTACCTTTTTCTAAGT
TATTACAGAATGTATAATTTTGTACGGCATTTATTTTGTTTCACTTGTGAAGCGGGGGAAGGGA
ACAGTGGTTATGGCCACCCTATAATAATAGTACAATGTAAACCTATAGTTTGAAGAAACATAAA
GGCAAGGGTTTTTTCCATGTCTTGTTTATTTTAACTTGATCAAAATGCTTCACAGATCATGCCA
TTAGGTGGTCCGTCATTTTAGTAAAAGAGTGAAGCTGTTTGGGACTTCTTGTATTTCTAGAACT
CATTGGCAAAGCCAGTTAACCTTGTGTTGGTTTCTAGGATGGAGGTTCACATATTCTAGAGACG
AACTTGTATCTGTTAGTCTGTAACGATACTCAAAAAGAGTCACACATTAACTAGAACCCTTTAG
TAGGAAGAAGAGCTAAAATTGTTAAAAAGTGTTAAAAATTAAATCGGAAAAACCACACTTTTAA
TACTGAGCAAAAGTCAACTGCCTCATGAATATGTGGAATGCAGCGATTCCCACCTCACTTTTAA
GTGCTTAAAACCTGTTGGGTGGTCCAAGTCTACACAGAGTCAAAATGAGAGGAGTAATGTTTGT
GCTGCACTTTCTCTGTCAAACGAAGCGAAGCACCACTACTTCCTCTGGTACAAAATGAAAAACT
ATCATTTGGGATATTAAGAATTTATCCTAGGTTTGTTTGAAATTATGAATCATGCTTCTCATTT
TGAAAACTATGTTATTTAAACCAACGCTGGAATTTCTGTATTATATACAAGTGTAATACATGTC
TATCGATAGAAAAAAATAAATGGAATTTCAAATATATGATCTAGAATATTCCCGGTAGATTAAT
GTTGTGACTATTCGGAAAAAAATAAATAAAATTGGAATATAAAGTGGACTCACTTTCACAAGTA
AAATTTGGAAAATCTG

hide sequence

RefSeq Acc Id:

XM_063264597 ⟹ XP_063120667

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,867,364 - 61,303,873 (+)	NCBI

RefSeq Acc Id:

XM_063264598 ⟹ XP_063120668

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,827,985 - 61,301,869 (+)	NCBI

RefSeq Acc Id:

XM_063264599 ⟹ XP_063120669

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,923,120 - 61,303,873 (+)	NCBI

RefSeq Acc Id:

XM_063264600 ⟹ XP_063120670

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,867,364 - 61,303,873 (+)	NCBI

RefSeq Acc Id:

XM_063264601 ⟹ XP_063120671

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	60,827,990 - 61,303,873 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418962	(Get FASTA)	NCBI Sequence Viewer
	XP_017450704	(Get FASTA)	NCBI Sequence Viewer
	XP_063120667	(Get FASTA)	NCBI Sequence Viewer
	XP_063120668	(Get FASTA)	NCBI Sequence Viewer
	XP_063120669	(Get FASTA)	NCBI Sequence Viewer
	XP_063120670	(Get FASTA)	NCBI Sequence Viewer
	XP_063120671	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000082192
	ENSRNOP00000082192.2
	ENSRNOP00000091953
	ENSRNOP00000091953.2
	ENSRNOP00000099007
	ENSRNOP00000099007.1
	ENSRNOP00000102701
	ENSRNOP00000102701.1

RefSeq Acc Id:	XP_017450704 ⟸ XM_017595215
- Peptide Label:	isoform X1
- UniProtKB:	A6HQP1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFRGHFLLQKKDLISDDRLSSAEEKRDPEKGRMNKRYLQKATQGKLLIIIFIVTLWGKAVSSAN HHKAHHVRTGTCEVVALHRCCNKNKIEERSQTVKCSCFPGQVAGTTRAAPSCVDASIVEQKWWC HMQPCLEGEECKVLPDRKGWSCSSGNKVKTTRVTH hide sequence

Ensembl Acc Id:

ENSRNOP00000005537 ⟸ ENSRNOT00000005537

Ensembl Acc Id:

ENSRNOP00000082192 ⟸ ENSRNOT00000103382

Ensembl Acc Id:

ENSRNOP00000091953 ⟸ ENSRNOT00000106467

RefSeq Acc Id:	XP_063120668 ⟸ XM_063264598
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063120671 ⟸ XM_063264601
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063120670 ⟸ XM_063264600
- Peptide Label:	isoform X3
- UniProtKB:	A6HQP1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120667 ⟸ XM_063264597
- Peptide Label:	isoform X1
- UniProtKB:	A6HQP1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120669 ⟸ XM_063264599
- Peptide Label:	isoform X3
- UniProtKB:	A6HQP1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102701 ⟸ ENSRNOT00000153209

Ensembl Acc Id:

ENSRNOP00000099007 ⟸ ENSRNOT00000124340

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LV54-F1-model_v2	AlphaFold	F1LV54	1-143	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1589429	AgrOrtholog
BioCyc Gene	G2FUF-33840	BioCyc
Ensembl Genes	ENSRNOG00000004180	Ensembl
	ENSRNOG00000064852	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000103382	ENTREZGENE
	ENSRNOT00000103382.2	UniProtKB/TrEMBL
	ENSRNOT00000106467	ENTREZGENE
	ENSRNOT00000106467.2	UniProtKB/TrEMBL
	ENSRNOT00000124340	ENTREZGENE
	ENSRNOT00000124340.1	UniProtKB/TrEMBL
	ENSRNOT00000153209	ENTREZGENE
	ENSRNOT00000153209.1	UniProtKB/TrEMBL
InterPro	Chemokine-like_TAFA	UniProtKB/TrEMBL
	TAFA_chemokine-like	UniProtKB/TrEMBL
NCBI Gene	680647	ENTREZGENE
PANTHER	CHEMOKINE-LIKE PROTEIN TAFA FAMILY MEMBER	UniProtKB/TrEMBL
	CHEMOKINE-LIKE PROTEIN TAFA-2	UniProtKB/TrEMBL
Pfam	TAFA	UniProtKB/TrEMBL
PhenoGen	Tafa2	PhenoGen
RatGTEx	ENSRNOG00000004180	RatGTEx
	ENSRNOG00000064852	RatGTEx
UniProt	A0A8I5ZTJ1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AGP0_RAT	UniProtKB/TrEMBL
	A0ABK0KWS9_RAT	UniProtKB/TrEMBL
	A0ABK0LMW1_RAT	UniProtKB/TrEMBL
	A6HQP1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-02	Tafa2	TAFA chemokine like family member 2	Tafa2	TAFA chemokine like family member 2	Data merged from RGD:149736476	737654	PROVISIONAL
2021-08-09	Tafa2	TAFA chemokine like family member 2			Symbol and Name status set to provisional	45752	PROVISIONAL
2013-05-24	Fam19a2	family with sequence similarity 19 (chemokine (C-C motif)-like), member A2	LOC678999	hypothetical protein LOC678999	Data merged from RGD:1594232	1643240	APPROVED
2008-03-05	Fam19a2	family with sequence similarity 19 (chemokine (C-C motif)-like), member A2	LOC680647	similar to TAFA2 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC678999	hypothetical protein LOC678999			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC680647	similar to TAFA2 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD