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Gene: Yeats2 (YEATS domain containing 2) Rattus norvegicus

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Symbol:

Yeats2

Name:

YEATS domain containing 2

RGD ID:

1566176

Description:

Predicted to enable several functions, including TBP-class protein binding activity; histone binding activity; and transcription corepressor activity. Predicted to be involved in several processes, including negative regulation of transcription by RNA polymerase II; regulation of cell division; and regulation of embryonic development. Predicted to be located in mitotic spindle. Predicted to be part of ATAC complex and NuA4 histone acetyltransferase complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 4. Orthologous to human YEATS2 (YEATS domain containing 2); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; all-trans-retinoic acid; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC498112; RGD1566176; similar to YEATS domain containing 2; YEATS domain-containing protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	YEATS2 (YEATS domain containing 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Yeats2 (YEATS domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Yeats2 (YEATS domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	YEATS2 (YEATS domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	YEATS2 (YEATS domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Yeats2 (YEATS domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	YEATS2 (YEATS domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	YEATS2 (YEATS domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Yeats2 (YEATS domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Yeats2 (YEATS domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EP400 (E1A binding protein p400)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Yeats2 (YEATS domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	YEATS2 (YEATS domain containing 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	yeats2 (YEATS domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	D12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	D12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SAS5	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	TAF14	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	yeats2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	yeats2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	94,247,538 - 94,333,652 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	94,247,538 - 94,333,292 (-)	Ensembl				GRCr8
mRatBN7.2	11	80,743,134 - 80,829,253 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	80,743,134 - 80,829,208 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	89,462,436 - 89,536,804 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	82,115,772 - 82,190,152 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	81,176,915 - 81,251,288 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	84,330,064 - 84,595,296 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	84,330,064 - 84,583,542 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	87,394,894 - 87,657,398 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	82,990,683 - 83,064,723 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	79,578,513 - 79,652,095 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast ductal carcinoma (ISO)

Disease Progression (ISO)

familial adult myoclonic epilepsy (ISO)

familial adult myoclonic epilepsy 4 (ISO)

invasive ductal carcinoma (ISO)

pancreatic ductal carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (EXP)

amphetamine (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chloroacetaldehyde (ISO)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clodronic acid (ISO)

cobalt dichloride (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

dimethyl sulfoxide (ISO)

dioxygen (ISO)

enzyme inhibitor (ISO)

ferroheme b (ISO)

folic acid (ISO)

FR900359 (ISO)

GSK-J4 (ISO)

heme b (ISO)

hydrogen peroxide (ISO)

ifosfamide (ISO)

kojic acid (ISO)

levonorgestrel (ISO)

methapyrilene (ISO)

pentachlorophenol (ISO)

perfluorohexanesulfonic acid (ISO)

sodium arsenate (ISO)

sunitinib (ISO)

temozolomide (ISO)

testosterone enanthate (ISO)

testosterone undecanoate (ISO)

thapsigargin (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

vinclozolin (EXP)

zinc dichloride (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

chromatin remodeling (IBA)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of cell cycle (IEA,ISO)

regulation of cell division (IEA,ISO)

regulation of DNA-templated transcription (IEA,ISO)

regulation of embryonic development (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

regulation of tubulin deacetylation (ISO)

Cellular Component

ATAC complex (IBA,IEA,ISO)

mitotic spindle (IEA,ISO)

NuA4 histone acetyltransferase complex (IBA)

nucleus (IBA,IEA,ISO)

Molecular Function

histone binding (IBA,IEA,ISO)

histone reader activity (IEA,ISO)

modification-dependent protein binding (IEA,ISO)

protein binding (ISO)

TBP-class protein binding (IEA,ISO)

transcription corepressor activity (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription initiation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation
6.	ATAC-king the complexity of SAGA during evolution.	Spedale G, etal., Genes Dev. 2012 Mar 15;26(6):527-41. doi: 10.1101/gad.184705.111.

Additional References at PubMed

PMID:18838386	PMID:20508642	PMID:20562830	PMID:27103431

Genomics

Comparative Map Data

Yeats2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	94,247,538 - 94,333,652 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	94,247,538 - 94,333,292 (-)	Ensembl				GRCr8
mRatBN7.2	11	80,743,134 - 80,829,253 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	80,743,134 - 80,829,208 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	89,462,436 - 89,536,804 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	82,115,772 - 82,190,152 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	81,176,915 - 81,251,288 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	84,330,064 - 84,595,296 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	84,330,064 - 84,583,542 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	87,394,894 - 87,657,398 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	82,990,683 - 83,064,723 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	79,578,513 - 79,652,095 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

YEATS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	183,697,797 - 183,812,624 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	183,697,748 - 183,812,805 (+)	Ensembl			hg38	GRCh38
GRCh37	3	183,415,585 - 183,530,412 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	184,898,300 - 185,013,102 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	184,898,307 - 185,013,110	NCBI
Celera	3	181,858,780 - 181,973,588 (+)	NCBI		Celera
Cytogenetic Map	3	q27.1	NCBI
HuRef	3	180,824,952 - 180,939,657 (+)	NCBI		HuRef
CHM1_1	3	183,380,010 - 183,494,763 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	186,507,277 - 186,622,124 (+)	NCBI		T2T-CHM13v2.0

Yeats2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	19,959,803 - 20,051,323 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	19,959,813 - 20,051,323 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	20,141,053 - 20,232,573 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	20,141,063 - 20,232,573 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	20,141,136 - 20,232,646 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	20,054,651 - 20,146,116 (+)	NCBI		MGSCv36	mm8
Celera	16	20,704,633 - 20,796,345 (+)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	12.37	NCBI

Yeats2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	23,589,071 - 23,666,680 (-)	Ensembl
ChiLan1.0	NW_004955420	23,590,636 - 23,666,689 (-)	NCBI	ChiLan1.0	ChiLan1.0

YEATS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	181,572,252 - 181,684,641 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	181,576,983 - 181,689,357 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	180,736,213 - 180,847,545 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	188,903,750 - 189,014,379 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	188,903,615 - 189,016,942 (+)	Ensembl			panPan2	panpan1.1

YEATS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	16,654,672 - 16,777,493 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	16,654,493 - 16,777,506 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	20,742,441 - 20,864,885 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	16,562,072 - 16,684,777 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	16,562,037 - 16,684,774 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	16,600,793 - 16,723,030 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	16,587,662 - 16,718,692 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	16,826,018 - 16,948,309 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Yeats2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	119,912,573 - 119,996,022 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936578	6,006,018 - 6,075,449 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936578	6,004,427 - 6,075,414 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YEATS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	121,637,874 - 121,746,122 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	121,637,823 - 121,746,131 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	131,074,718 - 131,182,201 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

YEATS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	5,607,788 - 5,716,245 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	5,608,775 - 5,700,620 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	14,390,852 - 14,498,807 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Yeats2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	72,693,218 - 72,781,276 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	72,693,216 - 72,781,611 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Yeats2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	4,949,910 - 5,032,365 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	212
Count of miRNA genes:	152
Interacting mature miRNAs:	187
Transcripts:	ENSRNOT00000064212
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70208	Niddm22	Non-insulin dependent diabetes mellitus QTL 22	3.61		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	73308487	96070872	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	58928336	99753367	Rat
1549848	Bvd6	Brain ventricular dilatation QTL 6	3.1	0.0001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	79618519	99753367	Rat
10450831	Scl80	Serum cholesterol level QTL 80	4.7	0.01	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	11	90461781	96556255	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	73850894	99753367	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	54415391	96071021	Rat
1354656	Bvd3	Brain ventricular dilatation QTL 3	3.64	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	82951028	96351019	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	57754837	96071021	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	67962184	99753367	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	68599321	96497754	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	69855943	99753367	Rat
631506	Bp104	Blood pressure QTL 104	2.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	73308315	99753367	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	51071021	96071021	Rat

Markers in Region

D11Uwm1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	80,624,558 - 80,624,732 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	84,548,525 - 84,548,698	NCBI	Rnor6.0
Rnor_5.0	11	87,612,001 - 87,612,174	UniSTS	Rnor5.0
RGSC_v3.4	11	82,869,039 - 82,869,212	UniSTS	RGSC3.4
Celera	11	79,464,858 - 79,465,021	UniSTS
Cytogenetic Map	11	q23	UniSTS

RH132726

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	80,743,375 - 80,743,579 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	84,330,306 - 84,330,509	NCBI	Rnor6.0
Rnor_5.0	11	87,395,136 - 87,395,339	UniSTS	Rnor5.0
RGSC_v3.4	11	82,990,925 - 82,991,128	UniSTS	RGSC3.4
Celera	11	79,578,755 - 79,578,958	UniSTS
RH 3.4 Map	11	669.7	UniSTS
Cytogenetic Map	11	q23	UniSTS

RH132703

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	80,743,375 - 80,743,570 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	84,330,306 - 84,330,500	NCBI	Rnor6.0
Rnor_5.0	11	87,395,136 - 87,395,330	UniSTS	Rnor5.0
RGSC_v3.4	11	82,990,925 - 82,991,119	UniSTS	RGSC3.4
Celera	11	79,578,755 - 79,578,949	UniSTS
RH 3.4 Map	11	669.7	UniSTS
Cytogenetic Map	11	q23	UniSTS

RH143810

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	80,506,031 - 80,506,296 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	84,428,176 - 84,428,440	NCBI	Rnor6.0
Rnor_5.0	11	87,493,015 - 87,493,279	UniSTS	Rnor5.0
RGSC_v3.4	11	82,746,829 - 82,747,093	UniSTS	RGSC3.4
Celera	11	79,346,070 - 79,346,334	UniSTS
RH 3.4 Map	11	657.9	UniSTS
Cytogenetic Map	11	q23	UniSTS

AI555746

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	80,566,968 - 80,567,171 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	84,489,927 - 84,490,129	NCBI	Rnor6.0
Rnor_5.0	11	87,554,233 - 87,554,435	UniSTS	Rnor5.0
RGSC_v3.4	11	82,809,070 - 82,809,272	UniSTS	RGSC3.4
Celera	11	79,406,937 - 79,407,139	UniSTS
RH 3.4 Map	11	658.0	UniSTS
Cytogenetic Map	11	q23	UniSTS

AU047088

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	11	94,128,821 - 94,128,993 (+)	Marker Load Pipeline
mRatBN7.2	11	80,624,412 - 80,624,584 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	84,548,379 - 84,548,550	NCBI	Rnor6.0
Rnor_5.0	11	87,611,855 - 87,612,026	UniSTS	Rnor5.0
RGSC_v3.4	11	82,868,893 - 82,869,064	UniSTS	RGSC3.4
Celera	11	79,464,710 - 79,464,883	UniSTS
Cytogenetic Map	11	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064212 ⟹ ENSRNOP00000062371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	94,247,538 - 94,321,641 (-)	Ensembl
mRatBN7.2 Ensembl	11	80,743,201 - 80,829,208 (-)	Ensembl
Rnor_6.0 Ensembl	11	84,330,064 - 84,583,542 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112615 ⟹ ENSRNOP00000080576

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	94,247,538 - 94,333,292 (-)	Ensembl
mRatBN7.2 Ensembl	11	80,743,134 - 80,817,119 (-)	Ensembl

RefSeq Acc Id:

NM_001109057 ⟹ NP_001102527

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	94,247,538 - 94,321,641 (-)	NCBI
mRatBN7.2	11	80,743,134 - 80,817,238 (-)	NCBI
Rnor_6.0	11	84,330,064 - 84,583,542 (-)	NCBI
Rnor_5.0	11	87,394,894 - 87,657,398 (-)	NCBI
RGSC_v3.4	11	82,990,683 - 83,064,723 (-)	RGD
Celera	11	79,578,513 - 79,652,095 (-)	RGD

Sequence:

show sequence

TGAACAGTTGAGTCGCACCATGTCTGGAATCAAGCGCACAATCAAAGAAACTGACCCTGATTAT
GAGGATGTGTCTGTGGCCCTGCCAAGTAAACGGCACAAAGCGATTGAGAGCTCAGCTCGAGATG
CAGCTGTGCAGAAAATTGAGACGATTATTAAGGAGCAGTTTGCCCTTGAAATGAAGAATAAGGA
ACATGAGATTGATGTCATTGACCAGCGGCTGATTGAAGCCAGAAGGATGATGGATAAGCTCCGA
GCCTGCATTGTAGCAAACTATTATGCATCGGCTGGTCTCCTGAAGGTTTCTGAGGGATTAAAGA
CATTTGATCCCATGGCTTTTAACCACCCTGCTATCAAGAAATTTTTGGAATCACCTTCTAGGTC
ATCGTCTCCTACTAATCAGAGATCAGAAACACCATCTGCCAATCACTCTGAAAGTGACTCTTTA
TCTCAGCACAATGACTTCCTATCTGACAAAGACAATAACAGCAACGTGGATGTGGAGGAAAGGC
TCTCAAGCATCGGGGAGCAGAGACTGAGCCGGAACACGGGAAGGGACACGTCTAGTATTAGTGG
CTCCCACAAACGAGAACTACGGAGCGCCGACCTCGCAGGAGATGAGACTTCCCGACTGTTCGTA
AAGAAGACAATAGTAGTCGGCAACGTGTCCAAGTACATACCTCCAGACAAGCGAGAAGAAAATG
ACCAGTCAACCCATAAGTGGATGGTGTATGTCCGAGGGTCGCGCAGGGAGCCCAGCATTAACCA
CTTTGTCAAGAAAGTTTGGTTCTTCCTTCATCCGAGCTACAAACCAAATGACCTCGTGGAAGTT
AGAGAGCCCCCCTTTCACCTGACTAGAAGAGGCTGGGGAGAGTTTCCTGTCAGAGTGCAAGTTC
ACTTTAAGGACAGCCAGAACAAGCGGATAGATATCATACACAATCTGAAGCTGGATAGGACCTA
CACTGGCTTGCAGACCCTGGGCGCCGAGACGGTAGTGGATGTTGAGCTTCATCGGCACTCGCTC
GGCGAGGACTACGTGTATCCTCAGTCATCGGAATCGGACATCTCGGACGCCCCTCCTCCATCCC
TGACGATTCCAGCCCCAGTGAAAGCCTCACCAGTGGCACGGTCCCCTGAGCCAGCATCTGCTGC
CCCTGTGGGAGAAGGGTTCCCAGACAGTACTGAAGCCGAGAGACACAGCACATTGTATTCCTTA
CCGTCGTCCTTGGAGAGAACACCCACTAAAGTGACAGCAGCACAGAAGGTCACCTTCAGTTCAC
ATGGCAATTCTGCCTTCCAGCCCATCGCATCGAGCTGCAAAATTGTGCCACAAAGTCAGGTGCC
TAATCCTGAGTCACCCGGCAAGTCCTTTCAGCCCATCACCATGAGCTGTAAGATCGTCTCAGGT
TCTCCAATATCAACTCCAAGTCCATCACCACTGCCTCGCACACCAACTTCCACTCCGGTTCATT
TGAAGCAAGGCTCTGCCAGTGCTGGTATCAGCAACCCCCATGCTATTGTGGATAAGCCTGGGCA
GGCTACTGGAGCCTCCGCCCCGAGTGCAGGAAGTCCTACAAGCAAGCTTCCAGTGGCTTCTCAG
GCTTCCCAGGGAACAGGGTCCCCTGTTCCTAAAATCCATGGAAGTAGTTTCCTGACATCCACTG
TGAAGCAGGAGGATTCTTTATTTGCATCTATGCCACCTCTTTGCCCAATTGGTAGTCACCCTAA
AGTGCAGAGCCCAAAAGCTGTTACTGGAGGACTTGGAGCTTTCACAAAGGTGATCATCAAACAG
GAACCTGGAGAAACTCCTCACGTGTCCACAACAGGCGCTGCCAACCAGTCAGCATTCCCTCAGT
ATGTGACTGTGAAGGGGGGTCACATGATCGCTGTGTCCCCTCAAAAACAGGTCCTAAGTGCTGG
AGAAGGGATAACTCAGTCTCCAAAGATTCCACCCTCCAAGGTTGTTGGTGTGCCTGTTGGCTCT
GCCTTACCTTCCACAGTGAAGCAGGCTGTGGCAATCAGTAGTGGCCAAATCCTTGTCGCCAAGG
CCAGCTCTTCCATCACCAAAGCTGTTGGTCCAAAACAAGTTGTGACCCAAGGAGTTGCCAAAGC
AATCGTGAGTGGAGGTGGAGGGACCATTGTTGCTCAGCCAGTACAGACCTTAACCAAGACTCAG
GTCACAGCTGCTGGGCCTCCGAAGACTGGCTCGCAGGGCTCAGTAATGGCGACCTTGCAACTCC
CAGCCACTAATTTGGCCAACTTGGCAAACCTGCCCCCGGGCACTAAGCTGTACCTCACCACGAA
CAGCAAGAACCCCTCAGGGAAAGGGAAGCTGCTGCTGATTCCTCAGGGAGCCATCCTGCGAGCC
ACCAACAACGCCAACCTCCAGTCTGGCTCGGCGGCTGCTGGTGGCAGTGGCGGCAGCTGTGGTG
CAGGGGGAGGCGGTGGTGGTGGTGGAGGAGCAGGAGGAGCCCCGAGTACCTCTGGCCCAGGAGG
GGGGCCCCAGCACCTGACTTACACATCCTACATCCTCAAGCAAACCCCCCAGGGTACATTTTTA
GTTGGCCAACCATCACCCCAAACACCTGGAAAACAGCTGACGACAGCTTCAGTTGTTCAAGGAA
CACTGGGAGTCAGCACATCGTCTGCACCGGGACAGCAGACGCTGAAAGTTATCTCTGGACAGAA
AACCACTCTGTTTACACAGGCAGCCACTGCGGGGCAGGCATCGCTGCTGAAGTTACCTGACAAC
ACCCTCAAGTCTGTGCCAGCGGCGCCACAGCTCGCCAAGCCGGGGACCACGATGCTGCGAGTGG
CAGGGGGCGTGATCACAGCTGCCCCCTCCCCTGCCGTGGCTTTCTCAGCGAACGGTGCTGTACA
CCAGGCTGAAGGATCAGCCCCTGTGTCCTCCTCGGTTGGTTCTATAATCAAAACTCCTGGGCAG
CCACAAGTGTGTGTAAGCCAGGCTACCATGGCGACCTGCAAGGCCACAGCTCCTGCTGCCGTCA
CTGCCGCGTCCCTGGTCTCTGCACCAAGCTCCATCTCTGGGAAAGCCACAGTGTCAGGATTGTT
AAAAATTCATTCCGGTCAGTGCAGTCCCCAGCAGGCGGTCCTGACAATTCCCAGTCAACTCAAG
CCACTGAGTATCAACACCTCTGGTGGCGTGCAGACTGTCCTGATGCCTGTGAATAAAGTGGTTC
AGTCATTTTCTACCAGCAAATTACCTACCGTCCTGCCCATAAGTGTTCCAAATCCCGCTGCCCC
CAGCCCTGCTCCAGTAACAATCGCAAAAGTGAAGACGGAACCAGAGACTCCTGGGCCAAACTGC
GTCTCACAGGAGACCCAGATAGCAGTAAAAACCGAAGAGAGCTCTGAGCTAAGCAACTACGTCA
TTCAGGTCGACCATTTGGAGACTATCCAGCAGCTCTTGACAGCAGTAGTGAAGAAGATCCCGTT
AATTACTGCGAAAGGTAATGATACCAGCTGTTTTTCTGCCAAGTCCTTGGAGCAGTACTACGGC
TGGAACATTGGCAAAAGGAGGGCTGCTGAGTGGCAAAGAGCGATGACCGTAAGGAAAGTGTTAC
AAGAAATCCTGGAGCGGAATCCAAGGTTCCACCACCTGACAGCCCTCAAAACCAAGCACATCGC
GCACTGGTGCCGCTGCCATGGTTACACCCCGCCAGACCCCGAGAGCCTGCGACATAATGGAGAC
TCCATCGAGGATGTGCTGACCCAGATCGACAGTGAACCAGAGTGTCTGTCGTCCTTCTCCACTG
CCGATGACCTCTGCCGAAAGCTGGAGGACCTGCAGCAGTTTCAGAAAAGGGAGCCTGAGAATGA
GGAGGAAGTGGATATCCTCAGTCTGTCTGAGCCTCTGAAGACAAACATTAAAAAGGAGCAGGAA
GAAAAGCAGGAGGAAATGAGATTCTATCTGCCACCAACCCCAGGCTCTGGATTTGTTGGTGACA
TTACACAGAAGATCGGGATCACCTTGCAGCCTGTGGCACTGCACAGGAACATGTATGCCTCAGT
AGTAGAAGACATGATCTTAAAGGCCACGGAGCAGCTGGTGAGTGACATCCTGAGACAGGCCCTG
GCAGTTGGATACCAGACAGCATCTCCCAACAGGATTCCCAAAGAAATTACAGTGAGTAATATTC
ATCAGGCCATTTGCAACATTCCTTTTCTGGATTTTCTCACGAACAAACACATGGGGAGACTGAA
CGAGGATCAGTGAGTATCGTGAAGAGATCCCGGAAAGCAGGATGGAAGCTGTGTCTAGAGTGTG
CAGACTGTGACCTCGTGTTTGGAGAGGCTGGTGTTCTCTGTTGGAATGCCATGGCTGCCAGACT
TCCTTCCGTCTAACTGCAGGTTACACAGGGCCCCAGGTGCCCGCCTTTGAAGACACAGTTGTCC
CCCCATTCTGGAGGGAAGCTGAATGGACACACATGGCTTTGTCAGTTTGCATTTCTTTACTCTG
ACCAGGCTCTGCAGGGCCTTGGTGTGAGGCAGGCACATACACAGGGTGCTTGCTCCCTCTGTGG
ACTGTGCTTGGGTTCACCTTTGGCCTGCTTTTCAGAAGGCAAAAATAAGCCCAGCATGCGGGGC
TGGGGAACTCTAAAGAAGAACAGAGCAAGCAAGCACCTCCTCCCACCGTTCTTCAGCGTAGAAG
GGGTGGCTCACTCTCGGCCGGTGTAAGTCAGCTATGGTGAGGGTAATACGCCATGTGGGAAACC
TGAGGCCAAGAAGGCTACAACAAGACTCTTACAGAACCATGACACTAATGCTGCGACGGCCTGT
TGAGGGGTCCCAGCAGAGCTCAGAAGGCATCAGACCTGTGCCCGTGTAAGCCAGGAACTACAAG
TATTAGTGTAGGTACCAACCTCAAAGTCAGGCACTTGAGCCGTGTGTGGGTCCTTCTGTTCGCG
TGGGCTTCAGAAGCTGCTGCCGCCTCATGTCAAGGGGAGGGAGGCAGCCCCAGTGCAAACCTTA
CTAGGATTGTCGTCTTGGTGGACTGGAGTCCTGTCCTTCTCTGCCAAAGAGTTTTACCAAGATG
AAAAGGGTTGAACACCTGCGAGTGCCTTACCATGAGAGAGAACTTCTCCAACCCAGTGTGCTAA
TGCTCGGAGGCACCGGAGACTCTCCAGTCCTCCTAACTGTTACGGGGCACAGGAAAGACCTTCG
TCTCAGTTGTAAACCTGCTCTTTCTCTACTCAAAGGAAACTTGAAATATCCCAGTAAAAGTCAA
AGAACCTTACCTAAGCACCATAAAGCCTGTTCTCTCAGGTCCTGTAGGTAGATGTGTGAGTCAG
GAACTGCTGCAGGAAGGATATATCTTTAATTCAGCACCTGAGAGCTGCAGGTGAGAAGGGATCT
ACCGTGCAGGGATTGGGCAAGCATAGCTTACTGGTACAGTTGGGTATAGAAGGCTTAAGAATTT
GGTCCATGTAGCAGGTCGATAGGCTGACACACATCTGTTCAGAAGTGGACATGGTAGAAATCCC
ACTAAGAGCAGATTCATTTGTTGTGATGAAAACCTAAAGAAATTACTTTTTTGCTAAAAAAAAA
AAAAATGATTTAACAGTTTCTGTGTATGTAAAAGTTTCAAGTGTTTTTTAAAATCATAATGTGT
AATAATTGTGTACCATTTTGTCTACAATAAAACGTTTAGTATTTGCAATGGGTTTTCTGAGCTG
GAAGCACCATACTTAGAGGGGCTCATTGGGACGCGGCCGTGGTCTAGGTCT

hide sequence

RefSeq Acc Id:

XM_063270709 ⟹ XP_063126779

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	94,247,605 - 94,333,242 (-)	NCBI

RefSeq Acc Id:

XM_063270710 ⟹ XP_063126780

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	94,247,605 - 94,333,652 (-)	NCBI

RefSeq Acc Id:

XM_063270711 ⟹ XP_063126781

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	94,247,605 - 94,333,248 (-)	NCBI

RefSeq Acc Id:

XM_063270712 ⟹ XP_063126782

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	94,247,605 - 94,333,243 (-)	NCBI

RefSeq Acc Id:

XM_063270713 ⟹ XP_063126783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	94,247,605 - 94,333,652 (-)	NCBI

RefSeq Acc Id:

XM_063270714 ⟹ XP_063126784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	94,247,605 - 94,321,358 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102527	(Get FASTA)	NCBI Sequence Viewer
	NP_001418610	(Get FASTA)	NCBI Sequence Viewer
	XP_063126779	(Get FASTA)	NCBI Sequence Viewer
	XP_063126780	(Get FASTA)	NCBI Sequence Viewer
	XP_063126781	(Get FASTA)	NCBI Sequence Viewer
	XP_063126782	(Get FASTA)	NCBI Sequence Viewer
	XP_063126783	(Get FASTA)	NCBI Sequence Viewer
	XP_063126784	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL77987	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062371
	ENSRNOP00000062371.3
	ENSRNOP00000080576
	ENSRNOP00000080576.1

RefSeq Acc Id:

NP_001102527 ⟸ NM_001109057

- UniProtKB:

D3ZBV9 (UniProtKB/TrEMBL), A6JSC0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGIKRTIKETDPDYEDVSVALPSKRHKAIESSARDAAVQKIETIIKEQFALEMKNKEHEIDVI
DQRLIEARRMMDKLRACIVANYYASAGLLKVSEGLKTFDPMAFNHPAIKKFLESPSRSSSPTNQ
RSETPSANHSESDSLSQHNDFLSDKDNNSNVDVEERLSSIGEQRLSRNTGRDTSSISGSHKREL
RSADLAGDETSRLFVKKTIVVGNVSKYIPPDKREENDQSTHKWMVYVRGSRREPSINHFVKKVW
FFLHPSYKPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKRIDIIHNLKLDRTYTGLQTL
GAETVVDVELHRHSLGEDYVYPQSSESDISDAPPPSLTIPAPVKASPVARSPEPASAAPVGEGF
PDSTEAERHSTLYSLPSSLERTPTKVTAAQKVTFSSHGNSAFQPIASSCKIVPQSQVPNPESPG
KSFQPITMSCKIVSGSPISTPSPSPLPRTPTSTPVHLKQGSASAGISNPHAIVDKPGQATGASA
PSAGSPTSKLPVASQASQGTGSPVPKIHGSSFLTSTVKQEDSLFASMPPLCPIGSHPKVQSPKA
VTGGLGAFTKVIIKQEPGETPHVSTTGAANQSAFPQYVTVKGGHMIAVSPQKQVLSAGEGITQS
PKIPPSKVVGVPVGSALPSTVKQAVAISSGQILVAKASSSITKAVGPKQVVTQGVAKAIVSGGG
GTIVAQPVQTLTKTQVTAAGPPKTGSQGSVMATLQLPATNLANLANLPPGTKLYLTTNSKNPSG
KGKLLLIPQGAILRATNNANLQSGSAAAGGSGGSCGAGGGGGGGGGAGGAPSTSGPGGGPQHLT
YTSYILKQTPQGTFLVGQPSPQTPGKQLTTASVVQGTLGVSTSSAPGQQTLKVISGQKTTLFTQ
AATAGQASLLKLPDNTLKSVPAAPQLAKPGTTMLRVAGGVITAAPSPAVAFSANGAVHQAEGSA
PVSSSVGSIIKTPGQPQVCVSQATMATCKATAPAAVTAASLVSAPSSISGKATVSGLLKIHSGQ
CSPQQAVLTIPSQLKPLSINTSGGVQTVLMPVNKVVQSFSTSKLPTVLPISVPNPAAPSPAPVT
IAKVKTEPETPGPNCVSQETQIAVKTEESSELSNYVIQVDHLETIQQLLTAVVKKIPLITAKGN
DTSCFSAKSLEQYYGWNIGKRRAAEWQRAMTVRKVLQEILERNPRFHHLTALKTKHIAHWCRCH
GYTPPDPESLRHNGDSIEDVLTQIDSEPECLSSFSTADDLCRKLEDLQQFQKREPENEEEVDIL
SLSEPLKTNIKKEQEEKQEEMRFYLPPTPGSGFVGDITQKIGITLQPVALHRNMYASVVEDMIL
KATEQLVSDILRQALAVGYQTASPNRIPKEITVSNIHQAICNIPFLDFLTNKHMGRLNEDQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000062371 ⟸ ENSRNOT00000064212

Ensembl Acc Id:

ENSRNOP00000080576 ⟸ ENSRNOT00000112615

RefSeq Acc Id:	XP_063126783 ⟸ XM_063270713
- Peptide Label:	isoform X3
- UniProtKB:	D3ZBV9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126780 ⟸ XM_063270710
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063126781 ⟸ XM_063270711
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZPX3 (UniProtKB/TrEMBL), D3ZBV9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126782 ⟸ XM_063270712
- Peptide Label:	isoform X3
- UniProtKB:	D3ZBV9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126779 ⟸ XM_063270709
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063126784 ⟸ XM_063270714
- Peptide Label:	isoform X3
- UniProtKB:	D3ZBV9 (UniProtKB/TrEMBL)

Protein Domains

YEATS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZBV9-F1-model_v2	AlphaFold	D3ZBV9	1-1405	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566176	AgrOrtholog
BioCyc Gene	G2FUF-20712	BioCyc
Ensembl Genes	ENSRNOG00000023107	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064212	ENTREZGENE
	ENSRNOT00000064212.3	UniProtKB/TrEMBL
	ENSRNOT00000112615	ENTREZGENE
	ENSRNOT00000112615.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.1970	UniProtKB/TrEMBL
InterPro	YEAST_sf	UniProtKB/TrEMBL
	YEATS	UniProtKB/TrEMBL
	YEATS2_3HBD	UniProtKB/TrEMBL
	YEATS_dom	UniProtKB/TrEMBL
KEGG Report	rno:498112	UniProtKB/TrEMBL
NCBI Gene	498112	ENTREZGENE
PANTHER	YEATS	UniProtKB/TrEMBL
Pfam	3HBD	UniProtKB/TrEMBL
	YEATS	UniProtKB/TrEMBL
PhenoGen	Yeats2	PhenoGen
PROSITE	YEATS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000023107	RatGTEx
UniProt	A0A8I5ZPX3	ENTREZGENE, UniProtKB/TrEMBL
	A6JSC0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZBV9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Yeats2	YEATS domain containing 2	RGD1566176_predicted	similar to YEATS domain containing 2 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1566176_predicted	similar to YEATS domain containing 2 (predicted)	LOC498112	similar to YEATS domain containing 2	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498112	similar to YEATS domain containing 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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RGD Manual Annotations