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Gene: Elmod2 (ELMO domain containing 2) Rattus norvegicus

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Symbol:

Elmod2

Name:

ELMO domain containing 2

RGD ID:

1587598

Description:

Predicted to enable GTPase activator activity. Predicted to be involved in regulation of defense response to virus. Orthologous to human ELMOD2 (ELMO domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ELMO domain-containing protein 2; ELMO domain-containing protein 2-like; ELMO/CED-12 domain containing 2; LOC100910164; LOC102554034; LOC288900; LOC688581; RGD1307344; similar to ELMO domain containing 2; similar to hypothetical protein MGC10084

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ELMOD2 (ELMO domain containing 2)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Elmod2 (ELMO/CED-12 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Elmod2 (ELMO domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ELMOD2 (ELMO domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ELMOD2 (ELMO domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Elmod2 (ELMO domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ELMOD2 (ELMO domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ELMOD2 (ELMO domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Elmod2 (ELMO domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Elmod2 (ELMO domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TRAV23DV6 (T cell receptor alpha variable 23/delta variable 6)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ELMOD2 (ELMO domain containing 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Elmod2 (ELMO/CED-12 domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	elmod2 (ELMO/CED-12 domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10068	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	elmod2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	41,690,713 - 41,710,194 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	41,690,762 - 41,710,194 (+)	Ensembl				GRCr8
GRCr8 Ensembl	18	39,948,145 - 39,949,794 (+)	Ensembl				GRCr8
mRatBN7.2	19	24,786,166 - 24,805,626 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	37,761,420 - 37,763,069 (+)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	19	24,786,241 - 24,805,130 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	31,605,252 - 31,624,687 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	32,259,658 - 32,279,093 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	34,477,735 - 34,497,147 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	24,467,964 - 24,487,445 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	24,467,964 - 24,487,396 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	35,445,968 - 35,465,442 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	26,504,959 - 26,524,391 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	24,325,863 - 24,345,288 (+)	NCBI		Celera
RGSC_v3.1	19	26,511,046 - 26,525,434 (+)	NCBI
Cytogenetic Map	19	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

long QT syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP,ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (EXP,ISO)

cadmium dichloride (ISO)

ciguatoxin CTX1B (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

gentamycin (EXP)

GSK-J4 (ISO)

indometacin (ISO)

ivermectin (ISO)

lead(0) (ISO)

methylmercury chloride (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

quercetin (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

testosterone (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of defense response to virus (IBA,ISO)

Molecular Function

GTPase activator activity (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17452337	PMID:19946888

Genomics

Comparative Map Data

Elmod2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	41,690,713 - 41,710,194 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	41,690,762 - 41,710,194 (+)	Ensembl				GRCr8
GRCr8 Ensembl	18	39,948,145 - 39,949,794 (+)	Ensembl				GRCr8
mRatBN7.2	19	24,786,166 - 24,805,626 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	37,761,420 - 37,763,069 (+)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	19	24,786,241 - 24,805,130 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	31,605,252 - 31,624,687 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	32,259,658 - 32,279,093 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	34,477,735 - 34,497,147 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	24,467,964 - 24,487,445 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	24,467,964 - 24,487,396 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	35,445,968 - 35,465,442 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	26,504,959 - 26,524,391 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	24,325,863 - 24,345,288 (+)	NCBI		Celera
RGSC_v3.1	19	26,511,046 - 26,525,434 (+)	NCBI
Cytogenetic Map	19	q11	NCBI

ELMOD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	140,524,168 - 140,553,770 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	140,524,164 - 140,553,775 (+)	Ensembl			hg38	GRCh38
GRCh37	4	141,445,322 - 141,474,924 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	141,664,802 - 141,691,297 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	141,802,956 - 141,829,448	NCBI
Celera	4	138,775,314 - 138,804,916 (+)	NCBI		Celera
Cytogenetic Map	4	q31.1	NCBI
HuRef	4	137,175,768 - 137,205,375 (+)	NCBI		HuRef
CHM1_1	4	141,422,647 - 141,452,270 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	143,843,841 - 143,873,475 (+)	NCBI		T2T-CHM13v2.0

Elmod2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	84,039,261 - 84,059,115 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	84,039,261 - 84,059,115 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	83,312,632 - 83,332,490 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	83,312,632 - 83,332,486 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	85,836,531 - 85,856,385 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	86,202,737 - 86,222,530 (-)	NCBI		MGSCv36	mm8
Celera	8	87,590,988 - 87,610,941 (-)	NCBI		Celera
Cytogenetic Map	8	C2	NCBI
cM Map	8	39.72	NCBI

Elmod2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955428	3,287,340 - 3,308,733 (-)	Ensembl
ChiLan1.0	NW_004955428	3,289,593 - 3,308,927 (-)	NCBI	ChiLan1.0	ChiLan1.0

ELMOD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	138,400,325 - 138,430,004 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	138,787,965 - 138,818,906 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	132,885,722 - 132,915,379 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	144,195,144 - 144,224,783 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	144,195,144 - 144,224,783 (+)	Ensembl			panPan2	panpan1.1

ELMOD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	2,294,413 - 2,324,715 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	2,297,847 - 2,327,500 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	2,541,045 - 2,572,267 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	2,358,893 - 2,390,169 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	2,358,899 - 2,390,148 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	2,296,052 - 2,327,304 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	2,657,239 - 2,688,530 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	3,013,255 - 3,044,489 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Elmod2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	49,834,188 - 49,866,116 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936535	7,274,987 - 7,297,987 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936535	7,271,528 - 7,299,311 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELMOD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	86,527,542 - 86,546,654 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	86,527,970 - 86,546,652 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	91,962,171 - 91,979,735 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELMOD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	87,456,626 - 87,486,523 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	87,456,645 - 87,486,515 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	66,983,615 - 67,012,628 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Elmod2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004625006	123,502 - 147,483 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004625006	123,036 - 144,876 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Elmod2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	16,907,685 - 16,924,351 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Elmod2
150 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	537
Count of miRNA genes:	267
Interacting mature miRNAs:	352
Transcripts:	ENSRNOT00000031614
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	31287532	51431640	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	40727092	54856850	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	40727092	54856850	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	40727092	54856850	Rat
61407	Scl12	Serum cholesterol level QTL 12		0.001	blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	19	30099383	47207961	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014916 ⟹ ENSRNOP00000067169

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	37,761,420 - 37,763,069 (+)	Ensembl
Rnor_6.0 Ensembl	18	38,847,632 - 38,853,405 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000031614 ⟹ ENSRNOP00000037996

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	41,690,762 - 41,710,194 (+)	Ensembl
mRatBN7.2 Ensembl	19	24,786,241 - 24,805,130 (+)	Ensembl
Rnor_6.0 Ensembl	19	24,467,964 - 24,487,396 (-)	Ensembl

RefSeq Acc Id:

NM_001109506 ⟹ NP_001102976

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	41,690,762 - 41,710,194 (+)	NCBI
mRatBN7.2	19	24,786,192 - 24,805,626 (+)	NCBI
Rnor_6.0	19	24,467,964 - 24,487,396 (-)	NCBI
Rnor_5.0	19	35,445,968 - 35,465,442 (-)	NCBI
RGSC_v3.4	19	26,504,959 - 26,524,391 (+)	RGD
Celera	19	24,325,863 - 24,345,288 (+)	RGD

Sequence:

show sequence

GGAGCGCTCCGCGTAGAGCGTCGTTTCCGTTGCCGGTGTTTGCAGCTGGGGGAAACCGAGGCAG
TGCCAGCTTCCCCCTAGTTCTTCCGCTTCTGTGAGGAAAACATGTTCCTTTCTTTGTGGGAGTT
TTTCTATGGACACTTTTTCCGATTTTGGATGAAATGGGTTTTACGACAAATGACTGGAAAGTGT
GAATTGCAGCGAATTTTTGACACCTATGGAGGTGCACAGAGGACCTACAGAATAGAAAATTCCT
TGACATATTCCAAGAGTAAGGTCCTACAGAATGCAACACGAGTTGCCGAGAGCGACCTGGACAG
GTGCATAGTGGACATCATGAAGGAAAAGAAGATCTGCCCCGAGAAGGACAGCAGTTTTCAAATC
TGCATGAGGACATGCTTACTGCAGATCACTGGCTATAGACAGCTCTACCATGACGTAGAAAATG
TGAGGAAAAAGCCCTACGATTCTGCCAATGCACAGCATGAGAAGCTGCTCCTCAAGCTTTGGAG
TCTTCTGATGCCAACGAAAAAGTTGAAGGCCCGGATCTCCAAGCAGTGGGCAGACATTGGTTTC
CAAGGCGATGATCCCAAAACAGACTTCAGAGGCATGGGCATACTCGGACTGATCAATCTTGTGT
ATTTCAGCGAGAACTACACCAGCGAAGCACATCAGATCCTCTCCCGCTCAAATCACCCCAAGTT
AGGGTATTCTTATGCAATAGTTGGGATCAATCTCACCGAGATGGCTTACAGCTTATTGAAGAGC
GAGGCGCTGAAGCTTCATCTCTACAACTTCGTCCCTGGGGTACCCACAATGGAGCACTTTCACC
AGTTCTACTGTTACCTTGTCTATGAATTTGACAAGTTTTGGCTTGAAGAAGAGCCAGAAAGCAT
TATGTACTTCAACTTGTACAGAGAGAAGTTTCACGAGAGGATCAAAGGACTCTTGATGGATTGC
AATGCTGTGCTCACTCTGAAAACATGAACACCACTTATCTTCTCTTTCTACCACCTTTTGCACA
CAAAACAGAATTTATATGTTATTATAGAAATTATCTGATTAACTACACTCATATAATTTCCTAC
AAAAATACTTCAGAAACTCTATTTAAGGAAGCTAGAGGACAATCAGTGTGTGTTTACATTCGTT
TATACCCTGTTCTCCAAAGAGCCACACCGTCCAGAGCCACGCCAACTACAGTTTGGAGCTTGGG
TCTAGCCTCTTAGTTTCAAAAGTATAAATCAGGTATATTTATATTTAGCCAACTGATCAAAATG
TGCACAAGTCTGTTCTCATTTTATGTGCTGTGCTCCCGTGCTGGTGTCATTTAAGACCTCTGCA
GGGTCCCTGTTCACTCTGGAAGTGGCTTCTGAATGCTCTTGGTCTTTTATCTCTAGGCAAATCA
GCACGGGGTATCGTCTGAGGCTTTCTTTGTGTCTCTAGCTCTTGTCAAGAAGTCCTATCCTTAG
AGCAGAGAGAGCGAGGCTCTGTCAGGGAGGGTGAACAATCATGGCGTCCTTTGATTTCTCCGGT
GCCTGACTAGCAGAAATGAGAGGATGGCGGTGCTGGTGACTAGCAGCTTCTGTAGAAGTAGCCC
ACGTTGGAGGTCTTATTTTAAGGACTCTAGGCATTTACTCCAGTCCAGTATTTTCTTTTATCAG
CTGTAGAAGGAACCTTCCTCAGAGCCCCACTGGAGGCCTGTGTGTTTAGAAAGGAGGTGCCTCT
GCTGGGAAAATCTTGATTGCATTTGAAACATAGCTTCTTTTTCGATTAAACTCTCTTTGAAACA
CAAGAAGAAAACTTAGAGCTTTTTAGACATCTGTTCCCGATCATTGGTGTATTTGACTTGCTGT
TCTCTTTTGCTTACCCTTGCTTTGCCTCTGGTGTTTCTGGCTGATGTTGTAGGGACCGGGTTAG
CAGCCTGTGGGGTGCTACCATAGCCCGGATCATGACTGTGCATTTTTGTATAGCTTTATTCTCC
AAAATCTCAGGAGGGCAGCAAGTACTGTGGAGGGTTATACGTGAGGAGATTCTGATGGGGCGGT
ACCCTCTTGGCATGTGTTAAGAGATTTATTCCCAGAGCCAAACTAAAAGAGCTTAAAGACTGGA
TGAGAAACACTGCTGAGTTCCGTGGAAACCAGTTTATGACATCATAGTTTAACCTAATACATGG
TGATGTTTTGCACATCTTTTAATATCAGGTATGTAATGACTAGCTTGTGTGATAGAGGGAAGTT
TGCTGCTTTCCCACAATTGTTCGTGTCTTCTGACAAGCCTGTCTTCACACTTGTCAGAGAGTGA
GAGAGCGAGGGAGCACGGGACGGGTGTCCTTAGGAGAGCCACAGCTGTTGTGTTGTGTAGGCTG
CATTGCAGAGCATGGGTTCAAACTGTTTCCTTAAGGAATATGAAACTTTATTTTTAAGTAGGTT
TGCTTTATAATACTAGAAAGGATTTAACTTTTCAGTATTATAGGAATTTAATAATTGATTTCTT
ATAGGGGATTTGTCAACCCTGGTAACATAATTTCATTTTTAAAAAATCTTGTCGTCCAGGGTTT
ATGATATATTGTGTCGCCAGACCCTAACAAGGAGCACATGTTTACCGTTATTGTTCACTGTATT
ATAGTGTGAAGTCTTCCATGGACAGCAGCTGTATTTGTCTGTAACTTTTGTGCTAAAAGTACTT
GTGCATGTATGTTAATCTTTCAGCAGCCAGATCTTGGACTGATTTAACTCTTTATCAGCATATG
TAATAAAACGACTACTTGAAGTATGAAAGAGGAAATAATAATTAATAATAATAAGTAATTATTT
CCTGACAGAAAATAACTCTATAATGATGTGAAGAACATATTATCATAGTTAGGTTAATGTCACA
GTCTTTAAATCCTCCTTTGTACATTACAGATATTGTTTGTTTGGTTTTTTTTTTGTTAGAATTA
TCATTAGCCATTTCATATAATTATATAGTGAACTGATCTGTAAGCCAATTCCAGCTTCAAAGTT
CTGCTATTCTGGAAGCTTGACTGTCACTAGTTGTACACGAGAATTTAACAGGAAGCCCCAGACT
GATGGGCTAGGTGTATGCAGGAAAGGAACAGCACAGTCAGTTCCCCTTACTTGCAGCAGACATC
AGAACTTCATGCAGTTTTAAAGCCCATGTTTAGATGCTCACCTGTGTCTAGAACTATTAAAATT
ACAATGTAGCAAATTGGTAGTAATGGCATTGAGTAGCAAGAAAGTTATGTTACTTTTAGATTAA
ATAAAATAGAATCAATGTGGAGATGAATTCTTGTATATGTGAAGGTGAAGAAATTTTACCGGTG
ACAAGAGTAGCATAAAATATATAAACACAACATTTAGCAGTTCAAATGCTCTGAAAGACAATCT
TTTTAAAAATGGGAGACACTTAGTTATCTCACAGAACCTAGACCAGGCTCTTTGTAAATAAATG
TAACAGTACAGCTAGGTATAAAAATGATTTTAAACTGGCACCGTTTACAGTTCAAAAATCAAAT
TTTTTTTCTTAAAAATTTCTATCCTGTTTTTTCCTTCTATTGTAGAGCTACTAGGATTTGTATT
ATTTTTCTATGAAAATGTATGCAAAAAAAAGACTAAAGAGTCTTCCCTCAGTGTTGGCTATCAT
ATCATTCTGTCCATTGAGAATATTCAGTGAAAGGGATTTTGATTAAAAGTTTTGCTCAAAGAAA
AACGATTACTTGGGTGTGAAAAGCAGCTCTTCGTTTCTGCAGCAGAAGGGTATCAGCCAAATAA
AAGATGGAGTTTGCCCGGGAGGGTGGGAGTTTATTCTTGTGCTCATAACTGGGGACCAGCAGCT
GCGTCCTCAGAATAGGTGCTCTACTCTAACCCAGGAAGGGCGGTGCTTCTGGGGAGGCTTTGTC
ATGTTCACATGTGAGTAGCCTCTCCACACAAGCAGCTGTTAAATGAAGATGAGGGGACTTGTTA
ACACTCTGAGGAAAATCATGATGTGTATTTTTGGTTTTTTCTGTCTCCAGTTTTTTGATGAGAT
AAAATTTTTAAATGTAATGTAGGTAGGACCCAACGACCACATTGACTTTGGTAGGGTAGTTCTG
TGTTTTGTTAAAGTACTGACCAATATTTAAGCTGTAGTGTTCCCTGGAGGGAAAGTACCCGTTG
GTAACTTTGTCTATTTTGCATCAAGCATTTGAGTTTCATGTAAAAGCAGTAGTGTGAAATGTGA
TGTCCTTTTGTTTGTAATGTTAAGTGAGAGAATAAAATCACAGCTGAAACTGTTGTAAGCCTTT
CCATGGATGCTTGGGCTGCCGTTGTGTCCTCCACCCCTATTTAAGTCATTTGAATTCTGGAAAC
AATACTTAAATTACAGGTAAGTTGTGAGACTCTTTTTTTTTTTTTAATTTTTATTTATCTAATG
TATATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAACCTCTGGAAG
AGCAATCAGTACTCTTAACCACTGAGCCATCTCTCCAGATCCCAAGTTGTGAGACTCTTAAGTC
ACCTTGTAATTGTATAAGGTGTTACTGACTGAGAGTAAGTGGCTCTGAGACCAAAAGTATACTT
CGTTTTACAAGAAGCCACCATTTCACCTGAACTCACCGCATTCCACCCAGTTTTCACCAAGGGT
AGAAGTGATTCATGCTGCTCATCATTTTCTTACACTGTCCTCGTTCTATTTACATACTAATACT
CGATTTTTTCAGTTTCGTGGCATTCCAGTGTGTG

hide sequence

RefSeq Acc Id:

XM_006255302 ⟹ XP_006255364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	41,690,754 - 41,709,701 (+)	NCBI
mRatBN7.2	19	24,786,312 - 24,801,843 (+)	NCBI
Rnor_6.0	19	24,468,446 - 24,487,279 (-)	NCBI
Rnor_5.0	19	35,445,968 - 35,465,442 (-)	NCBI

Sequence:

show sequence

TTCTCTCACCCCGAGTTGCTGGCGTGCGGTTGCGCCAGCCTCGCAGTCTTCCCGCGGATAGTCC
GCAGGGTGCCGAGGCCGTCGGGGCTTTGTGCAGTGTTCCCGCGCGCGAGAGGGGCGGGACGGCG
CGGTGCCCTCGGGGCTCGCACTCGGTTTCCCGAGGCCCTGGGGCCCGGCGGGACGGCCTGCGGG
CGCCTGGCAGTTCTGCCGCCTTGGTCCCGACAAGCGCCGAAGGGATGACTCATTTTAAAGACCC
TGATCTGCGCGTCCCGCACCGACCCCCGGTGCCCTGCCCTGCGGGGATTTCGAATTTGACAGCT
CCCTCGGCCGGGCGCAGAGAGGGAAAACATGTTCCTTTCTTTGTGGGAGTTTTTCTATGGACAC
TTTTTCCGATTTTGGATGAAATGGGTTTTACGACAAATGACTGGAAAGTGTGAATTGCAGCGAA
TTTTTGACACCTATGGAGGTGCACAGAGGACCTACAGAATAGAAAATTCCTTGACATATTCCAA
GAGTAAGGTCCTACAGAATGCAACACGAGTTGCCGAGAGCGACCTGGACAGGTGCATAGTGGAC
ATCATGAAGGAAAAGAAGATCTGCCCCGAGAAGGACAGCAGTTTTCAAATCTGCATGAGGACAT
GCTTACTGCAGATCACTGGCTATAGACAGCTCTACCATGACGTAGAAAATGTGAGGAAAAAGCC
CTACGATTCTGCCAATGCACAGCATGAGAAGCTGCTCCTCAAGCTTTGGAGTCTTCTGATGCCA
ACGAAAAAGTTGAAGGCCCGGATCTCCAAGCAGTGGGCAGACATTGGTTTCCAAGGCGATGATC
CCAAAACAGACTTCAGAGGCATGGGCATACTCGGACTGATCAATCTTGTGTATTTCAGCGAGAA
CTACACCAGCGAAGCACATCAGATCCTCTCCCGCTCAAATCACCCCAAGTTAGGGTATTCTTAT
GCAATAGTTGGGATCAATCTCACCGAGATGGCTTACAGCTTATTGAAGAGCGAGGCGCTGAAGC
TTCATCTCTACAACTTCGTCCCTGGGGTACCCACAATGGAGCACTTTCACCAGTTCTACTGTTA
CCTTGTCTATGAATTTGACAAGTTTTGGCTTGAAGAAGAGCCAGAAAGCATTATGTACTTCAAC
TTGTACAGAGAGAAGTTTCACGAGAGGATCAAAGGACTCTTGATGGATTGCAATGCTGTGCTCA
CTCTGAAAACATGAACACCACTTATCTTCTCTTTCTACCACCTTTTGCACACAAAACAGAATTT
ATATGTTATTATAGAAATTATCTGATTAACTACACTCATATAATTTCCTACAAAAATACTTCAG
AAACTCTATTTAAGGAAGCTAGAGGACAATCAGTGTGTGTTTACATTCGTTTATACCCTGTTCT
CCAAAGAGCCACACCGTCCAGAGCCACGCCAACTACAGTTTGGAGCTTGGGTCTAGCCTCTTAG
TTTCAAAAGTATAAATCAGGTATATTTATATTTAGCCAACTGATCAAAATGTGCACAAGTCTGT
TCTCATTTTATGTGCTGTGCTCCCATGCTGGTGTCATTTAAAACCTCTGCAGGGTTCCTGTTCA
CTCTGGAAGTGGCTTCTGAATGCTCTTGGTCTTTTATCTCTAGGCAAATCAGCACGGGGTATCG
TCTGAGGCTTTCTTTGTGTCTCTAGCTCTTGTCAAGAAGTCCTATCCTTAGAGCAGAGAGAGCG
AGGCTCTGTCAGGGAGGGTGAACAATCATGGCGTCCTTTGATTTCTCCGGTGCCTGACTAGCAG
AAATGAGAGGATGGCGGTGCTGGTGACTAGCAGCTTCTGTAGAAGTAGCCCACGTTGGAGGTCT
TATTTTAAGGACTCTAGGCATTTACTCCAGTCCAGTATTTTCTTTTATCAGCTGTAGAAGGAAC
CTTCCTCAGAGCCCCACTGGAGGCCTGTGTGTTTAGAAAGGAGGTGCCTCTGCTGGGAAAATCT
TGATTGCATTTGAAACATAGCTTCTTTTTCGATTAAACTCTCTTTGAAACACAAGAAGAAAACT
TAGAGCTTTTTAGACATCTGTTCCCGATCATTGGTGTATTTGACTTGCTGTTCTCTTTTGCTTA
CCCTTGCTTTGCCTCTGGTGTTTCTGGCTGATGTTGTAGGGACCGGGTTAGCAGCCTGTGGGGT
GCTACCATAGCCCGGATCATGACTGTGCATTTTTGTATAGCTTTATTCTCCAAAATCTCAGGAG
GGCAGCAAGTACTGTGGAGGGTTATACGTGAGGAGATTCTGATGGGGCGGTACCCTCTTGGCAT
GTGTTAAGAGATTTATTCCCAGAGCCAAACTAAAAGAGCTTAAAGACTGGATGAGAAACACTGC
TGAGTTCCGTGGAAACCAGTTTATGACATCATAGTTTAACCTAATACATGGTGATGTTTTGCAC
ATCTTTTAATATCAGGTATGTAATGACTAGCTTGTGTGATAGAGGGAAGTTTGCTGCTTTCCCA
CAATTGTTCGTGTCTTCTGACAAGCCTGTCTTCACACTTGTCAGAGAGTGAGAGAGCGAGGGAG
CACGGGACGGGTGTCCTTAGGAGAGCCACAGCTGTTGTGTTGTGTAGGCTGCATTGCAGAGCAT
GGGTTCAAACTGTTTCCTTAAGGAATATGAAACTTTATTTTTAAGTAGGTTTGCTTTATAATAC
TAGAAAGGATTTAACTTTTCAGTATTATAGGAATTTAATAATTGATTTCTTATAGGGGATTTGT
CAACCCTGGTAACATAATTTCATTTTTAAAAAATCTTGTCGTCCAGGGTTTATGATATATTGTG
TCGCCAGACCCTAACAAGGAGCACATGTTTACCGTTATTGTTCACTGTATTATAGTGTGAAGTC
TTCCATGGACAGCAGCTGTATTTGTCTGTAACTTTTGTGCTAAAAGTACTTGTGCATGTATGTT
AATCTTTCAGCAGCCAGATCTTGGACTGATTTAACTCTTTATCAGCATATGTAATAAAACGACT
ACTTGAAGTATGAAAGAGGAAATAATAATTAATAATAATAAGTAATTATTTCCTGACAGAAAAT
AACTCTATAATGATGTGAAGAACATATTATCATAGTTAGGTTAATGTCACAGTCTTTAAATCCT
CCTTTGTACATTACAGATATTGTTTGTTTGGTTTTTTTTTTGTTAGAATTATCATTAGCCATTT
CATATAATTATATAGTGAACTGATCTGTAAGCCAATTCCAGCTTCAAAGTTCTGCTATTCTGGA
AGCTTGACTGTCACTAGTTGTACACGAGAATTTAACAGGAAGCCCCAGACTGATGGGCTAGGTG
TATGCAGGAAAGGAACAGCACAGTCAGTTCCCCTTACTTGCAGCAGACATCAGAACTTCATGCA
GTTTTAAAGCCCATGTTTAGATGCTCACCTGTGTCTAGAACTATTAAAATTACAATGTAGCAAA
TTGGTAGTAATGGCATTGAGTAGCAAGAAAGTTATGTTACTTTTAGATTAAATAAAATAGAATC
AATGTGGAGATGAATTCTTGTATATGTGAAGGTGAAGAAATTTTACCGGTGACAAGAGTAGCAT
AAAATATATAAACACAACATTTAGCAGTTCAAATGCTCTGAAAGACAATCTTTTTAAAAATGGG
AGACACTTAGTTATCTCACAGAACCTAGACCAGGCTCTTTGTAAATAAATGTAACAGTACAGCT
AGGTATAAAAATGATTTTAAACTGGCACCGTTTACAGTTCAAAAATCAAATTTTTTTTCTTAAA
AATTTCTATCCTGTTTTTTCCTTCTATTGTAGAGCTACTAGGATTTGTATTATTTTTCTATGAA
AATGTATGCAAAAAAAAGACTAAAGAGTCTTCCCTCAGTGTTGGCTATCATATCATTCTGTCCA
TTGAGAATATTCAGTGAAAGGGATTTTGATTAAAAGTTTTGCTCAAAGAAAAACGATTACTTGG
GTGTGAAAAGCAGCTCTTCGTTTCTGCAGCAGAAGGGTATCAGCCAAATAAAAGATGGAGTTTG
CCCGGGAGGGTGGGAGTTTATTCTTGTGCTCATAACTGGGGACCAGCAGCTGCGTCCTCAGAAT
AGGTGCTCTACTCTAACCCAGGAAGGGCGGTGCTTCTGGGGAGGCTTTGTCATGTTCACATGTG
AGTAGCCTCTCCACACAAGCAGCTGTTAAATGAAGATGAGGGGACTTGTTAACACTCTGAGGAA
AATCATGATGTGTATTTTTGGTTTTTTCTGTCTCCAGTTTTTTGATGAGATAAAATTTTTAAAT
GTAATGTAGGTAGGACCCAACGACCACATTGACTTTGGTAGGGTAGTTCTGTGTTTTGTTAAAG
TACTGACCAATATTTAAGCTGTAGTGTTCCCTGGAGGGAAAGTACCCGTTGGTAACTTTGTCTA
TTTTGCATCAAGCATTTGAGTTTCATGTAAAAGCAGTAGTGTGAAATGTGATGTCCTTTTGTTT
GTAATGTTAAGTGAGAGAATAAAATCACAGCTGAAACTGTTGTAAGCCTTT

hide sequence

RefSeq Acc Id:

XM_006255303 ⟹ XP_006255365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	41,690,713 - 41,709,701 (+)	NCBI
mRatBN7.2	19	24,786,166 - 24,805,138 (+)	NCBI
Rnor_6.0	19	24,471,779 - 24,487,445 (-)	NCBI
Rnor_5.0	19	35,445,968 - 35,465,442 (-)	NCBI

Sequence:

show sequence

CCCCGCCCCCTCAGCCTCCGTGCGGACTTCCGGGTCGCGGCGTTCGCTGGGAGCGCTCCGCGTA
GAGCGTCGTTTCCGTTGCCGGTGTTTGCAGCTGGGGGAAACCGAGGCAGTGCCAGCTTCCCCCT
AGTTCTTCCGCTTCTGTGAGGAAAACATGTTCCTTTCTTTGTGGGAGTTTTTCTATGGACACTT
TTTCCGATTTTGGATGAAATGGGTTTTACGACAAATGACTGGAAAGTGTGAATTGCAGCGAATT
TTTGACACCTATGGAGGTGCACAGAGGACCTACAGAATAGAAAATTCCTTGACATATTCCAAGA
GTAAGGTCCTACAGAATGCAACACGAGTTGCCGAGAGCGACCTGGACAGGTGCATAGTGGACAT
CATGAAGGAAAAGAAGATCTGCCCCGAGAAGGACAGCAGTTTTCAAATCTGCATGAGGACATGC
TTACTGCAGATCACTGGCTATAGACAGCTCTACCATGACGTAGAAAATGTGAGGAAAAAGCCCT
ACGATTCTGCCAATGCACAGCATGAGAAGCTGCTCCTCAAGCTTTGGAGTCTTCTGATGCCAAC
GAAAAAGTTGAAGGCCCGGATCTCCAAGCAGTGGGCAGACATTGGTTTCCAAGGCGATGATCCC
AAAACAGACTTCAGAGGCATGGGCATACTCGGACTGATCAATCTTGTGTATTTCAGCGAGAACT
ACACCAGCGAAGCACATCAGATCCTCTCCCGCTCAAATCACCCCAAGTTAGGTTGGGATCAATC
TCACCGAGATGGCTTACAGCTTATTGAAGAGCGAGGCGCTGAAGCTTCATCTCTACAACTTCGT
CCCTGGGGTACCCACAATGGAGCACTTTCACCAGTTCTACTGTTACCTTGTCTATGAATTTGAC
AAGTTTTGGCTTGAAGAAGAGCCAGAAAGCATTATGTACTTCAACTTGTACAGAGAGAAGTTTC
ACGAGAGGATCAAAGGACTCTTGATGG

hide sequence

RefSeq Acc Id:

XM_063278289 ⟹ XP_063134359

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	41,690,867 - 41,709,701 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102976	(Get FASTA)	NCBI Sequence Viewer
	XP_006255364	(Get FASTA)	NCBI Sequence Viewer
	XP_006255365	(Get FASTA)	NCBI Sequence Viewer
	XP_063134359	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92282	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037996
	ENSRNOP00000037996.2
	ENSRNOP00000067169.2

RefSeq Acc Id:

NP_001102976 ⟸ NM_001109506

- UniProtKB:

D3ZNV6 (UniProtKB/TrEMBL), A6IYF4 (UniProtKB/TrEMBL), M0RC60 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFLSLWEFFYGHFFRFWMKWVLRQMTGKCELQRIFDTYGGAQRTYRIENSLTYSKSKVLQNATR
VAESDLDRCIVDIMKEKKICPEKDSSFQICMRTCLLQITGYRQLYHDVENVRKKPYDSANAQHE
KLLLKLWSLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQIL
SRSNHPKLGYSYAIVGINLTEMAYSLLKSEALKLHLYNFVPGVPTMEHFHQFYCYLVYEFDKFW
LEEEPESIMYFNLYREKFHERIKGLLMDCNAVLTLKT

hide sequence

RefSeq Acc Id:	XP_006255364 ⟸ XM_006255302
- Peptide Label:	isoform X1
- UniProtKB:	D3ZNV6 (UniProtKB/TrEMBL), A6IYF4 (UniProtKB/TrEMBL), M0RC60 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFLSLWEFFYGHFFRFWMKWVLRQMTGKCELQRIFDTYGGAQRTYRIENSLTYSKSKVLQNATR VAESDLDRCIVDIMKEKKICPEKDSSFQICMRTCLLQITGYRQLYHDVENVRKKPYDSANAQHE KLLLKLWSLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQIL SRSNHPKLGYSYAIVGINLTEMAYSLLKSEALKLHLYNFVPGVPTMEHFHQFYCYLVYEFDKFW LEEEPESIMYFNLYREKFHERIKGLLMDCNAVLTLKT hide sequence

RefSeq Acc Id:

XP_006255365 ⟸ XM_006255303

- Peptide Label:

isoform X2

- Sequence:

show sequence

MFLSLWEFFYGHFFRFWMKWVLRQMTGKCELQRIFDTYGGAQRTYRIENSLTYSKSKVLQNATR
VAESDLDRCIVDIMKEKKICPEKDSSFQICMRTCLLQITGYRQLYHDVENVRKKPYDSANAQHE
KLLLKLWSLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQIL
SRSNHPKLGWDQSHRDGLQLIEERGAEASSLQLRPWGTHNGALSPVLLLPCL

hide sequence

Ensembl Acc Id:

ENSRNOP00000037996 ⟸ ENSRNOT00000031614

Ensembl Acc Id:

ENSRNOP00000067169 ⟸ ENSRNOT00000014916

RefSeq Acc Id:	XP_063134359 ⟸ XM_063278289
- Peptide Label:	isoform X2

Protein Domains

ELMO

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZNV6-F1-model_v2	AlphaFold	D3ZNV6	1-293	view protein structure
AF-M0RC60-F1-model_v2	AlphaFold	M0RC60	1-293	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700996

Promoter ID:

EPDNEW_R11519

Type:

multiple initiation site

Name:

Elmod2_1

Description:

ELMO domain containing 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	24,487,384 - 24,487,444	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1587598	AgrOrtholog
BioCyc Gene	G2FUF-6006	BioCyc
Ensembl Genes	ENSRNOG00000011225	Ensembl, UniProtKB/TrEMBL
	ENSRNOG00000028176	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014916.8	UniProtKB/TrEMBL
	ENSRNOT00000031614	ENTREZGENE
	ENSRNOT00000031614.5	UniProtKB/TrEMBL
InterPro	ELMO_domain-containing	UniProtKB/TrEMBL
	Engulfment_cell_motility_ELMO	UniProtKB/TrEMBL
KEGG Report	rno:688581	UniProtKB/TrEMBL
NCBI Gene	688581	ENTREZGENE
PANTHER	ENGULFMENT AND CELL MOTILITY	UniProtKB/TrEMBL
	PTHR12771:SF47	UniProtKB/TrEMBL
Pfam	ELMO_CED12	UniProtKB/TrEMBL
PhenoGen	Elmod2	PhenoGen
PROSITE	ELMO	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011225	RatGTEx
	ENSRNOG00000028176	RatGTEx
UniProt	A6IYF4	ENTREZGENE, UniProtKB/TrEMBL
	D3ZNV6	ENTREZGENE, UniProtKB/TrEMBL
	M0RC60	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Elmod2	ELMO domain containing 2	LOC102554034	ELMO domain-containing protein 2-like	Data merged from RGD:7532326	737654	PROVISIONAL
2016-03-08	Elmod2	ELMO domain containing 2	Elmod2	ELMO/CED-12 domain containing 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-29	LOC102554034	ELMO domain-containing protein 2-like	LOC100910164	ELMO domain-containing protein 2-like	Data merged from RGD:6499732	737654	PROVISIONAL
2015-07-29	LOC102554034	ELMO domain-containing protein 2-like	RGD1307344	similar to hypothetical protein MGC10084	Data merged from RGD:1307344	737654	PROVISIONAL
2013-12-17	LOC102554034	ELMO domain-containing protein 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2012-07-05	LOC100910164	ELMO domain-containing protein 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-10-28	Elmod2	ELMO/CED-12 domain containing 2	Elmod2	ELMO domain containing 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1307344	similar to hypothetical protein MGC10084	RGD1307344_predicted	similar to hypothetical protein MGC10084 (predicted)	'predicted' is removed	2292626	APPROVED
2008-03-05	Elmod2	ELMO domain containing 2	LOC688581	similar to ELMO domain containing 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC688581	similar to ELMO domain containing 2	LOC686276	similar to ELMO domain containing 2	Data merged from RGD:1584288	1643240	APPROVED
2006-11-19	LOC688581	similar to ELMO domain containing 2			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC686276	similar to ELMO domain containing 2			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	RGD1307344_predicted	similar to hypothetical protein MGC10084 (predicted)	LOC288900_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC288900_predicted	similar to hypothetical protein MGC10084 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar