D10Rat199 Marker Search Result - Rat Genome Database

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Marker: D10Rat199

Symbol: D10Rat199
Previously known as: R0221-A10; oxsts8720; 
RGD ID: 40034
Expected Size: 172 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2101,468,843 - 1,469,029 (+)MAPPERmRatBN7.2
Rnor_6.0101,381,054 - 1,381,239NCBIRnor6.0
Rnor_5.010278,166 - 278,351UniSTSRnor5.0
RGSC_v3.4101,867,586 - 1,867,772RGDRGSC3.4
RGSC_v3.4101,867,587 - 1,867,772UniSTSRGSC3.4
RGSC_v3.1101,867,486 - 1,867,790RGD
Celera10530,195 - 530,380UniSTS
FHH x ACI Map104.54UniSTS
FHH x ACI Map104.54RGD
Cytogenetic Map10q11UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Parn  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGCCAAATAATGATTGTTCCTTC
Reverse Primer CCTCCTCTGGCTTCTTGAGA
 
Template 
CCTGCAGGTCGACTCTAGAGGATCCCCCTTGAGGAAATCCAACACCCTCCTCTGGCTTCTTGAG
ACACCATACATATGCATATGTGCACATGTAACACACACACACACACACACACACACACACACAG
ACACACACCAATTAAACTAGAATAAACATTTTCTTAAAGTTGGCTTTCAAAGAATTTTCTAGTA
AGGAAGGAACAATCATTATTTGGCAACAAAATAGTATTTTAAAAAACAAACAAACAAACAACAC
ACTTTTAAACCATGGACATGAATGACCAAATTATGCTGTCGTTTTAGTGAAATACCACTAGGGT
ACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACA
ATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCG
ACTCACATTAATGCGTTGNC

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1565449Parnpoly(A)-specific ribonuclease1014106361548573Rat

Nucleotide Sequences
GenBank Nucleotide JH616888.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 360464 UniSTS
UniSTS 226310 UniSTS