Elmod2 (ELMO domain containing 2) - Rat Genome Database

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Gene: Elmod2 (ELMO domain containing 2) Chinchilla lanigera
Analyze
Symbol: Elmod2
Name: ELMO domain containing 2
RGD ID: 8932390
Description: ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN regulation of defense response to virus (ortholog); ASSOCIATED WITH long QT syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ELMO domain-containing protein 2; ELMO/CED-12 domain containing 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554283,287,340 - 3,308,733 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554283,289,593 - 3,308,927 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Elmod2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554283,287,340 - 3,308,733 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554283,289,593 - 3,308,927 (-)NCBIChiLan1.0ChiLan1.0
ELMOD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384140,524,168 - 140,553,770 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4140,524,168 - 140,553,770 (+)EnsemblGRCh38hg38GRCh38
GRCh374141,445,322 - 141,474,924 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364141,664,802 - 141,691,297 (+)NCBINCBI36Build 36hg18NCBI36
Build 344141,802,956 - 141,829,448NCBI
Celera4138,775,314 - 138,804,916 (+)NCBICelera
Cytogenetic Map4q31.1NCBI
HuRef4137,175,768 - 137,205,375 (+)NCBIHuRef
CHM1_14141,422,647 - 141,452,270 (+)NCBICHM1_1
T2T-CHM13v2.04143,843,841 - 143,873,475 (+)NCBIT2T-CHM13v2.0
Elmod2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,039,261 - 84,059,115 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,039,261 - 84,059,115 (-)EnsemblGRCm39 Ensembl
GRCm38883,312,632 - 83,332,490 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,312,632 - 83,332,486 (-)EnsemblGRCm38mm10GRCm38
MGSCv37885,836,531 - 85,856,385 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36886,202,737 - 86,222,530 (-)NCBIMGSCv36mm8
Celera887,590,988 - 87,610,941 (-)NCBICelera
Cytogenetic Map8C2NCBI
cM Map839.72NCBI
Elmod2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,690,713 - 41,710,194 (+)NCBIGRCr8
mRatBN7.21924,786,166 - 24,805,626 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,786,241 - 24,805,130 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1931,605,252 - 31,624,687 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01932,259,658 - 32,279,093 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01934,477,735 - 34,497,147 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01924,467,964 - 24,487,445 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1924,467,964 - 24,487,396 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01935,445,968 - 35,465,442 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41926,504,959 - 26,524,391 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11926,511,046 - 26,525,434 (+)NCBI
Celera1924,325,863 - 24,345,288 (+)NCBICelera
Cytogenetic Map19q11NCBI
ELMOD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23138,400,325 - 138,430,004 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14138,787,965 - 138,818,906 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04132,885,722 - 132,915,379 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14144,195,144 - 144,224,783 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4144,195,144 - 144,224,783 (+)Ensemblpanpan1.1panPan2
ELMOD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1192,294,413 - 2,324,715 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl192,297,847 - 2,327,500 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha192,541,045 - 2,572,267 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0192,358,893 - 2,390,169 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl192,358,899 - 2,390,148 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1192,296,052 - 2,327,304 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0192,657,239 - 2,688,530 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0193,013,255 - 3,044,489 (-)NCBIUU_Cfam_GSD_1.0
Elmod2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530149,834,188 - 49,866,116 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365357,274,987 - 7,297,987 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365357,271,528 - 7,299,311 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELMOD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl886,527,542 - 86,546,654 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1886,527,970 - 86,546,652 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2891,962,171 - 91,979,735 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELMOD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1787,456,626 - 87,486,523 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl787,456,645 - 87,486,515 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603766,983,615 - 67,012,628 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elmod2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004625006123,502 - 147,483 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004625006123,036 - 144,876 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000012049   ⟹   ENSCLAP00000011909
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554283,287,340 - 3,308,733 (-)Ensembl
RefSeq Acc Id: XM_005386672   ⟹   XP_005386729
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554283,289,593 - 3,308,733 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005386673   ⟹   XP_005386730
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554283,289,593 - 3,308,927 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005386729 (Get FASTA)   NCBI Sequence Viewer  
  XP_005386730 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011909
  ENSCLAP00000011909.1
RefSeq Acc Id: XP_005386730   ⟸   XM_005386673
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VCB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005386729   ⟸   XM_005386672
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000011909   ⟸   ENSCLAT00000012049
Protein Domains
ELMO


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008217 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012049 ENTREZGENE
  ENSCLAT00000012049.1 UniProtKB/TrEMBL
InterPro ELMO_dom UniProtKB/TrEMBL
NCBI Gene Elmod2 ENTREZGENE
PANTHER ENGULFMENT AND CELL MOTILITY UniProtKB/TrEMBL
  PTHR12771:SF47 UniProtKB/TrEMBL
Pfam ELMO_CED12 UniProtKB/TrEMBL
PROSITE ELMO UniProtKB/TrEMBL
UniProt A0A8C2VCB8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Elmod2  ELMO domain containing 2    ELMO/CED-12 domain containing 2  Symbol and/or name change 5135510 APPROVED