Elmod2 (ELMO domain containing 2) - Rat Genome Database

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Gene: Elmod2 (ELMO domain containing 2) Heterocephalus glaber
Analyze
Symbol: Elmod2
Name: ELMO domain containing 2
RGD ID: 18919652
Description: ENCODES a protein that exhibits GTPase activator activity (inferred); INVOLVED IN regulation of defense response to virus (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ELMO domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004625006123,502 - 147,483 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004625006123,036 - 144,876 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Elmod2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004625006123,502 - 147,483 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004625006123,036 - 144,876 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ELMOD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384140,524,168 - 140,553,770 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4140,524,168 - 140,553,770 (+)EnsemblGRCh38hg38GRCh38
GRCh374141,445,322 - 141,474,924 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364141,664,802 - 141,691,297 (+)NCBINCBI36Build 36hg18NCBI36
Build 344141,802,956 - 141,829,448NCBI
Celera4138,775,314 - 138,804,916 (+)NCBICelera
Cytogenetic Map4q31.1NCBI
HuRef4137,175,768 - 137,205,375 (+)NCBIHuRef
CHM1_14141,422,647 - 141,452,270 (+)NCBICHM1_1
T2T-CHM13v2.04143,843,841 - 143,873,475 (+)NCBIT2T-CHM13v2.0
Elmod2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,039,261 - 84,059,115 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,039,261 - 84,059,115 (-)EnsemblGRCm39 Ensembl
GRCm38883,312,632 - 83,332,490 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,312,632 - 83,332,486 (-)EnsemblGRCm38mm10GRCm38
MGSCv37885,836,531 - 85,856,385 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36886,202,737 - 86,222,530 (-)NCBIMGSCv36mm8
Celera887,590,988 - 87,610,941 (-)NCBICelera
Cytogenetic Map8C2NCBI
cM Map839.72NCBI
Elmod2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,690,713 - 41,710,194 (+)NCBIGRCr8
mRatBN7.21924,786,166 - 24,805,626 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,786,241 - 24,805,130 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1931,605,252 - 31,624,687 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01932,259,658 - 32,279,093 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01934,477,735 - 34,497,147 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01924,467,964 - 24,487,445 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1924,467,964 - 24,487,396 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01935,445,968 - 35,465,442 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41926,504,959 - 26,524,391 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11926,511,046 - 26,525,434 (+)NCBI
Celera1924,325,863 - 24,345,288 (+)NCBICelera
Cytogenetic Map19q11NCBI
Elmod2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554283,287,340 - 3,308,733 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554283,289,593 - 3,308,927 (-)NCBIChiLan1.0ChiLan1.0
ELMOD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23138,400,325 - 138,430,004 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14138,787,965 - 138,818,906 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04132,885,722 - 132,915,379 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14144,195,144 - 144,224,783 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4144,195,144 - 144,224,783 (+)Ensemblpanpan1.1panPan2
ELMOD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1192,294,413 - 2,324,715 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl192,297,847 - 2,327,500 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha192,541,045 - 2,572,267 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0192,358,893 - 2,390,169 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl192,358,899 - 2,390,148 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1192,296,052 - 2,327,304 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0192,657,239 - 2,688,530 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0193,013,255 - 3,044,489 (-)NCBIUU_Cfam_GSD_1.0
Elmod2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530149,834,188 - 49,866,116 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365357,274,987 - 7,297,987 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365357,271,528 - 7,299,311 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELMOD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl886,527,542 - 86,546,654 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1886,527,970 - 86,546,652 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2891,962,171 - 91,979,735 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELMOD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1787,456,626 - 87,486,523 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl787,456,645 - 87,486,515 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603766,983,615 - 67,012,628 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000000173   ⟹   ENSHGLP00000000143
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004625006123,502 - 147,483 (+)Ensembl
RefSeq Acc Id: XM_004875404   ⟹   XP_004875461
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004625006123,039 - 144,876 (+)NCBI
RefSeq Acc Id: XM_004875405   ⟹   XP_004875462
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004625006123,455 - 144,876 (+)NCBI
RefSeq Acc Id: XM_004875406   ⟹   XP_004875463
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004625006123,799 - 144,876 (+)NCBI
RefSeq Acc Id: XM_013069525   ⟹   XP_012924979
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004625006123,036 - 144,876 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004875461 (Get FASTA)   NCBI Sequence Viewer  
  XP_004875462 (Get FASTA)   NCBI Sequence Viewer  
  XP_004875463 (Get FASTA)   NCBI Sequence Viewer  
  XP_012924979 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000000143
GenBank Protein JAO00625 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012924979   ⟸   XM_013069525
- UniProtKB: A0A0P6JAW1 (UniProtKB/TrEMBL),   G5BQF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004875461   ⟸   XM_004875404
- UniProtKB: A0A0P6JAW1 (UniProtKB/TrEMBL),   G5BQF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004875462   ⟸   XM_004875405
- UniProtKB: A0A0P6JAW1 (UniProtKB/TrEMBL),   G5BQF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004875463   ⟸   XM_004875406
- UniProtKB: A0A0P6JAW1 (UniProtKB/TrEMBL),   G5BQF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000000143   ⟸   ENSHGLT00000000173


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000162 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000000173 ENTREZGENE
InterPro ELMO_dom UniProtKB/TrEMBL
KEGG Report hgl:101722927 UniProtKB/TrEMBL
NCBI Gene Elmod2 ENTREZGENE
PANTHER ENGULFMENT AND CELL MOTILITY UniProtKB/TrEMBL
  PTHR12771:SF47 UniProtKB/TrEMBL
Pfam ELMO_CED12 UniProtKB/TrEMBL
PROSITE ELMO UniProtKB/TrEMBL
UniProt A0A0P6JAW1 ENTREZGENE, UniProtKB/TrEMBL
  G5BQF4 ENTREZGENE, UniProtKB/TrEMBL