Bss119 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
QTL Registration

QTL: Bss119 (Bone structure and strength QTL 119) Rattus norvegicus

Symbol: Bss119
Name: Bone structure and strength QTL 119
RGD ID: 11530002
Trait: lumbar vertebra area   (VT:0010570)    
Measurement Type: lumbar vertebra area   (CMO:0001688)    
LOD Score: 16.39
P Value: 4.0E-17
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01223,920,656 - 24,394,383RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01225,918,064 - 26,391,686RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41222,000,595 - 22,501,174RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: NAft:HS 



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
NAft:HS  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Fine mapping of bone structure and strength QTLs in heterogeneous stock rat. Alam I, etal., Bone. 2015 Dec;81:417-26. doi: 10.1016/j.bone.2015.08.013. Epub 2015 Aug 19.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (rs197969186)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01223,920,656 - 23,920,656RGD
Rnor_5.01225,918,064 - 25,918,064RGD
RGSC_v3.41222,000,595 - 22,000,595RGD
Peak: (rs196994347)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01224,078,608 - 24,078,608RGD
Rnor_5.01226,075,911 - 26,075,911RGD
RGSC_v3.41222,185,260 - 22,185,260RGD
Flank 2: (rs197046678)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01224,394,383 - 24,394,383RGD
Rnor_5.01226,391,686 - 26,391,686RGD
RGSC_v3.41222,501,174 - 22,501,174RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 1524 HS rats (728 male, 796 female) were used. 11528619
qtl_general measurement method: Rats on a standard diet were euthanized at 17 to 20 weeks of age, and lumbar vertebrae (L3-5) were scanned using DXA (PIXImus II mouse densitometer; Lunar Corp., Madison, WI, USA) with ultra-high resolution (0.18x0.18 mm/pixel). 11528619