Srrm3 (serine/arginine repetitive matrix 3) - Rat Genome Database

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Gene: Srrm3 (serine/arginine repetitive matrix 3) Rattus norvegicus
Analyze
Symbol: Srrm3
Name: serine/arginine repetitive matrix 3
RGD ID: 1587868
Description: Predicted to enable mRNA binding activity. Predicted to be located in nucleus. Orthologous to human SRRM3 (serine/arginine repetitive matrix 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC685890; LOC685890; LOC685906; RGD1307391; serine/arginine repetitive matrix protein 3; similar to splicing coactivator subunit SRm300
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81226,445,718 - 26,515,185 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1226,445,718 - 26,515,124 (-)EnsemblGRCr8
mRatBN7.21220,808,878 - 20,878,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1220,809,089 - 20,878,505 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1221,950,502 - 22,020,439 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,562,898 - 22,632,853 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,629,399 - 21,699,325 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01223,855,400 - 23,925,793 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,855,400 - 23,925,741 (-)Ensemblrn6Rnor6.0
Rnor_5.01225,853,016 - 25,923,187 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41221,927,594 - 22,005,675 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1222,572,450 - 22,641,548 (-)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function
mRNA binding  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Srrm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81226,445,718 - 26,515,185 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1226,445,718 - 26,515,124 (-)EnsemblGRCr8
mRatBN7.21220,808,878 - 20,878,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1220,809,089 - 20,878,505 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1221,950,502 - 22,020,439 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,562,898 - 22,632,853 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,629,399 - 21,699,325 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01223,855,400 - 23,925,793 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1223,855,400 - 23,925,741 (-)Ensemblrn6Rnor6.0
Rnor_5.01225,853,016 - 25,923,187 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41221,927,594 - 22,005,675 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1222,572,450 - 22,641,548 (-)NCBICelera
Cytogenetic Map12q12NCBI
SRRM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38776,201,896 - 76,287,287 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl776,201,896 - 76,287,288 (+)Ensemblhg38GRCh38
GRCh37775,831,214 - 75,916,604 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36775,752,311 - 75,754,554 (+)NCBIBuild 36Build 36hg18NCBI36
Celera770,699,693 - 70,785,104 (+)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef770,917,643 - 71,002,839 (+)NCBIHuRef
CHM1_1775,761,269 - 75,846,725 (+)NCBICHM1_1
T2T-CHM13v2.0777,489,369 - 77,574,760 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2775,164,280 - 75,249,669 (+)NCBI
Srrm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,835,693 - 135,903,627 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5135,835,744 - 135,903,626 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385135,806,860 - 135,874,773 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,806,890 - 135,874,772 (+)Ensemblmm10GRCm38
MGSCv375136,293,976 - 136,350,642 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365136,091,517 - 136,126,595 (+)NCBIMGSCv36mm8
Celera5132,825,431 - 132,882,977 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map575.42NCBI
Srrm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545614,855,077 - 14,914,315 (+)Ensembl
ChiLan1.0NW_00495545614,855,387 - 14,914,315 (+)NCBIChiLan1.0ChiLan1.0
SRRM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2693,666,193 - 93,751,179 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17141,930,831 - 142,015,817 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0767,732,909 - 67,818,031 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1782,653,155 - 82,736,257 (+)NCBIPanPan1.1PanPan1.1panPan2
SRRM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.167,426,779 - 7,481,780 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl67,426,560 - 7,471,140 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha69,142,662 - 9,177,350 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.067,267,515 - 7,302,227 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl67,267,507 - 7,300,923 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.167,236,580 - 7,271,268 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.067,199,580 - 7,234,250 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.067,363,019 - 7,397,715 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Srrm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344131,862,759 - 131,915,515 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365432,121,141 - 2,173,837 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365432,121,052 - 2,169,982 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRRM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,046,538 - 10,102,124 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1310,046,538 - 10,102,149 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.239,998,451 - 10,030,087 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRRM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12810,336,615 - 10,424,545 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2810,364,092 - 10,422,922 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660705,994,074 - 6,076,806 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srrm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474014,873,396 - 14,929,008 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474014,873,340 - 14,929,023 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Srrm3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11618,149,174 - 18,189,841 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Srrm3
555 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:57
Interacting mature miRNAs:61
Transcripts:ENSRNOT00000001957
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121874946936488809Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121874946934312613Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
11530002Bss119Bone structure and strength QTL 11916.394e-17lumbar vertebra area (VT:0010570)lumbar vertebra area (CMO:0001688)122651003826983303Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat

Markers in Region
D12Got103  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81226,511,132 - 26,511,383 (+)Marker Load Pipeline
mRatBN7.21220,874,513 - 20,874,764 (+)MAPPERmRatBN7.2
Rnor_6.01223,921,751 - 23,922,001NCBIRnor6.0
Rnor_5.01225,919,159 - 25,919,409UniSTSRnor5.0
RGSC_v3.41222,001,690 - 22,001,940UniSTSRGSC3.4
Celera1222,637,556 - 22,637,806UniSTS
RH 3.4 Map12303.12UniSTS
RH 3.4 Map12303.12RGD
RH 2.0 Map12243.7RGD
Cytogenetic Map12q12UniSTS
BF386509  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,825,712 - 20,825,862 (+)MAPPERmRatBN7.2
Rnor_6.01223,872,604 - 23,872,753NCBIRnor6.0
Rnor_5.01225,870,220 - 25,870,369UniSTSRnor5.0
RGSC_v3.41221,943,026 - 21,943,175UniSTSRGSC3.4
Celera1222,589,060 - 22,589,209UniSTS
Cytogenetic Map12q12UniSTS
BF389756  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,816,452 - 20,816,670 (+)MAPPERmRatBN7.2
Rnor_6.01223,862,761 - 23,862,978NCBIRnor6.0
Rnor_5.01225,860,377 - 25,860,594UniSTSRnor5.0
RGSC_v3.41221,933,764 - 21,933,981UniSTSRGSC3.4
Celera1222,579,809 - 22,580,026UniSTS
RH 3.4 Map12299.8UniSTS
Cytogenetic Map12q12UniSTS
RH139287  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,845,140 - 20,845,363 (+)MAPPERmRatBN7.2
Rnor_6.01223,891,842 - 23,892,064NCBIRnor6.0
Rnor_5.01225,888,908 - 25,889,130UniSTSRnor5.0
RGSC_v3.41221,962,168 - 21,962,390UniSTSRGSC3.4
Celera1222,608,085 - 22,608,307UniSTS
RH 3.4 Map12298.9UniSTS
Cytogenetic Map12q12UniSTS
BE101960  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21220,819,339 - 20,819,515 (+)MAPPERmRatBN7.2
Rnor_6.01223,865,648 - 23,865,823NCBIRnor6.0
Rnor_5.01225,863,264 - 25,863,439UniSTSRnor5.0
RGSC_v3.41221,936,651 - 21,936,826UniSTSRGSC3.4
Celera1222,582,696 - 22,582,871UniSTS
RH 3.4 Map12299.8UniSTS
Cytogenetic Map12q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 12 63 151 56 55 24 31 24 6 237 126 9 126 67 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001957   ⟹   ENSRNOP00000001957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1226,445,718 - 26,515,124 (-)Ensembl
mRatBN7.2 Ensembl1220,809,094 - 20,878,505 (-)Ensembl
Rnor_6.0 Ensembl1223,855,400 - 23,925,741 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097877   ⟹   ENSRNOP00000088438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1226,445,718 - 26,515,124 (-)Ensembl
mRatBN7.2 Ensembl1220,809,089 - 20,878,505 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115141   ⟹   ENSRNOP00000090867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1220,809,094 - 20,878,505 (-)Ensembl
RefSeq Acc Id: NM_001277394   ⟹   NP_001264323
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,445,718 - 26,515,124 (-)NCBI
mRatBN7.21220,809,094 - 20,878,505 (-)NCBI
Rnor_6.01223,855,400 - 23,925,741 (-)NCBI
Rnor_5.01225,853,016 - 25,923,187 (-)NCBI
Celera1222,572,450 - 22,641,548 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089750   ⟹   XP_038945678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,445,718 - 26,515,181 (-)NCBI
mRatBN7.21220,808,878 - 20,878,556 (-)NCBI
RefSeq Acc Id: XM_039089752   ⟹   XP_038945680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,452,409 - 26,515,185 (-)NCBI
mRatBN7.21220,815,510 - 20,878,557 (-)NCBI
RefSeq Acc Id: XM_039089753   ⟹   XP_038945681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,451,978 - 26,515,185 (-)NCBI
mRatBN7.21220,815,356 - 20,878,557 (-)NCBI
RefSeq Acc Id: XM_063271657   ⟹   XP_063127727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,445,718 - 26,463,153 (-)NCBI
RefSeq Acc Id: XR_005491670
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,447,258 - 26,515,180 (-)NCBI
mRatBN7.21220,810,581 - 20,878,556 (-)NCBI
RefSeq Acc Id: XR_005491671
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81226,450,502 - 26,515,182 (-)NCBI
mRatBN7.21220,813,878 - 20,878,556 (-)NCBI
RefSeq Acc Id: NP_001264323   ⟸   NM_001277394
- UniProtKB: D3ZQH1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001957   ⟸   ENSRNOT00000001957
RefSeq Acc Id: XP_038945678   ⟸   XM_039089750
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038945681   ⟸   XM_039089753
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A836 (UniProtKB/TrEMBL),   A6J0A5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945680   ⟸   XM_039089752
- Peptide Label: isoform X3
- UniProtKB: A6J0A5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000088438   ⟸   ENSRNOT00000097877
Ensembl Acc Id: ENSRNOP00000090867   ⟸   ENSRNOT00000115141
RefSeq Acc Id: XP_063127727   ⟸   XM_063271657
- Peptide Label: isoform X2
Protein Domains
cwf21

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQH1-F1-model_v2 AlphaFold D3ZQH1 1-648 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587868 AgrOrtholog
BioCyc Gene G2FUF-19636 BioCyc
Ensembl Genes ENSRNOG00000001439 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001957 ENTREZGENE
  ENSRNOT00000001957.9 UniProtKB/TrEMBL
  ENSRNOT00000097877.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.420 UniProtKB/TrEMBL
InterPro mRNA_splic_Cwf21 UniProtKB/TrEMBL
  SRRM3_cwf21 UniProtKB/TrEMBL
  SRRM_C UniProtKB/TrEMBL
  SRRM_Domain-Containing UniProtKB/TrEMBL
NCBI Gene Srrm3 ENTREZGENE
PANTHER SERINE/ARGININE REPETITIVE MATRIX PROTEIN 3 UniProtKB/TrEMBL
  SERINE/ARGININE REPETITIVE MATRIX PROTEIN 3-RELATED UniProtKB/TrEMBL
Pfam cwf21 UniProtKB/TrEMBL
  SRRM_C UniProtKB/TrEMBL
PhenoGen Srrm3 PhenoGen
RatGTEx ENSRNOG00000001439 RatGTEx
SMART cwf21 UniProtKB/TrEMBL
UniProt A0A8I6A836 ENTREZGENE, UniProtKB/TrEMBL
  A6J0A5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQH1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-10-28 Srrm3  serine/arginine repetitive matrix 3  LOC685890  hypothetical protein LOC685890  Data merged from RGD:1588996 737654 APPROVED
2010-04-23 Srrm3  serine/arginine repetitive matrix 3  LOC685906  similar to splicing coactivator subunit SRm300  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC685890  hypothetical protein LOC685890      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC685906  similar to splicing coactivator subunit SRm300      Symbol and Name status set to provisional 70820 PROVISIONAL