Pbrm1 (polybromo 1) - Rat Genome Database

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Gene: Pbrm1 (polybromo 1) Rattus norvegicus
Analyze
Symbol: Pbrm1
Name: polybromo 1
RGD ID: 1565549
Description: Predicted to enable chromatin binding activity. Involved in positive regulation of dendritic spine development. Predicted to be located in kinetochore and nucleus. Predicted to be part of RSC-type complex and SWI/SNF complex. Human ortholog(s) of this gene implicated in extrahepatic bile duct adenocarcinoma; lung non-small cell carcinoma; lung small cell carcinoma; and renal cell carcinoma. Orthologous to human PBRM1 (polybromo 1); PARTICIPATES IN altered SWI/SNF family mediated chromatin remodeling pathway; histone modification pathway; pancreatic cancer pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306254; RGD1565549; similar to polybromo-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,219,933 - 6,319,336 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl166,219,917 - 6,319,336 (+)EnsemblGRCr8
mRatBN7.2166,213,507 - 6,312,895 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,213,300 - 6,311,780 (+)EnsemblmRatBN7.2
Rnor_6.0167,103,714 - 7,202,899 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,103,998 - 7,200,362 (+)Ensemblrn6Rnor6.0
Rnor_5.0167,032,357 - 7,131,462 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4166,456,202 - 6,550,030 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera168,876,544 - 8,975,777 (-)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
chlorpyrifos  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
finasteride  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP,ISO)
riddelliine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulindac  (EXP)
sunitinib  (ISO)
theophylline  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
kinetochore  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA,ISO)
RSC-type complex  (IBA,IEA)
SWI/SNF complex  (IBA,ISO)

Molecular Function
chromatin binding  (IBA,IEA,ISO)
DNA binding  (IEA)
protein binding  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Genetic pathways involved in carcinogenesis of clear cell renal cell carcinoma: genomics towards personalized medicine. Audenet F, etal., BJU Int. 2012 Jun;109(12):1864-70. doi: 10.1111/j.1464-410X.2011.10661.x. Epub 2011 Oct 28.
2. Mutation profiling in cholangiocarcinoma: prognostic and therapeutic implications. Churi CR, etal., PLoS One. 2014 Dec 23;9(12):e115383. doi: 10.1371/journal.pone.0115383. eCollection 2014.
3. Genomic alterations of plasma cell-free DNAs in small cell lung cancer and their clinical relevance. Du M, etal., Lung Cancer. 2018 Jun;120:113-121. doi: 10.1016/j.lungcan.2018.04.008. Epub 2018 Apr 12.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
6. SWI/SNF chromatin remodeling enzymes are associated with cardiac hypertrophy in a genetic rat model of hypertension. Mehrotra A, etal., J Cell Physiol. 2013 Dec;228(12):2337-42. doi: 10.1002/jcp.24404.
7. Intrahepatic cholangiocarcinoma frequently shows loss of BAP1 and PBRM1 expression, and demonstrates specific clinicopathological and genetic characteristics with BAP1 loss. Misumi K, etal., Histopathology. 2017 Apr;70(5):766-774. doi: 10.1111/his.13127. Epub 2017 Jan 18.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. The bromodomain: From epigenome reader to druggable target. Sanchez R, etal., Biochim Biophys Acta. 2014 Aug;1839(8):676-685. doi: 10.1016/j.bbagrm.2014.03.011. Epub 2014 Mar 28.
13. The spectrum of SWI/SNF mutations, ubiquitous in human cancers. Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.
14. The epigenetic modifier PBRM1 restricts the basal activity of the innate immune system by repressing retinoic acid-inducible gene-I-like receptor signalling and is a potential prognostic biomarker for colon cancer. Shu XS, etal., J Pathol. 2018 Jan;244(1):36-48. doi: 10.1002/path.4986. Epub 2017 Nov 27.
15. SWI/SNF nucleosome remodellers and cancer. Wilson BG and Roberts CW, Nat Rev Cancer. 2011 Jun 9;11(7):481-92. doi: 10.1038/nrc3068.
16. The genome-wide risk alleles for psychiatric disorders at 3p21.1 show convergent effects on mRNA expression, cognitive function, and mushroom dendritic spine. Yang Z, etal., Mol Psychiatry. 2020 Jan;25(1):48-66. doi: 10.1038/s41380-019-0592-0. Epub 2019 Nov 13.
17. PBRM1 mutation and preliminary response to immune checkpoint blockade treatment in non-small cell lung cancer. Zhou H, etal., NPJ Precis Oncol. 2020 Mar 16;4:6. doi: 10.1038/s41698-020-0112-3. eCollection 2020.
Additional References at PubMed
PMID:14519686   PMID:15601824   PMID:21248752   PMID:24335282   PMID:27869233  


Genomics

Comparative Map Data
Pbrm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,219,933 - 6,319,336 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl166,219,917 - 6,319,336 (+)EnsemblGRCr8
mRatBN7.2166,213,507 - 6,312,895 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,213,300 - 6,311,780 (+)EnsemblmRatBN7.2
Rnor_6.0167,103,714 - 7,202,899 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,103,998 - 7,200,362 (+)Ensemblrn6Rnor6.0
Rnor_5.0167,032,357 - 7,131,462 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4166,456,202 - 6,550,030 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera168,876,544 - 8,975,777 (-)NCBICelera
Cytogenetic Map16p16NCBI
PBRM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,545,367 - 52,685,913 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,544,735 - 52,685,966 (-)Ensemblhg38GRCh38
GRCh37352,579,383 - 52,719,929 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,554,423 - 52,694,892 (-)NCBIBuild 36Build 36hg18NCBI36
Celera352,558,739 - 52,698,578 (-)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,641,983 - 52,781,706 (-)NCBIHuRef
CHM1_1352,531,687 - 52,671,935 (-)NCBICHM1_1
T2T-CHM13v2.0352,578,272 - 52,718,824 (-)NCBIT2T-CHM13v2.0
Pbrm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,741,095 - 30,843,549 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,741,095 - 30,843,549 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381431,019,138 - 31,121,592 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,019,138 - 31,121,592 (+)Ensemblmm10GRCm38
MGSCv371431,832,324 - 31,934,778 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361429,848,147 - 29,950,601 (+)NCBIMGSCv36mm8
Celera1427,276,955 - 27,380,012 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.09NCBI
Pbrm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554302,536,086 - 2,670,617 (-)Ensembl
ChiLan1.0NW_0049554302,536,086 - 2,671,094 (-)NCBIChiLan1.0ChiLan1.0
PBRM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2252,540,228 - 52,679,579 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1352,545,000 - 52,684,270 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0352,487,083 - 52,626,418 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,715,342 - 53,854,267 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,718,051 - 53,850,146 (-)EnsemblpanPan2panpan1.1
PBRM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,110,437 - 37,231,676 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,110,766 - 37,229,203 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2037,092,491 - 37,213,642 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02037,463,772 - 37,581,266 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,461,244 - 37,579,507 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12036,824,752 - 36,945,835 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,233,387 - 37,354,437 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,510,917 - 37,632,467 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pbrm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118170,244,058 - 170,337,482 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364733,382,260 - 3,476,052 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364733,382,618 - 3,476,049 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PBRM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,689,726 - 34,820,952 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11334,689,718 - 34,821,117 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,897,740 - 38,020,410 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PBRM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,914,023 - 14,059,221 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,913,285 - 14,055,254 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041152,840,917 - 152,986,296 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pbrm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248224,529,007 - 4,663,165 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248224,529,350 - 4,666,714 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pbrm1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1136,719,545 - 6,818,648 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pbrm1
277 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:424
Count of miRNA genes:136
Interacting mature miRNAs:148
Transcripts:ENSRNOT00000016581, ENSRNOT00000016592, ENSRNOT00000016599, ENSRNOT00000017492
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16423421216278352Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1638712345387123Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133425095Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139568015Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16423421253708481Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16474422249744222Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16423421216278352Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16126734272Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126734272Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16435482249354822Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)1638712345387123Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16423421249757901Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421216061395Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139568015Rat
631524Bp75Blood pressure QTL 750.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)161177108157035Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338679049757901Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338679026128267Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126734272Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16423433317730812Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683908652786090Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16330168348301683Rat

Markers in Region
RH132622  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2166,311,662 - 6,311,849 (+)MAPPERmRatBN7.2
Rnor_6.0167,201,667 - 7,201,853NCBIRnor6.0
Rnor_5.0167,130,230 - 7,130,416UniSTSRnor5.0
RGSC_v3.4166,548,798 - 6,548,984UniSTSRGSC3.4
Celera168,877,590 - 8,877,776UniSTS
Cytogenetic Map16p16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC121615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000016581   ⟹   ENSRNOP00000016581
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,220,215 - 6,319,336 (+)Ensembl
mRatBN7.2 Ensembl166,213,792 - 6,310,484 (+)Ensembl
Rnor_6.0 Ensembl167,103,998 - 7,200,362 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094186   ⟹   ENSRNOP00000079535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,219,933 - 6,319,336 (+)Ensembl
mRatBN7.2 Ensembl166,213,836 - 6,311,780 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096494   ⟹   ENSRNOP00000096705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,219,939 - 6,319,336 (+)Ensembl
mRatBN7.2 Ensembl166,213,300 - 6,311,780 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104141   ⟹   ENSRNOP00000092107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,220,215 - 6,319,336 (+)Ensembl
mRatBN7.2 Ensembl166,213,746 - 6,311,780 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109995   ⟹   ENSRNOP00000081368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,220,215 - 6,319,336 (+)Ensembl
mRatBN7.2 Ensembl166,213,820 - 6,311,780 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000136414   ⟹   ENSRNOP00000104472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,219,917 - 6,319,336 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000137529   ⟹   ENSRNOP00000112238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,220,206 - 6,319,336 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000147340   ⟹   ENSRNOP00000106061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl166,220,215 - 6,319,336 (+)Ensembl
RefSeq Acc Id: NM_001427685   ⟹   NP_001414614
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,219,933 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_039095102   ⟹   XP_038951030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
mRatBN7.2166,213,779 - 6,312,895 (+)NCBI
RefSeq Acc Id: XM_063275298   ⟹   XP_063131368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275299   ⟹   XP_063131369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,219,948 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275300   ⟹   XP_063131370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,252 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275301   ⟹   XP_063131371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,219,951 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275302   ⟹   XP_063131372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,219,949 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275303   ⟹   XP_063131373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275304   ⟹   XP_063131374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275305   ⟹   XP_063131375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,219,949 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275306   ⟹   XP_063131376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275307   ⟹   XP_063131377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275308   ⟹   XP_063131378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,219,949 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275309   ⟹   XP_063131379
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275310   ⟹   XP_063131380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275311   ⟹   XP_063131381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275312   ⟹   XP_063131382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275313   ⟹   XP_063131383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275314   ⟹   XP_063131384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275315   ⟹   XP_063131385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,219,948 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275316   ⟹   XP_063131386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275317   ⟹   XP_063131387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,219,948 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275318   ⟹   XP_063131388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275319   ⟹   XP_063131389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275320   ⟹   XP_063131390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275321   ⟹   XP_063131391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275322   ⟹   XP_063131392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275323   ⟹   XP_063131393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275324   ⟹   XP_063131394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275325   ⟹   XP_063131395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275326   ⟹   XP_063131396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275327   ⟹   XP_063131397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275328   ⟹   XP_063131398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275329   ⟹   XP_063131399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275330   ⟹   XP_063131400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275331   ⟹   XP_063131401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275332   ⟹   XP_063131402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275333   ⟹   XP_063131403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275334   ⟹   XP_063131404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275335   ⟹   XP_063131405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275336   ⟹   XP_063131406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275337   ⟹   XP_063131407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275338   ⟹   XP_063131408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,219,956 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275339   ⟹   XP_063131409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275340   ⟹   XP_063131410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275341   ⟹   XP_063131411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275342   ⟹   XP_063131412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275343   ⟹   XP_063131413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275344   ⟹   XP_063131414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275345   ⟹   XP_063131415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
RefSeq Acc Id: XM_063275346   ⟹   XP_063131416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8166,220,189 - 6,319,336 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001414614 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951030 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131368 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131369 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131370 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131371 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131372 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131373 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131374 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131375 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131376 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131377 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131378 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131379 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131380 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131381 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131382 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131383 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131384 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131385 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131386 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131387 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131388 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131389 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131390 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131391 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131392 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131393 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131394 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131395 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131396 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131397 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131398 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131399 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131400 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131401 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131402 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131403 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131404 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131405 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131406 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131407 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131408 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131409 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131410 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131411 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131412 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131413 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131414 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131415 (Get FASTA)   NCBI Sequence Viewer  
  XP_063131416 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016581
  ENSRNOP00000016581.8
  ENSRNOP00000079535
  ENSRNOP00000079535.2
  ENSRNOP00000081368
  ENSRNOP00000081368.1
  ENSRNOP00000092107
  ENSRNOP00000092107.2
  ENSRNOP00000096705
  ENSRNOP00000096705.2
  ENSRNOP00000104472
  ENSRNOP00000104472.1
  ENSRNOP00000106061
  ENSRNOP00000106061.1
  ENSRNOP00000112238
  ENSRNOP00000112238.1
Ensembl Acc Id: ENSRNOP00000016581   ⟸   ENSRNOT00000016581
RefSeq Acc Id: XP_038951030   ⟸   XM_039095102
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096705   ⟸   ENSRNOT00000096494
Ensembl Acc Id: ENSRNOP00000092107   ⟸   ENSRNOT00000104141
Ensembl Acc Id: ENSRNOP00000079535   ⟸   ENSRNOT00000094186
Ensembl Acc Id: ENSRNOP00000081368   ⟸   ENSRNOT00000109995
RefSeq Acc Id: NP_001414614   ⟸   NM_001427685
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131369   ⟸   XM_063275299
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131385   ⟸   XM_063275315
- Peptide Label: isoform X13
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131387   ⟸   XM_063275317
- Peptide Label: isoform X14
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131372   ⟸   XM_063275302
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131375   ⟸   XM_063275305
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131378   ⟸   XM_063275308
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131371   ⟸   XM_063275301
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131408   ⟸   XM_063275338
- Peptide Label: isoform X35
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131368   ⟸   XM_063275298
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131390   ⟸   XM_063275320
- Peptide Label: isoform X17
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131404   ⟸   XM_063275334
- Peptide Label: isoform X31
- UniProtKB: A0A8I6G5U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131376   ⟸   XM_063275306
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131381   ⟸   XM_063275311
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131393   ⟸   XM_063275323
- Peptide Label: isoform X20
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131373   ⟸   XM_063275303
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131380   ⟸   XM_063275310
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131389   ⟸   XM_063275319
- Peptide Label: isoform X16
- UniProtKB: D3ZT52 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131391   ⟸   XM_063275321
- Peptide Label: isoform X18
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131405   ⟸   XM_063275335
- Peptide Label: isoform X32
- UniProtKB: A0A8I6G5U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131406   ⟸   XM_063275336
- Peptide Label: isoform X33
- UniProtKB: A0A8I6G5U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131397   ⟸   XM_063275327
- Peptide Label: isoform X24
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131382   ⟸   XM_063275312
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131395   ⟸   XM_063275325
- Peptide Label: isoform X22
- UniProtKB: D3ZT52 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131398   ⟸   XM_063275328
- Peptide Label: isoform X25
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131409   ⟸   XM_063275339
- Peptide Label: isoform X36
- UniProtKB: A0A8I6G5U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131383   ⟸   XM_063275313
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131396   ⟸   XM_063275326
- Peptide Label: isoform X23
- UniProtKB: D3ZT52 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131399   ⟸   XM_063275329
- Peptide Label: isoform X26
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131410   ⟸   XM_063275340
- Peptide Label: isoform X37
- UniProtKB: A0A8I6G5U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131384   ⟸   XM_063275314
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131386   ⟸   XM_063275316
- Peptide Label: isoform X13
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131413   ⟸   XM_063275343
- Peptide Label: isoform X40
- UniProtKB: A0A8I6G5U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131402   ⟸   XM_063275332
- Peptide Label: isoform X29
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL),   A0A8I6AV81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131388   ⟸   XM_063275318
- Peptide Label: isoform X15
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131403   ⟸   XM_063275333
- Peptide Label: isoform X30
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131416   ⟸   XM_063275346
- Peptide Label: isoform X43
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131415   ⟸   XM_063275345
- Peptide Label: isoform X42
- UniProtKB: A0A8I6G5U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131374   ⟸   XM_063275304
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131377   ⟸   XM_063275307
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131392   ⟸   XM_063275322
- Peptide Label: isoform X19
- UniProtKB: D3ZT52 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131394   ⟸   XM_063275324
- Peptide Label: isoform X21
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131407   ⟸   XM_063275337
- Peptide Label: isoform X34
- UniProtKB: A0A8I6G5U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131400   ⟸   XM_063275330
- Peptide Label: isoform X27
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131411   ⟸   XM_063275341
- Peptide Label: isoform X38
- UniProtKB: A0A8I6G5U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131401   ⟸   XM_063275331
- Peptide Label: isoform X28
- UniProtKB: A0A8I6AR61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131414   ⟸   XM_063275344
- Peptide Label: isoform X41
- UniProtKB: A0A8I6G5U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131379   ⟸   XM_063275309
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131412   ⟸   XM_063275342
- Peptide Label: isoform X39
- UniProtKB: A0A8I6G5U9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131370   ⟸   XM_063275300
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZMW9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000112238   ⟸   ENSRNOT00000137529
Ensembl Acc Id: ENSRNOP00000106061   ⟸   ENSRNOT00000147340
Ensembl Acc Id: ENSRNOP00000104472   ⟸   ENSRNOT00000136414
Protein Domains
BAH   Bromo   HMG box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZT52-F1-model_v2 AlphaFold D3ZT52 1-1726 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699926
Promoter ID:EPDNEW_R10446
Type:initiation region
Name:Pbrm1_1
Description:polybromo 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0167,103,999 - 7,104,059EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565549 AgrOrtholog
BioCyc Gene G2FUF-12163 BioCyc
Ensembl Genes ENSRNOG00000028227 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016581 ENTREZGENE
  ENSRNOT00000016581.10 UniProtKB/TrEMBL
  ENSRNOT00000094186 ENTREZGENE
  ENSRNOT00000094186.2 UniProtKB/TrEMBL
  ENSRNOT00000096494 ENTREZGENE
  ENSRNOT00000096494.2 UniProtKB/TrEMBL
  ENSRNOT00000104141 ENTREZGENE
  ENSRNOT00000104141.2 UniProtKB/TrEMBL
  ENSRNOT00000109995 ENTREZGENE
  ENSRNOT00000109995.2 UniProtKB/TrEMBL
  ENSRNOT00000136414 ENTREZGENE
  ENSRNOT00000136414.1 UniProtKB/TrEMBL
  ENSRNOT00000137529 ENTREZGENE
  ENSRNOT00000137529.1 UniProtKB/TrEMBL
  ENSRNOT00000147340 ENTREZGENE
  ENSRNOT00000147340.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  2.30.30.490 UniProtKB/TrEMBL
InterPro BAH_dom UniProtKB/TrEMBL
  BAH_sf UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  HMG_superfamily UniProtKB/TrEMBL
  PBRM1_BD5 UniProtKB/TrEMBL
  Rsc/polybromo UniProtKB/TrEMBL
NCBI Gene 306254 ENTREZGENE
PANTHER PROTEIN POLYBROMO-1 UniProtKB/TrEMBL
  PTHR16062 UniProtKB/TrEMBL
Pfam BAH UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  HMG_box UniProtKB/TrEMBL
PhenoGen Pbrm1 PhenoGen
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BAH UniProtKB/TrEMBL
  BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  HMG_BOX_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000028227 RatGTEx
SMART BAH UniProtKB/TrEMBL
  BROMO UniProtKB/TrEMBL
  HMG UniProtKB/TrEMBL
Superfamily-SCOP Bromodomain UniProtKB/TrEMBL
  HMG-box UniProtKB/TrEMBL
UniProt A0A8I5ZMW9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AR61 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AV81 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G5U9 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LJ65_RAT UniProtKB/TrEMBL
  A0ABK0LUS1_RAT UniProtKB/TrEMBL
  A0ABK0M2H3_RAT UniProtKB/TrEMBL
  D3ZT52 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Pbrm1  polybromo 1  RGD1565549_predicted  similar to polybromo-1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565549_predicted  similar to polybromo-1 (predicted)  LOC306254  similar to polybromo-1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC306254  similar to polybromo-1      Symbol and Name status set to provisional 70820 PROVISIONAL