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Gene: Zzz3 (zinc finger, ZZ-type containing 3) Rattus norvegicus

Analyze

Symbol:

Zzz3

Name:

zinc finger, ZZ-type containing 3

RGD ID:

1565468

Description:

Predicted to enable histone binding activity. Predicted to be involved in several processes, including regulation of cell division; regulation of embryonic development; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of ATAC complex. Orthologous to human ZZZ3 (zinc finger ZZ-type containing 3); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH bisphenol A; methimazole; oxaliplatin.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC310958; LOC310958; LOC499730; RGD1565468; similar to Zinc finger, ZZ domain containing 3; zinc finger, ZZ domain containing 3; ZZ-type zinc finger-containing protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZZZ3 (zinc finger ZZ-type containing 3)	HGNC	Ensembl, HomoloGene, NCBI, OrthoDB, Panther
Mus musculus (house mouse):	Zzz3 (zinc finger, ZZ domain containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zzz3 (zinc finger ZZ-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZZZ3 (zinc finger ZZ-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZZZ3 (zinc finger ZZ-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zzz3 (zinc finger ZZ-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZZZ3 (zinc finger ZZ-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZZZ3 (zinc finger ZZ-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zzz3 (zinc finger ZZ-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Zzz3 (zinc finger ZZ-type containing 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZZZ3 (zinc finger ZZ-type containing 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZZZ3 (zinc finger ZZ-type containing 3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zzz3 (zinc finger, ZZ domain containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zzz3 (zinc finger, ZZ-type containing 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Atac1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zzz3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	243,990,305 - 244,057,251 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	243,990,289 - 244,056,118 (+)	Ensembl				GRCr8
mRatBN7.2	2	241,330,366 - 241,397,308 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	241,331,022 - 241,397,307 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	249,172,487 - 249,209,719 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	247,059,500 - 247,096,732 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	241,959,040 - 241,996,286 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	257,602,924 - 257,671,783 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	257,626,383 - 257,670,650 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	276,281,516 - 276,349,781 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	250,951,712 - 250,952,232 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	233,291,456 - 233,328,678 (+)	NCBI		Celera
Cytogenetic Map	2	q45	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pancreatic ductal carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amosite asbestos (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

FR900359 (ISO)

geraniol (ISO)

methapyrilene (ISO)

methimazole (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (ISO)

ochratoxin A (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

phenobarbital (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

chromatin organization (IEA,ISO)

regulation of cell cycle (IEA,ISO)

regulation of cell division (IEA,ISO)

regulation of DNA-templated transcription (IEA,ISO)

regulation of embryonic development (IEA,ISO)

regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of tubulin deacetylation (ISO)

Cellular Component

ATAC complex (IEA,ISO)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

SAGA-type complex (IEA)

Molecular Function

histone binding (IEA,ISO)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription initiation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Comprehensive gene review and curation	RGD comprehensive gene curation
4.	ATAC-king the complexity of SAGA during evolution.	Spedale G, etal., Genes Dev. 2012 Mar 15;26(6):527-41. doi: 10.1101/gad.184705.111.

Additional References at PubMed

PMID:20508642	PMID:20562830	PMID:30217978

Genomics

Comparative Map Data

Zzz3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	243,990,305 - 244,057,251 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	243,990,289 - 244,056,118 (+)	Ensembl				GRCr8
mRatBN7.2	2	241,330,366 - 241,397,308 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	241,331,022 - 241,397,307 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	249,172,487 - 249,209,719 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	247,059,500 - 247,096,732 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	241,959,040 - 241,996,286 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	257,602,924 - 257,671,783 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	257,626,383 - 257,670,650 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	276,281,516 - 276,349,781 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	250,951,712 - 250,952,232 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	233,291,456 - 233,328,678 (+)	NCBI		Celera
Cytogenetic Map	2	q45	NCBI

ZZZ3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	77,562,416 - 77,683,398 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	77,562,416 - 77,683,422 (-)	Ensembl			hg38	GRCh38
GRCh37	1	78,028,101 - 78,149,083 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	77,802,776 - 77,920,931 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	77,742,210 - 77,860,364	NCBI
Celera	1	76,269,714 - 76,387,851 (-)	NCBI		Celera
Cytogenetic Map	1	p31.1	NCBI
HuRef	1	76,161,995 - 76,280,107 (-)	NCBI		HuRef
CHM1_1	1	78,146,076 - 78,264,208 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	77,401,275 - 77,522,228 (-)	NCBI		T2T-CHM13v2.0

Zzz3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	152,101,110 - 152,168,463 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	152,101,110 - 152,168,463 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	152,395,473 - 152,462,826 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	152,395,473 - 152,462,826 (+)	Ensembl			mm10	GRCm38
MGSCv37	3	152,058,974 - 152,125,790 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	152,334,080 - 152,396,863 (+)	NCBI		MGSCv36	mm8
Celera	3	158,880,965 - 158,931,207 (+)	NCBI		Celera
Cytogenetic Map	3	H3	NCBI
cM Map	3	77.16	NCBI

Zzz3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	15,523,522 - 15,583,742 (+)	Ensembl
ChiLan1.0	NW_004955423	15,523,859 - 15,583,742 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZZZ3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	149,203,171 - 149,325,014 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	148,368,476 - 148,487,789 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	76,783,387 - 76,902,711 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	78,866,118 - 78,986,872 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	78,866,284 - 78,986,872 (-)	Ensembl			panPan2	panpan1.1

ZZZ3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	69,180,465 - 69,278,740 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	69,180,349 - 69,277,596 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	71,838,616 - 71,941,048 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	69,766,826 - 69,869,370 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	69,767,108 - 69,865,049 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	69,272,914 - 69,374,099 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	69,217,992 - 69,320,218 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	69,703,912 - 69,806,205 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zzz3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	88,880,687 - 89,015,109 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936571	4,423,662 - 4,524,926 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936571	4,391,318 - 4,525,720 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZZZ3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	135,606,192 - 135,741,487 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	135,605,712 - 135,746,019 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	125,811,359 - 125,945,360 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZZZ3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	55,493,316 - 55,613,263 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	55,537,143 - 55,612,122 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	61,902,516 - 62,026,654 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zzz3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	19,562,574 - 19,625,049 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624742	19,515,291 - 19,630,055 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zzz3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	9,165,270 - 9,200,055 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zzz3
510 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	482
Count of miRNA genes:	262
Interacting mature miRNAs:	337
Transcripts:	ENSRNOT00000071770
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	205135267	250135267	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	210956252	251712708	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
1298075	Scl17	Serum cholesterol level QTL 17	3.4		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	214404877	251712708	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
2293833	Kiddil8	Kidney dilation QTL 8	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	220274283	249795005	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	203664411	248664411	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	204795005	249795005	Rat
7207490	Bss111	Bone structure and strength QTL 111	6.4		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	2	214404877	251712708	Rat
7207484	Bss108	Bone structure and strength QTL 108	5.3		femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	2	214404877	251712708	Rat
2313073	Bmd75	Bone mineral density QTL 75	4.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	2	218051934	251712708	Rat
7207482	Bss107	Bone structure and strength QTL 107	7		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	2	214404877	251712708	Rat
2293844	Kiddil7	Kidney dilation QTL 7	3.5		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	220274283	249795005	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	196140964	251540988	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	205135267	250135267	Rat
1549836	Bss2	Bone structure and strength QTL 2	7.5		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	2	214404877	251712708	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	205135267	250135267	Rat

Markers in Region

RH133092

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	243,989,456 - 243,989,664 (+)	Marker Load Pipeline
mRatBN7.2	2	241,329,511 - 241,329,719 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	257,603,850 - 257,604,057	NCBI	Rnor6.0
Rnor_5.0	2	276,281,848 - 276,282,055	UniSTS	Rnor5.0
RGSC_v3.4	2	250,921,115 - 250,921,322	UniSTS	RGSC3.4
Celera	2	233,262,013 - 233,262,220	UniSTS
RH 3.4 Map	2	1650.11	UniSTS
Cytogenetic Map	2	q45	UniSTS

RH143133

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	241,361,478 - 241,361,598 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	257,635,955 - 257,636,074	NCBI	Rnor6.0
Rnor_5.0	2	276,313,953 - 276,314,072	UniSTS	Rnor5.0
RGSC_v3.4	2	250,953,206 - 250,953,325	UniSTS	RGSC3.4
Celera	2	233,293,986 - 233,294,105	UniSTS
RH 3.4 Map	2	1650.82	UniSTS
Cytogenetic Map	2	q45	UniSTS

RH124726

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	241,393,635 - 241,393,737 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	257,668,111 - 257,668,212	NCBI	Rnor6.0
Rnor_5.0	2	276,346,109 - 276,346,210	UniSTS	Rnor5.0
Celera	2	233,326,139 - 233,326,240	UniSTS
Cytogenetic Map	2	q45	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM103952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN806367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000071770 ⟹ ENSRNOP00000066308

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	244,011,850 - 244,053,892 (+)	Ensembl
mRatBN7.2 Ensembl	2	241,331,022 - 241,397,307 (+)	Ensembl
Rnor_6.0 Ensembl	2	257,633,425 - 257,670,650 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080993 ⟹ ENSRNOP00000071216

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	244,011,941 - 244,056,118 (+)	Ensembl
mRatBN7.2 Ensembl	2	241,354,565 - 241,396,175 (+)	Ensembl
Rnor_6.0 Ensembl	2	257,626,383 - 257,667,552 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000143793 ⟹ ENSRNOP00000101189

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	243,990,289 - 244,053,886 (+)	Ensembl

RefSeq Acc Id:

NM_001134549 ⟹ NP_001128021

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	244,018,893 - 244,056,118 (+)	NCBI
mRatBN7.2	2	241,358,949 - 241,396,175 (+)	NCBI
Rnor_6.0	2	257,633,425 - 257,670,650 (+)	NCBI
Rnor_5.0	2	276,281,516 - 276,349,781 (+)	NCBI
RGSC_v3.4	2	250,951,712 - 250,952,232 (+)	ENTREZGENE
Celera	2	233,291,456 - 233,328,678 (+)	NCBI

Sequence:

show sequence

GTTTCCCAATGAGTGGATCATGATGACCGTATGGTAGGGACTTGCCATAGTATGGCTGCTTCCC
GATCTACTCGTGTTACAAGATCAACAGTGGGGTTAAACGGCTTGGATGAATCTTTTTGTGGTAG
AACTTTAAGGAATCGTAGCATTGCTCACCCAGAAGAAATCTCTTCTCATTCTCAAGTGCGATCA
AGATCACCAAAGAAGAGACCAGAGCCTGTGCCAATTCTGAAAGGAAATAATAACGGAAGAACTT
CTGATGTAAAACAGCAGAGTGCTCGAGAATGGGTAAGCCCTAGGAAAAGAAGACTTTCTTCTTC
GGAAAAGGATGACCTAGAAAGGCAGGCCCTAGAGAGTTGTGAGAGAAGGCAGGCAGAGCCAGCA
CTGCCAGTCTTAAAGAACATTAAACGCTGTCTTAGAGCTGAAGCCACAAACAGTTCAGAAGAAG
ATTCGCCTGTAAAACCAGACAAGGAGCCAGTAGAAATCAGGCGGACAGTAGTGGACCATGATGC
AGAGTTTCAAGGGGCTAAACGAGCTTGTCGATGTCTTATATTGGATGATTGTGAGAAAAGGGAA
GTTAAAAAGGTGAATGTCAGTGAGGAAGGGCCACTTAATGCTGCAGTATTAGAAGAAATCACAG
GCTATCTGACTGTCAATGGTGTTGACGACAGTGACTCAGCTGTTATAAACTGTGATGACTGTCA
GCCTGACAGGAACACTAAACAAAATAGCCCTGGTTCCTGTGTGCTGCAGGAAGAATCAGTAGCT
GGAGATGGGGATTCGGAAACCCAGACTTCAGTGTTCTGTGGTAGTGGGAAGGAGGACAGTTGTA
TAGACCATTTCGTGCCTTGCACAAAGTCAGATGTGCAGGTCAAGTTGGAGGACCACAAACTAGT
AACTGCCTGCCTGCCTGTGGAACGTCGGAGTCAGCTGACTGCTGAGTCAGCTTCAGGCCCTGTT
TCTGAAGTTCAGTCATCCTTAAGAGATTCTGAGGAAGAAGTAGATGTGGTGGGAGATAGCAGTG
CCTCCAAAGAGCAGTGTAATGAGAACAGCAGTGACCCTCTGGACACGGGGTCTGAGTGCTTGCC
AGCCTCTGGAGAGCCTGAACTGTCCTCTATGCTAGACTGTGTTTCAGCTCAAATGACATCTTTG
TCAGAACCTCAAGAACATCGATACACCCTGAGAACTTCACCTCGAAGGGCGGCCCAAACCAGAG
GTAGTCCCACTAAAAACACATCTCCTTACAGAGAAAATGGACAATTTGAGGAGAATAATCTCAG
TCCCAATGAGACAAACACAACTGCTAGTGATAATGTAAGTGAGTCTCCCACAAATCCTGTTGAG
ATCTCTCAAGATGAAAAGGTTCTATGTTGTGACTCTGAAAACTATGGAAGTGAAGGACTAAGTA
AGCCATCTTCAGAGGCCAGAATGAATATCGGACATTTGCCATCTGCCAAAGAGAGTGCCAGTCA
GCACACTGCGGAAGAGGAAGATGATGACCCTGATGTTTATTACTTTGAATCAGATCATGTGGCA
CTGAAACACAACAAAGATTATCAGAGACTTCTGCAGACCATTGCTGTACTTGAGGCTCAGCGTT
CTCAAGCAGTGCAAGACCTGGAAAGTTTAGGCAAACACCAGAGAGAAGCACTAAAAAATCCTAT
TGGATTTGTGGAGAAACTTCAGAAGAAGGCTGATATAGGGCTTCCATATCCACAGAGAGTTGTG
CAGTTGCCGGAGATCGTGTGGGACCAGTACACCAGTAGCCTTGGCAACTTTGAAAGGGAGTTTA
AACATCGCAAAAGACACACTAGGAGAGTTAAGTTAGTTTTTGATAAAGTAGGGTTGCCTGCTAG
ACCAAAAAGTCCTTTAGATCCTAAGAAGGATGGAGACTCCCTTTCATATTCCATGTTGCCTTTG
AGTGATGGCCCAGAAGGTTCGCATCATCGTCCTCAGATGATCAGAGGTCGTCTGTGTGATGACA
GCAAACCTGAGACCTTCAACCAGCTGTGGACTGTTGAAGAGCAGAAAAAACTTGAACAGCTACT
CCTGAAGTACCCTCCTGAAGAAGTAGAATCTCGGCGGTGGCAGAAGATTGCTGATGAACTGGGC
AACCGGACAGCCAAACAGGTTGCCAGTCGTGTACAGAAGTATTTCATAAAGCTAACTAAAGCCG
GCATACCAGTTCCAGGCAGAACACCTAACTTATATATATACTCCAGGAAGTCCTCAACGAGCAG
GCGACAGCACCCCCTTAATAAGCACCTCTTTAAACCCTCCACTTTCATGACTTCACATGAGCCA
CCAGTGTACATGGATGAAGATGATGAGCGGTCCTGTCCCCATAGCCACATGAGCACTGCTGTCG
AGGAGGCCTCAGATGAAGAAAGCATTCCTGTCATTTATAGGAGTTTACCTGAATATAAAGAACT
ATTACAGTTTAAAAAGTTAAAAAAGCAGAAACTTCAACAAATGCAAGCAGAAAGTGGGTTTGTG
CAACATGTGGGCTTTAAGTGTGATAACTGCGGTGTAGAACCTATCCAAGGTGTCCGGTGGCACT
GCCAGGATTGTCCTCCAGAAATGTCTTTGGATTTCTGTGACTCTTGTTCAGACTGCCCACATGA
AACGGATATTCACAAGGAAGATCACCAGTTAGAACCTGTTTATAAGTCGGAGACGTTCTTAGAC
AGAGACTACTGTGTGTCCCAGGGCACCAGTTATAGTTATCTTGACCCCAACTACTTCCCCGCCA
ACAGATGACATGGAAGAGTGTTGCACTAGTCCTCGTCAACACACAGCAGTGGCATCATTATTAA
TGGTGTGCACAGTTTGCACACTCACAGCATGAGAGCTCCCCGAGTGTTCTCGTCAAGTACAGCT
CTGCACTGTGTGGCTGTAGGTCCGCAGCTGAACCTTCCTGGTGAGCCGAGAGGTTCCTTGGTGA
AATCTTCACCACAACTTAAAGCCTTGTAGGTGGTGATGCTAAATGGGTGAGGTGGAAACAAGAG
CACACATTAATGCCAGAGTCAATTCCAAAGGTTTTAAAGACCTCGGTCATAAATATGATAATGA
AAGACAAAGTATTTATATTAAATCAGTTTAGTAGCTTTCAGTTTTGTGAAGATAGTTTTCAGCG
CAGAAACAGACGTAGAGACGAAGTTTTAACCAGTGATGGTGTTTGCTTCTAGGACGTGTACTCT
AAAAGAACTCACTGTCTGGTGGTCACTGATCGCCTGTAGTAGACTGGAGCTGCTTAACGGTTTG
ATACCTAACTTAATCACGATGAACTGTCCGTACCAAGAGCAGAGCGAGAGATAGCTGTGGCTTT
GCTTCTGTAGCCAGCTCATGGGGTGTGAGTGTCATGAAGTTGTCACGCAGATATATTTTTAATG
TCATGTTATATGAGATGATCATGTGATGTGTACAGACTATGTTGAGAAGTGCCAGTGGTAGTAA
CTGTAAAGTCTGACTCACAACATTAACCCTTTAAAGTACACAGCCTTCTGCCTCTGTGTGGAGT
TGTCAGTACAGCTCGTCAGAGAAAACTGCCTAATATAAAAATCATATATATGGTGATAATTTCT
CCCTCTTTTGTAGTCTGCACAAGATCCATAAAAGATTGTATTTTTATTACTATTTAACGAGTGA
TTAAATGTAGTCTGCACAGTGAGCAAGAGTTCACAATTCTTTTATACTGCTGGATTTTGTTGTG
CATCATTTAAAACATTTTGTATGTTTCTTACCTGTGTATACAGTATGTTCTTGAATAATGTTCA
TTTGTCAGGAGAACTGTGAGAAATAAACTATGTGGACATGTTTGTTTATATTATAGAGAGCTTG
TTGTGAATTCCTTGGGTCAAGTTTCGATTTTTTTTTTTTTTTAAACAAGTGAAAAAGTAGAATT
TGTTATTTAAAAGTCTGCTTTTCGGCTGTATTTGCCTTCTGTTCTTTACAAAGGTGAAGCTGTA
TTGTGCTGGTGTTCTCATGTAGCGGCTGAGACACTGCACAGCGAGGTGCTGACTAATGTCCAGG
TGTGGGACCTGAATACAAGTTAAAGTTTTATTCTCGTAGGTTTTTCTTAATAAAATTAAGTTCC
CGTGTGTTGGATCAAGTGGTTTCCAAAAATTATCAAAGAAAGAAAAGATAGTATATATTCTATG
GTAGATGGAGTATTAATACTAGTTCTTAACATTGTTTTTTCCTGTTTTTTAAGTTCAGGGAATT
CTTTAAAATACTCAGCAAGTTATTAAAATACCCTGAATTTTTTAATTAAGAAAAATACAGAATT
TTAACTATAGAAAAGAGAAATTTAAATAATATATTGATTATGTATCACTGGTCATATTGATACA
GTCTATTGTACCCAGAAAGAAAAGCTGACAGGCTTTTGTCTCTGGGCTATTAGTGAAGGAGAGG
CAGTCTGATGATGTGGATCTCTGCTGGATGCTCCATGCGCATGCCGAGGGCTTCCTCCCCTCCC
CCTCTGCAGTGCGCAGGGCAGGGCACCTCTCTGTATGGAAGTCGTACCAGGTAGTTGTGTAGAT
CCATCCAGAAGTCCCACAGGAAGTACAGTGTAGAAGGGGGGGAGTGACAACAGTGTAAGGACCA
CAAGAGCAGACGAACCTACCTGAGTATATTTTAAGACTGAGGTGATAATGTGGGGTTTTCCTGT
TTGAACAGAAAATATTTTTATTTTGGATTTGTCAGCTCTAAGCACATTGTCCCCATGGCTTGCT
GGGGACAATTCCTCGTGTTTTATTTGAGAGTTGAAGAAGTAGGCAGGCTGTTCTTTGCAAGTAG
ACCGTCTATCTCTCTTCCAAGGAATATTGGCTGCCCACAGTTGGAGTTGAGAAGTGGTGTCTTC
AAGGCTCTTAGTATGTCAGATTTATTTCATGGTGTGTGATGCTCAAGTTCTTTGCTACTAACTG
GAGGAACATTTGCTAACACCGGAAGCAGTTGCTGAGGTTAGGGAACAGTTTCCTTTCATGTGAT
GCACTGATAGCACATGCTGATTTAGCACTCTCTGTGCACTGTGCACTGTGGCAACTCATTGCAT
TCTCAGCCCAACAAAGCAGGTTCAAAAGAAGTTAAGTGACTCACCCAGGGTCATATTGGTAGGG
AAGTGATAAGACTTTGTCTTTAACCACGATGGATCCCTTTGTCATTCTTGGTTTCCCAAGCAAG
AACACCTCCATTGTCAGATACTCTGCGTTTTTCATGCCTTTTTTTCCTCATGCAATGCTAGAAT
ACAAGACTGAGCCATGTCCATGTTTGTAATACAAGAGAGAGAGGCCCTTGTGTGGCTGGACAAG
TGCCAGTATATCCCATTGTGACTGGGAGCACACATGCCTCTCCATCCCCTCTCACCCCGTCCCG
TGGCTTTCCTTGACTCCTCTCCCCCTTCAGTTACATTAACTCACTGAACACAGTTACTGAGGTG
TTAGGGATGGAGTTGAAGGGCTGGCAGAAAATGGCACATCACTGTACTAGATGATCTTCTGTAA
GCAGCTGTGTGAGATCTACTGTGTGAGCTTTCGTACTCTGGAGCGCCCGGTTTAAACCTATGGT
CGGGTGCACTGGAGGAAACCAGTGGTTTCCAGTGCATTTCCCTCTTTGAACTTATAGAGTTAAG
TGTTCAGAGGAAGGGTTACTGCTAGTCATAGATCTCAGAGGACAGCAAGCCCGCTTCCAGGGTT
TAAGCATCTGTTAAGTGGATTGATTTCTATTCTCTGACTTTTTAATAGATTCTCTATAAGTATT
TGTTGGTTATGTGACCCAGTATTCTTCTTTAGAGGGTACTGGAGCCCAGTATATGAGGTGCTAG
TGACTCTTGAAAAGCCCGTCACAGGGTACAGGGTCCCTTGACCTGCCCTGGAGGACAGTCTTTG
CATCCAGCTTGACAATGAAGGGTGTGATCAGTCAATCAGATCGTATATCTTGGGTGTATCTCTG
TCACATTTGCCATGACAGTTTGGGTCTTAGTCAAGTACCCTTGATTGAGTTCTAGGAACTAGTT
ACTGACTTGCAGCCTTTCTAATTGTATATGTGGGAAAAGT

hide sequence

RefSeq Acc Id:

XM_006233491 ⟹ XP_006233553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	244,018,893 - 244,057,251 (+)	NCBI
mRatBN7.2	2	241,330,366 - 241,393,337 (+)	NCBI
Rnor_6.0	2	257,602,924 - 257,667,812 (+)	NCBI
Rnor_5.0	2	276,281,516 - 276,349,781 (+)	NCBI

Sequence:

show sequence

TAATCGAGTTTATTAATTATTTCAGAATGAGCATGGTGGTTGGCATCTATCTCCCAGCACCCAG
CAGGCTCAGGCTGGAGTGGAACAAGACTGTCTCAAAACAACAGCTAACTACACATGAAACCATA
TCAATTGTGGGTTAAAAAATTGTGATTTTTCTACCCACCCATCTTGATATAGGATGTCACGCAT
GCTGGACACTATCTTGTTTTAGTTTGGATGTGAAATACGTCTTGTGTTGAAGCACCACATAACA
GGGAGTGTTGTGAGATAACTGTATCCTAAGGATGTCAACATCATCCATGGGCTAACATTAATAT
TCTGAAAAGCTGAGGGGTGAGATCCACTGGGAGAGAAGAGGGTCATGGGTTGGGTTTCTCTCAG
CAGATGTTTACATATTAGTGCAGTGACTTACAAGGGAATGTTCTTGGTATCGTTCCCATGGAAG
AGAAATAAGGAGTGCTTTGTCTAGTCCATGTGGTTATGCAGATGGGATGCTGGCTGGACAGTGC
TCCCAGCAGCAGGTACATTCTGACCATCCCAATAGTAGCTAGCCTATGCAGATAGCATATTGTC
TAGCAGGGAAACGGTGTTATTTTTATATCTGTCTATTGCAAATCCAACAGAGAGTCTAATAAAG
ACTATAGGAGGTGTGCTGTGGTGAGATCCTATATGCCCGCTACCAGGAAAACAAGGCAGTGGAG
AGCAGTGTCTCTGAAATACAAAAAAGATGGCAGGTGTGATTATCAGTATAACTATAATCCGTAT
TCTTTATTTGGGGTCAGATATTACTCTGAGATGAATTGGAGACAACCGAATACAGGCCCACTTC
AATGATTTAATAATTTACCAGCAATTGTAAAGAAACCACACATACCCACTACCTTGGAAAAACA
AAACTGCTCCAGCTAAGGAAAACAAAGGCAGTGAAGCCATACCTCTTCCCACTTGTGAAGAGCC
CCAGTTAATGGATTCTACCAGTGAACTTGGTATTTTTGGACACAATCTAATAGCCAGAAGGCTG
CATCAGCGTTCTCACGATCAGAAGTGGTGACCTATGGTGCTATCAACCCAGAGGAAATGCTTAT
CTCTATTACTGAAGGCAGGCATTACGTTGCTACACTCCCAATTCTGTATGTTTGAAGGCAGGGG
TTATGGATTGAACTCAGCTTCATGTAGGGTAAGCACATGCTGAGCTACATAAATACACCTTCCC
AGCTCCACTAACCATTTTTCAATACCGGTTGAGCCATACTTGGTGCTGGACACAACTGTGGGCA
AAAGGCGAGAGATGTCTGCCTTGCCTTTAAAGAGACTGCATTCTCGGTGGCGAGAGCGCTTAGA
GGTAATGGGTAGAAGTGCTGTTTAAAGGTATGGAGATAAGAGCAGTGGAGGTATACTCTGATGG
GACTTCTGCGATGAAACCTGAAATGCAGGTCGAGCAGGAAAGGTGTTCTGCCCTAGGGAAGGAG
GGGAGGGTGAGCAAAGGTTGGAGAGGTGAGCGCCTGCCTCCCGAGCAGCTGGCGAGGTAGACCG
CAGCGTCTTGCGGAAACCGGAGCCACTCAAGGTCCGGACGCAGGAGAGCAGCCTCTCCTGGGAG
TTAGAGCAGGTCACACCACACAGTAGGCTGGTCTGGCCCTCCCTCCACCCCGGGCGGGATCGCT
GCACCGGCCGCGGCCACCGGCAGGTGGCGTGGTGAGCGCCCGGTTCCCAACTTCTCAAAGCCGA
GGAAGGAGGGGACCGGAAGGAGCCGCTGCTGCTGCGGGAAGTGGAGGAGCGGGAGGCGGGGACC
CACCTGGAAGCGCCGCGGCGCCGCTGTGGAGCTTCCTGCGGCGGAGGGCGCTGGAGCCAGTGCG
GGGGCCGACGGCGGCCACGCGGGCGGCGCCTCCCCGAGTGGCCGGCCCCGCACGAGAGATAACA
AGTTGTGCTTATTAGTACACCATTTAAATAACTCCTGAAGTCTCACCGTGACACAGACATTAGC
AGTGATGACAGATAAAGACAGATGCTTGGAAACTAACGACTAGGTCAGACTCCTCAAAAGAGAG
GCGTTTAAGAGGTTCTGGTATTCTCCGAGGCTGAAGCTGAGAGTCTGAAAGCCTGAAACTTACG
GTCTATTGTAGATCATAGCTCCATCTTCTTCAGGATATAAGGGAAGAAGTGACATTTCCACAAT
GATAGATCTTTGGTTGTGCAGGTTTCCCAATGAGTGGATCATGATGACCGTATGGTAGGGACTT
GCCATAGTATGGCTGCTTCCCGATCTACTCGTGTTACAAGATCAACAGTGGGGTTAAACGGCTT
GGATGAATCTTTTTGTGGTAGAACTTTAAGGAATCGTAGCATTGCTCACCCAGAAGAAATCTCT
TCTCATTCTCAAGTGCGATCAAGATCACCAAAGAAGAGACCAGAGCCTGTGCCAATTCTGAAAG
GAAATAATAACGGAAGAACTTCTGATGTAAAACAGCAGAGTGCTCGAGAATGGGTAAGCCCTAG
GAAAAGAAGACTTTCTTCTTCGGAAAAGGATGACCTAGAAAGGCAGGCCCTAGAGAGTTGTGAG
AGAAGGCAGGCAGAGCCAGCACTGCCAGTCTTAAAGAACATTAAACGCTGTCTTAGAGCTGAAG
CCACAAACAGTTCAGAAGAAGATTCGCCTGTAAAACCAGACAAGGAGCCAGTAGAAATCAGGCG
GACAGTAGTGGACCATGATGCAGAGTTTCAAGGGGCTAAACGAGCTTGTCGATGTCTTATATTG
GATGATTGTGAGAAAAGGGAAGTTAAAAAGGTGAATGTCAGTGAGGAAGGGCCACTTAATGCTG
CAGTATTAGAAGAAATCACAGGCTATCTGACTGTCAATGGTGTTGACGACAGTGACTCAGCTGT
TATAAACTGTGATGACTGTCAGCCTGACAGGAACACTAAACAAAATAGCCCTGGTTCCTGTGTG
CTGCAGGAAGAATCAGTAGCTGGAGATGGGGATTCGGAAACCCAGACTTCAGTGTTCTGTGGTA
GTGGGAAGGAGGACAGTTGTATAGACCATTTCGTGCCTTGCACAAAGTCAGATGTGCAGGTCAA
GTTGGAGGACCACAAACTAGTAACTGCCTGCCTGCCTGTGGAACGTCGGAGTCAGCTGACTGCT
GAGTCAGCTTCAGGCCCTGTTTCTGAAGTTCAGTCATCCTTAAGAGATTCTGAGGAAGAAGTAG
ATGTGGTGGGAGATAGCAGTGCCTCCAAAGAGCAGTGTAATGAGAACAGCAGTGACCCTCTGGA
CACGGGGTCTGAGTGCTTGCCAGCCTCTGGAGAGCCTGAACTGTCCTCTATGCTAGACTGTGTT
TCAGCTCAAATGACATCTTTGTCAGAACCTCAAGAACATCGATACACCCTGAGAACTTCACCTC
GAAGGGCGGCCCAAACCAGAGGTAGTCCCACTAAAAACACATCTCCTTACAGAGAAAATGGACA
ATTTGAGGAGAATAATCTCAGTCCCAATGAGACAAACACAACTGCTAGTGATAATGTAAGTGAG
TCTCCCACAAATCCTGTTGAGATCTCTCAAGATGAAAAGGTTCTATGTTGTGACTCTGAAAACT
ATGGAAGTGAAGGACTAAGTAAGCCATCTTCAGAGGCCAGAATGAATATCGGACATTTGCCATC
TGCCAAAGAGAGTGCCAGTCAGCACACTGCGGAAGAGGAAGATGATGACCCTGATGTTTATTAC
TTTGAATCAGATCATGTGGCACTGAAACACAACAAAGATTATCAGAGACTTCTGCAGACCATTG
CTGTACTTGAGGCTCAGCGTTCTCAAGCAGTGCAAGACCTGGAAAGTTTAGGCAAACACCAGAG
AGAAGCACTAAAAAATCCTATTGGATTTGTGGAGAAACTTCAGAAGAAGGCTGATATAGGGCTT
CCATATCCACAGAGAGTTGTGCAGTTGCCGGAGATCGTGTGGGACCAGTACACCAGTAGCCTTG
GCAACTTTGAAAGGGAGTTTAAACATCGCAAAAGACACACTAGGAGAGTTAAGTTAGTTTTTGA
TAAAGGGTTGCCTGCTAGACCAAAAAGTCCTTTAGATCCTAAGAAGGATGGAGACTCCCTTTCA
TATTCCATGTTGCCTTTGAGTGATGGCCCAGAAGGTTCGCATCATCGTCCTCAGATGATCAGAG
GTCGTCTGTGTGATGACAGCAAACCTGAGACCTTCAACCAGCTGTGGACTGTTGAAGAGCAGAA
AAAACTTGAACAGCTACTCCTGAAGTACCCTCCTGAAGAAGTAGAATCTCGGCGGTGGCAGAAG
ATTGCTGATGAACTGGGCAACCGGACAGCCAAACAGGTTGCCAGTCGTGTACAGAAGTATTTCA
TAAAGCTAACTAAAGCCGGCATACCAGTTCCAGGCAGAACACCTAACTTATATATATACTCCAG
GAAGTCCTCAACGAGCAGGCGACAGCACCCCCTTAATAAGCACCTCTTTAAACCCTCCACTTTC
ATGACTTCACATGAGCCACCAGTGTACATGGATGAAGATGATGAGCGGTCCTGTCCCCATAGCC
ACATGAGCACTGCTGTCGAGGAGGCCTCAGATGAAGAAAGCATTCCTGTCATTTATAGGAGTTT
ACCTGAATATAAAGAACTATTACAGTTTAAAAAGTTAAAAAAGCAGAAACTTCAACAAATGCAA
GCAGAAAGTGGGTTTGTGCAACATGTGGGCTTTAAGTGTGATAACTGCGGTGTAGAACCTATCC
AAGGTGTCCGGTGGCACTGCCAGGATTGTCCTCCAGAAATGTCTTTGGATTTCTGTGACTCTTG
TTCAGACTGCCCACATGAAACGGATATTCACAAGGAAGATCACCAGTTAGAACCTGTTTATAAG
TCGGAGACGTTCTTAGACAGAGACTACTGTGTGTCCCAGGGCACCAGTTATAGTTATCTTGACC
CCAACTACTTCCCCGCCAACAGATGACATGGAAGAGTGTTGCACTAGTCCTCGTCAACACACAG
CAGTGGCATCATTATTAATGGTGTGCACAGTTTGCACACTCACAGCATGAGAGCTCCCCGAGTG
TTCTCGTCAAGTACAGCTCTGCACTGTGTGGCTGTAGGTCCGCAGCTGAACCTTCCTGGTGAGC
CGAGAGGTTCCTTGGTGAAATCTTCACCACAACTTAAAGCCTTGTAGGTGGTGATGCTAAATGG
GTGAGGTGGAAACAAGAGCACACATTAATGCCAGAGTCAATTCCAAAGGTTTTAAAGACCTCGG
TCATAAATATGATAATGAAAGACAAAGTATTTATATTAAATCAGTTTAGTAGCTTTCAGTTTTG
TGAAGATAGTTTTCAGCGCAGAAACAGACGTAGAGACGAAGTTTTAACCAGTGATGGTGTTTGC
TTCTAGGACGTGTACTCTAAAAGAACTCACTGTCTG

hide sequence

RefSeq Acc Id:

XM_039102493 ⟹ XP_038958421

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	244,018,893 - 244,039,372 (+)	NCBI
mRatBN7.2	2	241,330,366 - 241,379,428 (+)	NCBI

RefSeq Acc Id:

XM_039102494 ⟹ XP_038958422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	244,018,893 - 244,039,353 (+)	NCBI
mRatBN7.2	2	241,330,366 - 241,379,415 (+)	NCBI

RefSeq Acc Id:

XM_039102495 ⟹ XP_038958423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	243,990,305 - 244,057,251 (+)	NCBI
mRatBN7.2	2	241,330,366 - 241,393,337 (+)	NCBI

RefSeq Acc Id:

XM_063281986 ⟹ XP_063138056

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	243,990,766 - 244,057,251 (+)	NCBI

RefSeq Acc Id:

XM_063281987 ⟹ XP_063138057

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	243,992,645 - 244,057,251 (+)	NCBI

RefSeq Acc Id:

XM_063281988 ⟹ XP_063138058

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	243,991,086 - 244,057,251 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128021	(Get FASTA)	NCBI Sequence Viewer
	XP_006233553	(Get FASTA)	NCBI Sequence Viewer
	XP_038958421	(Get FASTA)	NCBI Sequence Viewer
	XP_038958422	(Get FASTA)	NCBI Sequence Viewer
	XP_038958423	(Get FASTA)	NCBI Sequence Viewer
	XP_063138056	(Get FASTA)	NCBI Sequence Viewer
	XP_063138057	(Get FASTA)	NCBI Sequence Viewer
	XP_063138058	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL82505	(Get FASTA)	NCBI Sequence Viewer
	EDL82506	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000066308
	ENSRNOP00000066308.4
	ENSRNOP00000071216
	ENSRNOP00000071216.3
	ENSRNOP00000101189
	ENSRNOP00000101189.1

RefSeq Acc Id:

NP_001128021 ⟸ NM_001134549

- UniProtKB:

M0R9X4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVGTCHSMAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSHSQVRSRSPKKRPEPV
PILKGNNNGRTSDVKQQSAREWVSPRKRRLSSSEKDDLERQALESCERRQAEPALPVLKNIKRC
LRAEATNSSEEDSPVKPDKEPVEIRRTVVDHDAEFQGAKRACRCLILDDCEKREVKKVNVSEEG
PLNAAVLEEITGYLTVNGVDDSDSAVINCDDCQPDRNTKQNSPGSCVLQEESVAGDGDSETQTS
VFCGSGKEDSCIDHFVPCTKSDVQVKLEDHKLVTACLPVERRSQLTAESASGPVSEVQSSLRDS
EEEVDVVGDSSASKEQCNENSSDPLDTGSECLPASGEPELSSMLDCVSAQMTSLSEPQEHRYTL
RTSPRRAAQTRGSPTKNTSPYRENGQFEENNLSPNETNTTASDNVSESPTNPVEISQDEKVLCC
DSENYGSEGLSKPSSEARMNIGHLPSAKESASQHTAEEEDDDPDVYYFESDHVALKHNKDYQRL
LQTIAVLEAQRSQAVQDLESLGKHQREALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQY
TSSLGNFEREFKHRKRHTRRVKLVFDKVGLPARPKSPLDPKKDGDSLSYSMLPLSDGPEGSHHR
PQMIRGRLCDDSKPETFNQLWTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASR
VQKYFIKLTKAGIPVPGRTPNLYIYSRKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDER
SCPHSHMSTAVEEASDEESIPVIYRSLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNC
GVEPIQGVRWHCQDCPPEMSLDFCDSCSDCPHETDIHKEDHQLEPVYKSETFLDRDYCVSQGTS
YSYLDPNYFPANR

hide sequence

RefSeq Acc Id:	XP_006233553 ⟸ XM_006233491
- Peptide Label:	isoform X1
- UniProtKB:	M0R9X4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVGTCHSMAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSHSQVRSRSPKKRPEPV PILKGNNNGRTSDVKQQSAREWVSPRKRRLSSSEKDDLERQALESCERRQAEPALPVLKNIKRC LRAEATNSSEEDSPVKPDKEPVEIRRTVVDHDAEFQGAKRACRCLILDDCEKREVKKVNVSEEG PLNAAVLEEITGYLTVNGVDDSDSAVINCDDCQPDRNTKQNSPGSCVLQEESVAGDGDSETQTS VFCGSGKEDSCIDHFVPCTKSDVQVKLEDHKLVTACLPVERRSQLTAESASGPVSEVQSSLRDS EEEVDVVGDSSASKEQCNENSSDPLDTGSECLPASGEPELSSMLDCVSAQMTSLSEPQEHRYTL RTSPRRAAQTRGSPTKNTSPYRENGQFEENNLSPNETNTTASDNVSESPTNPVEISQDEKVLCC DSENYGSEGLSKPSSEARMNIGHLPSAKESASQHTAEEEDDDPDVYYFESDHVALKHNKDYQRL LQTIAVLEAQRSQAVQDLESLGKHQREALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQY TSSLGNFEREFKHRKRHTRRVKLVFDKGLPARPKSPLDPKKDGDSLSYSMLPLSDGPEGSHHRP QMIRGRLCDDSKPETFNQLWTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASRV QKYFIKLTKAGIPVPGRTPNLYIYSRKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDERS CPHSHMSTAVEEASDEESIPVIYRSLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCG VEPIQGVRWHCQDCPPEMSLDFCDSCSDCPHETDIHKEDHQLEPVYKSETFLDRDYCVSQGTSY SYLDPNYFPANR hide sequence

Ensembl Acc Id:

ENSRNOP00000071216 ⟸ ENSRNOT00000080993

Ensembl Acc Id:

ENSRNOP00000066308 ⟸ ENSRNOT00000071770

RefSeq Acc Id:	XP_038958423 ⟸ XM_039102495
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JZX0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958421 ⟸ XM_039102493
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038958422 ⟸ XM_039102494
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063138056 ⟸ XM_063281986
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JZX0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138058 ⟸ XM_063281988
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JZX0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138057 ⟸ XM_063281987
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JZX0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000101189 ⟸ ENSRNOT00000143793

Protein Domains

HTH myb-type Myb-like ZZ-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R9X4-F1-model_v2	AlphaFold	M0R9X4	1-909	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565468	AgrOrtholog
BioCyc Gene	G2FUF-50797	BioCyc
Ensembl Genes	ENSRNOG00000050321	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000071770	ENTREZGENE
	ENSRNOT00000071770.4	UniProtKB/TrEMBL
	ENSRNOT00000080993	ENTREZGENE
	ENSRNOT00000080993.3	UniProtKB/TrEMBL
	ENSRNOT00000143793	ENTREZGENE
	ENSRNOT00000143793.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.60.90	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeodomain-like	UniProtKB/TrEMBL
	Myb_dom	UniProtKB/TrEMBL
	SANT/Myb	UniProtKB/TrEMBL
	Znf_ZZ	UniProtKB/TrEMBL
	Znf_ZZ_sf	UniProtKB/TrEMBL
	ZZZ3	UniProtKB/TrEMBL
	ZZZ3_ZZ	UniProtKB/TrEMBL
NCBI Gene	Zzz3	ENTREZGENE
PANTHER	PTHR22705	UniProtKB/TrEMBL
	ZZ-TYPE ZINC FINGER-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
Pfam	Myb_DNA-binding	UniProtKB/TrEMBL
	PF00569	UniProtKB/TrEMBL
PhenoGen	Zzz3	PhenoGen
PROSITE	HTH_MYB	UniProtKB/TrEMBL
	MYB_LIKE	UniProtKB/TrEMBL
	ZF_ZZ_1	UniProtKB/TrEMBL
	ZF_ZZ_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000050321	RatGTEx
SMART	SANT	UniProtKB/TrEMBL
	ZnF_ZZ	UniProtKB/TrEMBL
Superfamily-SCOP	Homeodomain_like	UniProtKB/TrEMBL
	RING/U-box	UniProtKB/TrEMBL
UniProt	A0A0G2JZX0	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LJX7_RAT	UniProtKB/TrEMBL
	A6HWL8_RAT	UniProtKB/TrEMBL
	A6HWL9_RAT	UniProtKB/TrEMBL
	A6HWM0_RAT	UniProtKB/TrEMBL
	M0R9X4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-09-08	Zzz3	zinc finger, ZZ-type containing 3	LOC310958	similar to zinc finger, ZZ domain containing 3	Data merged from RGD:1595862	737654	APPROVED
2008-09-25	Zzz3	zinc finger, ZZ-type containing 3	Zzz3	zinc finger, ZZ domain containing 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Zzz3	zinc finger, ZZ domain containing 3	RGD1565468_predicted	similar to Zinc finger, ZZ domain containing 3 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC310958	similar to zinc finger, ZZ domain containing 3			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-03-07	RGD1565468_predicted	similar to Zinc finger, ZZ domain containing 3 (predicted)	LOC499730	similar to Zinc finger, ZZ domain containing 3	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC499730	similar to Zinc finger, ZZ domain containing 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

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Imported Disease Annotations - CTD

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