Advanced Search (OLGA)

Gene: Parn (poly(A)-specific ribonuclease) Rattus norvegicus

Analyze

Symbol:

Parn

Name:

poly(A)-specific ribonuclease

RGD ID:

1565449

Description:

Predicted to enable several functions, including poly(A)-specific ribonuclease activity; protein kinase binding activity; and telomerase RNA binding activity. Predicted to be involved in RNA metabolic process; regulation of nucleobase-containing compound metabolic process; and regulation of telomerase RNA localization to Cajal body. Is active in glutamatergic synapse and postsynapse. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 6. Orthologous to human PARN (poly(A)-specific ribonuclease); PARTICIPATES IN RNA degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC360464; poly(A)-specific ribonuclease (deadenylation nuclease); poly(A)-specific ribonuclease PARN; RGD1565449; similar to Parn protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PARN (poly(A)-specific ribonuclease)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Parn (poly(A)-specific ribonuclease (deadenylation nuclease))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Parn (poly(A)-specific ribonuclease)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PARN (poly(A)-specific ribonuclease)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PARN (poly(A)-specific ribonuclease)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Parn (poly(A)-specific ribonuclease)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PARN (poly(A)-specific ribonuclease)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PARN (poly(A)-specific ribonuclease)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Parn (poly(A)-specific ribonuclease)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Parn (poly(A)-specific ribonuclease)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CLK4 (CDC like kinase 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PARN (poly(A)-specific ribonuclease)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Parn (poly(A)-specific ribonuclease (deadenylation nuclease))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Parn (poly(A)-specific ribonuclease (deadenylation nuclease))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	parn (poly(A)-specific ribonuclease (deadenylation nuclease))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	parn (poly(A)-specific ribonuclease (deadenylation nuclease))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	parn-1	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	parn	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	parn	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

NCBI Annotation Information:

Note: This gene aligns across a gap in the Rnor_6.0 reference genome assembly, and therefore, annotation of this gene is split across NW_007905911.1 and NW_007905912.1 in NCBI's Rattus norvegicus Annotation Release 105. [18 Jun 2015]

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	1,917,830 - 2,055,749 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	1,917,830 - 2,055,722 (-)	Ensembl				GRCr8
mRatBN7.2	10	1,410,636 - 1,548,573 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	1,410,642 - 1,548,560 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	6,108,223 - 6,245,254 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	34,320,569 - 34,457,608 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	1,425,524 - 1,562,262 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	1,309,724 - 1,461,123 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	1,308,414 - 1,461,269 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	204,485 - 358,376 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	1,788,754 - 1,925,032 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	473,716 - 609,470 (-)	NCBI		Celera
Cytogenetic Map	10	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive dyskeratosis congenita 6 (ISO)

dyskeratosis congenita (ISO)

genetic disease (ISO)

idiopathic pulmonary fibrosis (ISO)

pulmonary fibrosis (ISO)

Pulmonary Fibrosis and/or Bone Marrow Failure Syndrome, Telomere-Related, 4 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,6-di-tert-butyl-4-methylphenol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A5 (ISO)

caffeine (ISO)

choline (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

folic acid (ISO)

FR900359 (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

methapyrilene (ISO)

nitrates (ISO)

potassium dichromate (ISO)

propiconazole (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

thiram (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

box H/ACA sno(s)RNA 3'-end processing (IEA,ISO)

lncRNA processing (IEA,ISO)

miRNA catabolic process (IEA,ISO)

mRNA catabolic process (IEA)

negative regulation of macromolecule metabolic process (IEA)

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (IEA)

nuclear-transcribed mRNA poly(A) tail shortening (IBA,ISO)

poly(A)-dependent snoRNA 3'-end processing (IEA,ISO)

positive regulation of macromolecule metabolic process (IEA)

positive regulation of telomere maintenance via telomerase (IEA,ISO)

priRNA 3'-end processing (IBA)

regulation of RNA stability (IEA)

regulation of telomerase RNA localization to Cajal body (IEA,ISO)

RNA catabolic process (IEA)

RNA metabolic process (IEA)

siRNA 3'-end processing (IBA)

telomerase RNA stabilization (IEA,ISO)

Cellular Component

cytoplasm (IEA)

glutamatergic synapse (IDA)

nuclear speck (IEA,ISO)

nucleolus (IEA,ISO)

nucleus (IBA,IEA)

postsynapse (IDA)

Molecular Function

3'-5'-RNA exonuclease activity (IBA)

cation binding (IEA,ISO)

exonuclease activity (IEA)

hydrolase activity (IEA)

metal ion binding (IEA)

nuclease activity (IEA)

nucleic acid binding (IEA)

poly(A)-specific ribonuclease activity (IEA,ISO)

protein binding (ISO)

protein kinase binding (IEA,ISO)

RNA binding (IBA,IEA)

telomerase RNA binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Bidirectional control of mRNA translation and synaptic plasticity by the cytoplasmic polyadenylation complex.	Udagawa T, etal., Mol Cell. 2012 Jul 27;47(2):253-66. doi: 10.1016/j.molcel.2012.05.016. Epub 2012 Jun 21.

Additional References at PubMed

PMID:15358788	PMID:18337750	PMID:20932473	PMID:22442037	PMID:22658674	PMID:25049417	PMID:26482878	PMID:26950371

Genomics

Comparative Map Data

Parn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	1,917,830 - 2,055,749 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	1,917,830 - 2,055,722 (-)	Ensembl				GRCr8
mRatBN7.2	10	1,410,636 - 1,548,573 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	1,410,642 - 1,548,560 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	6,108,223 - 6,245,254 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	34,320,569 - 34,457,608 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	1,425,524 - 1,562,262 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	1,309,724 - 1,461,123 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	1,308,414 - 1,461,269 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	204,485 - 358,376 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	1,788,754 - 1,925,032 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	473,716 - 609,470 (-)	NCBI		Celera
Cytogenetic Map	10	q11	NCBI

PARN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	14,435,701 - 14,630,260 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	14,435,699 - 14,632,728 (-)	Ensembl			hg38	GRCh38
GRCh37	16	14,529,558 - 14,724,117 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	14,437,060 - 14,631,540 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	14,437,059 - 14,631,540	NCBI
Celera	16	14,706,337 - 14,900,899 (-)	NCBI		Celera
Cytogenetic Map	16	p13.12	NCBI
HuRef	16	14,448,361 - 14,642,982 (-)	NCBI		HuRef
CHM1_1	16	14,529,504 - 14,723,956 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	14,473,312 - 14,667,845 (-)	NCBI		T2T-CHM13v2.0

Parn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	13,355,828 - 13,486,035 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	13,355,824 - 13,486,034 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	13,537,964 - 13,668,198 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	13,537,960 - 13,668,170 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	13,538,057 - 13,668,263 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	13,451,542 - 13,581,748 (-)	NCBI		MGSCv36	mm8
Celera	16	14,141,614 - 14,273,156 (-)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	9.32	NCBI

Parn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	4,258,692 - 4,422,197 (+)	Ensembl
ChiLan1.0	NW_004955442	4,255,726 - 4,421,083 (+)	NCBI	ChiLan1.0	ChiLan1.0

PARN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	14,972,145 - 15,164,377 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	18,755,003 - 18,947,226 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	13,363,879 - 13,556,054 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	14,787,881 - 14,977,786 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	14,787,881 - 14,977,786 (-)	Ensembl			panPan2	panpan1.1

PARN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	28,629,137 - 28,783,671 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	28,629,174 - 28,783,901 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	29,992,537 - 30,147,919 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	28,792,691 - 28,948,127 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	28,792,731 - 28,947,297 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	28,595,636 - 28,750,791 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	28,483,721 - 28,639,090 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	28,891,075 - 29,046,446 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Parn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	114,569,040 - 114,714,225 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	2,666,874 - 2,810,488 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	2,666,908 - 2,810,159 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PARN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	28,612,269 - 28,802,504 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	28,616,808 - 28,802,506 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	29,618,701 - 29,877,403 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PARN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	13,891,362 - 14,089,576 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	13,891,369 - 14,089,518 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666068	15,963,884 - 16,163,050 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Parn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	3,919,965 - 4,093,743 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624782	3,920,042 - 4,092,179 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Parn
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	8,604,998 - 8,734,897 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Parn
562 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	34
Count of miRNA genes:	34
Interacting mature miRNAs:	34
Transcripts:	ENSRNOT00000061644
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
1549898	Neuinf3	Neuroinflammation QTL 3	26.4		nervous system integrity trait (VT:0010566)	MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)	10	1	5893911	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	1	17749933	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat

Markers in Region

D10Rat199

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	1,976,027 - 1,976,213 (+)	Marker Load Pipeline
mRatBN7.2	10	1,468,843 - 1,469,029 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	1,381,054 - 1,381,239	NCBI	Rnor6.0
Rnor_5.0	10	278,166 - 278,351	UniSTS	Rnor5.0
RGSC_v3.4	10	1,867,587 - 1,867,772	UniSTS	RGSC3.4
RGSC_v3.4	10	1,867,586 - 1,867,772	RGD	RGSC3.4
Celera	10	530,195 - 530,380	UniSTS
RGSC_v3.1	10	1,867,486 - 1,867,790	RGD
FHH x ACI Map	10	4.54	RGD
FHH x ACI Map	10	4.54	UniSTS
Cytogenetic Map	10	q11	UniSTS

D10Got229

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	2,057,347 - 2,057,573 (+)	Marker Load Pipeline
mRatBN7.2	10	1,550,172 - 1,550,398 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	1,462,872 - 1,463,097	NCBI	Rnor6.0
Rnor_5.0	10	359,984 - 360,209	UniSTS	Rnor5.0
RGSC_v3.4	10	1,786,780 - 1,787,005	UniSTS	RGSC3.4
Celera	10	611,219 - 611,444	UniSTS
Cytogenetic Map	10	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001270415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HQ123458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000078421 ⟹ ENSRNOP00000073884

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	1,917,830 - 2,055,722 (-)	Ensembl
mRatBN7.2 Ensembl	10	1,410,662 - 1,548,560 (-)	Ensembl
Rnor_6.0 Ensembl	10	1,308,864 - 1,461,269 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083125 ⟹ ENSRNOP00000070962

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	1,926,313 - 2,055,178 (-)	Ensembl
mRatBN7.2 Ensembl	10	1,494,632 - 1,548,560 (-)	Ensembl
Rnor_6.0 Ensembl	10	1,442,283 - 1,461,216 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084447 ⟹ ENSRNOP00000072539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	1,917,830 - 2,055,722 (-)	Ensembl
mRatBN7.2 Ensembl	10	1,410,642 - 1,548,560 (-)	Ensembl
Rnor_6.0 Ensembl	10	1,308,414 - 1,461,250 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093414

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	1,407,876 - 1,414,058 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093463

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	1,437,803 - 1,457,787 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000140097 ⟹ ENSRNOP00000100067

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	1,917,830 - 2,055,722 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000152993 ⟹ ENSRNOP00000101832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	1,917,830 - 2,055,722 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000163464 ⟹ ENSRNOP00000100699

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	1,917,830 - 2,055,722 (-)	Ensembl

RefSeq Acc Id:

NM_001270415 ⟹ NP_001257344

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,055,722 (-)	NCBI
mRatBN7.2	10	1,410,636 - 1,548,547 (-)	NCBI
Rnor_6.0	10	1,309,724 - 1,461,123 (-)	NCBI
Rnor_5.0	10	204,485 - 358,376 (-)	NCBI
Celera	10	473,716 - 609,470 (-)	NCBI

Sequence:

show sequence

ATGGAGATAATCCGGAGCAATTTTAAGATTAATCTTCCCAAAGTGTACCAGGCCATAGAGGAGG
CTGACTTCTTCGCCATCGATGGGGAGTTTTCAGGAATCAGTGATGGACCCTCAGTAACAGCATT
AACAAGTGGTTTTGACACCCCAGAAGAGAGATATCAGAAGCTTAAAAAGCATTCCATGGACTTC
TTGCTGTTTCAGTTTGGCCTCTGTGCTTTTAAGTATGACCACGCCAATTCCAAGCATGTAACGA
AGTCGTTTAACTTCTATGTTTTCCCCAAGCCTTTCAGTAGGTCCTCACCAGATGTCAAGTTTGT
TTGCCAGAGCTCCAGCATTGACTTTCTGGCAAGCCAAGGATTTGACTTTAATAAAGTGTTTTGC
AGTGGAATTCCATATCTGAACCAGGAAGAAGAAAGACAGCTGAGAGAGCAATTTGATGAAAAAC
GTTCTCAGGCCAATGGGGCCGGAGCTCTGACAAAATGTCCTGTGACAATTCCTGAGGATCAGAA
GAAGTTTATTGACCAAGTAATAGAGAAGATAGAGGGTTTCCTACAGAGAGAAGAGAAGAGGACT
CTGGAACTTAACCCATGCACTGGGTTCCAAAGAAAACTTATTTATCAGACTTTGAGTTGGAAGT
ATCCCAAAGGCATTCATGTTGAGACATTAGAGACTGACAAGAAGGAAAGACACATAGTTATCAG
CAAAGTGGATGAAGAAGAACGCAAAAGGAGAGAACAGGAGAAGTACGCAAAGGAGCAGGAGGAA
CTGAATGATGCTGTAGGATTTTCAAGAGTCATCCATGCGATTGCTAATTCGGGGAAGCTGGTTG
TTGGACACAACATGCTCTTGGATGTCATGCACACTATTCACCAGTTCTACTGCCCTCTGCCTGT
GGACCTGAATGAGTTTAAGGAGATGACAACATGTGTCTTCCCCAGACTCTTGGATACTAAATTG
ATGGCCAGCACCCAGCCCTTTAAGGATATCATTAACAATACATCCCTTGCAGAGTTGGAAAAGC
GGTTGAAAGAGACACCTTTTGACCCTCCTAAAGTTGAGAGTGCGGAAGGCTTTCCAAGCTACGA
CACAGCTTCTGAGCAGCTGCATGAGGCAGGTTATGATGCGTACATCACAGGACTCTGCTTCATC
TCCATGGCAAATTACTTAGGTTCTTTACTCAGTCCTCCAAAAACGTGTGTGTCCGCCAGATCAA
AGCTCATCGAACCCTTTTTTAACAAGTTATTTCTTATGAGGGTCATGGATATTCCCTATTTAAA
CTTGGAAGGGCCAGACTTGCAGCCTAAGCGGGATCATGTTCTCCATGTGACCTTCCCTAAAGAA
TGGAAAACCAGTGACCTGTACCAGCTCTTCAGCGCCTTTGGTAACATTCAGATATCCTGGATTG
ATGACACATCAGCCTTCGTTTCTCTCAGCCAACCAGAACAAGTACAAATTGCTGTTAATACCAG
TAAGTATGCTGAAAGTTATCGGATCCAGACCTACGCTGAGTATGTGGGAAAGAAGCAGGAAAGC
AAGCAGGTCAAGAGGAAGTGGACAGAAGACAGTTGGAAGGAGGTGGACAGAAAGCGGCCCCACG
TGCCGGGCCCCTGTTACCACACCAACAGCTTCACTGCAGCCGGCATAGTTGGAAAGAGAACTCT
GAGTCCCGACCCTCGGGAAGCTGGAGTGGTGGACAGAGAATCAGAGGGAATATCTGACCCGGAA
CTTGAACAGACGGATTACTGTGCAGACCCCCTCCCAGAGGGAAGGAAAAAGGCCAAGAAGTTAA
AAAGAATGAAGAAAGAGTTTTCCTTGGCAGGAAGTGCCTCAGATAGCCCTGCTGTGCTTTTTGA
AGTCCCCGACACGTGGTAA

hide sequence

RefSeq Acc Id:

XM_039086248 ⟹ XP_038942176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,055,749 (-)	NCBI
mRatBN7.2	10	1,410,636 - 1,548,572 (-)	NCBI

RefSeq Acc Id:

XM_039086249 ⟹ XP_038942177

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,055,744 (-)	NCBI
mRatBN7.2	10	1,410,636 - 1,548,572 (-)	NCBI

RefSeq Acc Id:

XM_039086250 ⟹ XP_038942178

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,055,744 (-)	NCBI
mRatBN7.2	10	1,410,636 - 1,548,573 (-)	NCBI

RefSeq Acc Id:

XM_039086251 ⟹ XP_038942179

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,055,744 (-)	NCBI
mRatBN7.2	10	1,410,636 - 1,548,572 (-)	NCBI

RefSeq Acc Id:

XM_039086253 ⟹ XP_038942181

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,980,461 - 2,055,744 (-)	NCBI
mRatBN7.2	10	1,477,581 - 1,548,572 (-)	NCBI

RefSeq Acc Id:

XM_039086254 ⟹ XP_038942182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,032,572 (-)	NCBI
mRatBN7.2	10	1,410,636 - 1,520,617 (-)	NCBI

RefSeq Acc Id:

XM_039086255 ⟹ XP_038942183

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,016,458 (-)	NCBI
mRatBN7.2	10	1,410,636 - 1,509,278 (-)	NCBI

RefSeq Acc Id:

XM_039086256 ⟹ XP_038942184

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,985,814 - 2,055,744 (-)	NCBI
mRatBN7.2	10	1,478,633 - 1,548,571 (-)	NCBI

RefSeq Acc Id:

XM_063269271 ⟹ XP_063125341

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,055,741 (-)	NCBI

RefSeq Acc Id:

XM_063269272 ⟹ XP_063125342

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,055,742 (-)	NCBI

RefSeq Acc Id:

XM_063269273 ⟹ XP_063125343

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,055,741 (-)	NCBI

RefSeq Acc Id:

XM_063269274 ⟹ XP_063125344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,055,742 (-)	NCBI

RefSeq Acc Id:

XM_063269275 ⟹ XP_063125345

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,055,742 (-)	NCBI

RefSeq Acc Id:

XM_063269277 ⟹ XP_063125347

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,921,704 - 2,055,743 (-)	NCBI

RefSeq Acc Id:

XM_063269278 ⟹ XP_063125348

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	1,917,830 - 2,032,572 (-)	NCBI

RefSeq Acc Id:

XR_005489883

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	2,009,720 - 2,055,745 (-)	NCBI
mRatBN7.2	10	1,502,528 - 1,548,572 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001257344	(Get FASTA)	NCBI Sequence Viewer
	XP_038942176	(Get FASTA)	NCBI Sequence Viewer
	XP_038942177	(Get FASTA)	NCBI Sequence Viewer
	XP_038942178	(Get FASTA)	NCBI Sequence Viewer
	XP_038942179	(Get FASTA)	NCBI Sequence Viewer
	XP_038942181	(Get FASTA)	NCBI Sequence Viewer
	XP_038942182	(Get FASTA)	NCBI Sequence Viewer
	XP_038942183	(Get FASTA)	NCBI Sequence Viewer
	XP_038942184	(Get FASTA)	NCBI Sequence Viewer
	XP_063125341	(Get FASTA)	NCBI Sequence Viewer
	XP_063125342	(Get FASTA)	NCBI Sequence Viewer
	XP_063125343	(Get FASTA)	NCBI Sequence Viewer
	XP_063125344	(Get FASTA)	NCBI Sequence Viewer
	XP_063125345	(Get FASTA)	NCBI Sequence Viewer
	XP_063125347	(Get FASTA)	NCBI Sequence Viewer
	XP_063125348	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ADM86746	(Get FASTA)	NCBI Sequence Viewer
	EDL96165	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070962
	ENSRNOP00000070962.4
	ENSRNOP00000072539.3
	ENSRNOP00000073884
	ENSRNOP00000073884.4
	ENSRNOP00000100067
	ENSRNOP00000100067.1
	ENSRNOP00000100699
	ENSRNOP00000100699.1
	ENSRNOP00000101832.1

RefSeq Acc Id:

NP_001257344 ⟸ NM_001270415

- UniProtKB:

A0A0G2QC45 (UniProtKB/TrEMBL), A6K4E3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEIIRSNFKINLPKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDF
LLFQFGLCAFKYDHANSKHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFC
SGIPYLNQEEERQLREQFDEKRSQANGAGALTKCPVTIPEDQKKFIDQVIEKIEGFLQREEKRT
LELNPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYAKEQEE
LNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPVDLNEFKEMTTCVFPRLLDTKL
MASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFI
SMANYLGSLLSPPKTCVSARSKLIEPFFNKLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKE
WKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKQES
KQVKRKWTEDSWKEVDRKRPHVPGPCYHTNSFTAAGIVGKRTLSPDPREAGVVDRESEGISDPE
LEQTDYCADPLPEGRKKAKKLKRMKKEFSLAGSASDSPAVLFEVPDTW

hide sequence

Ensembl Acc Id:

ENSRNOP00000072539 ⟸ ENSRNOT00000084447

Ensembl Acc Id:

ENSRNOP00000073884 ⟸ ENSRNOT00000078421

Ensembl Acc Id:

ENSRNOP00000070962 ⟸ ENSRNOT00000083125

RefSeq Acc Id:	XP_038942178 ⟸ XM_039086250
- Peptide Label:	isoform X3
- UniProtKB:	A6K4E3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942177 ⟸ XM_039086249
- Peptide Label:	isoform X2
- UniProtKB:	A6K4E3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942179 ⟸ XM_039086251
- Peptide Label:	isoform X4
- UniProtKB:	A6K4E3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942176 ⟸ XM_039086248
- Peptide Label:	isoform X1
- UniProtKB:	A6K4E3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942182 ⟸ XM_039086254
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038942183 ⟸ XM_039086255
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038942181 ⟸ XM_039086253
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038942184 ⟸ XM_039086256
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063125345 ⟸ XM_063269275
- Peptide Label:	isoform X9
- UniProtKB:	A6K4E3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125344 ⟸ XM_063269274
- Peptide Label:	isoform X8
- UniProtKB:	A6K4E3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125342 ⟸ XM_063269272
- Peptide Label:	isoform X6
- UniProtKB:	A6K4E3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125341 ⟸ XM_063269271
- Peptide Label:	isoform X5
- UniProtKB:	A6K4E3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125343 ⟸ XM_063269273
- Peptide Label:	isoform X7
- UniProtKB:	A6K4E3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125348 ⟸ XM_063269278
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063125347 ⟸ XM_063269277
- Peptide Label:	isoform X10
- UniProtKB:	A6K4E3 (UniProtKB/TrEMBL), A0A0G2K386 (UniProtKB/TrEMBL), A0A0G2K6N8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000101832 ⟸ ENSRNOT00000152993

Ensembl Acc Id:

ENSRNOP00000100699 ⟸ ENSRNOT00000163464

Ensembl Acc Id:

ENSRNOP00000100067 ⟸ ENSRNOT00000140097

Protein Domains

R3H

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K6N8-F1-model_v2	AlphaFold	A0A0G2K6N8	1-642	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696928

Promoter ID:

EPDNEW_R7449

Type:

multiple initiation site

Name:

Parn_1

Description:

poly-specific ribonuclease

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	1,461,245 - 1,461,305	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565449	AgrOrtholog
BioCyc Gene	G2FUF-26226	BioCyc
Ensembl Genes	ENSRNOG00000002912	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000078421	ENTREZGENE
	ENSRNOT00000078421.4	UniProtKB/TrEMBL
	ENSRNOT00000083125	ENTREZGENE
	ENSRNOT00000083125.4	UniProtKB/TrEMBL
	ENSRNOT00000084447.3	UniProtKB/TrEMBL
	ENSRNOT00000140097	ENTREZGENE
	ENSRNOT00000140097.1	UniProtKB/TrEMBL
	ENSRNOT00000152993.1	UniProtKB/TrEMBL
	ENSRNOT00000163464	ENTREZGENE
	ENSRNOT00000163464.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.420.10	UniProtKB/TrEMBL
	3.30.70.330	UniProtKB/TrEMBL
	R3H-like domain	UniProtKB/TrEMBL
InterPro	CAF1_poly(A)_ribonucleases	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	PARN_R3H	UniProtKB/TrEMBL
	PolyA-riboNase_RNA_binding	UniProtKB/TrEMBL
	PolynucTfrase_RNaseH_fold	UniProtKB/TrEMBL
	R3H_dom_sf	UniProtKB/TrEMBL
	R3H_ss-bd	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RNase_CAF1	UniProtKB/TrEMBL
	RNaseH_sf	UniProtKB/TrEMBL
KEGG Report	rno:360464	UniProtKB/TrEMBL
NCBI Gene	360464	ENTREZGENE
PANTHER	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	UniProtKB/TrEMBL
	POLY(A)-SPECIFIC RIBONUCLEASE PARN	UniProtKB/TrEMBL
Pfam	CAF1	UniProtKB/TrEMBL
	RNA_bind	UniProtKB/TrEMBL
PhenoGen	Parn	PhenoGen
PROSITE	R3H	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002912	RatGTEx
Superfamily-SCOP	RNaseH_fold	UniProtKB/TrEMBL
	SSF54928	UniProtKB/TrEMBL
	SSF82708	UniProtKB/TrEMBL
UniProt	A0A0G2JZ98_RAT	UniProtKB/TrEMBL
	A0A0G2K386	ENTREZGENE
	A0A0G2K6N8	ENTREZGENE
	A0A0G2QC45	ENTREZGENE, UniProtKB/TrEMBL
	A0A8J8Y7Y5_RAT	UniProtKB/TrEMBL
	A0ABK0KZC2_RAT	UniProtKB/TrEMBL
	A0ABK0L5W2_RAT	UniProtKB/TrEMBL
	A0ABK0LCB0_RAT	UniProtKB/TrEMBL
	A6K4E3	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A0G2K386	UniProtKB/TrEMBL
	A0A0G2K6N8	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Parn	poly(A)-specific ribonuclease	Parn	poly(A)-specific ribonuclease (deadenylation nuclease)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Parn	poly(A)-specific ribonuclease (deadenylation nuclease)	RGD1565449_predicted	similar to Parn protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565449_predicted	similar to Parn protein (predicted)	LOC360464	similar to Parn protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC360464	similar to Parn protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)