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Gene: Dsn1 (DSN1 component of MIS12 kinetochore complex) Rattus norvegicus

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Symbol:

Dsn1

Name:

DSN1 component of MIS12 kinetochore complex

RGD ID:

1565179

Description:

Predicted to be involved in cell division and chromosome segregation. Predicted to act upstream of or within skeletal muscle satellite cell proliferation. Predicted to be located in kinetochore. Predicted to be part of MIS12/MIND type complex. Orthologous to human DSN1 (DSN1 component of MIS12 kinetochore complex); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DSN1 homolog, MIS12 kinetochore complex component; DSN1, MIND kinetochore complex component, homolog; DSN1, MIND kinetochore complex component, homolog (S. cerevisiae); DSN1, MIS12 kinetochore complex component; kinetochore-associated protein DSN1 homolog; LOC499933; MGC116180; similar to RIKEN cDNA 1700022L09

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	166,072,775 - 166,089,029 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	166,074,033 - 166,085,890 (-)	Ensembl				GRCr8
mRatBN7.2	3	145,652,741 - 145,668,025 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	145,652,737 - 145,665,856 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	149,479,403 - 149,491,260 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	157,977,892 - 157,989,744 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	155,717,666 - 155,729,510 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	153,101,020 - 153,115,326 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	153,101,036 - 153,114,520 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	158,598,732 - 158,611,011 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	147,575,110 - 147,586,968 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	144,362,164 - 144,374,022 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

colorectal cancer (ISO)

hepatocellular carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

carbon nanotube (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

diazinon (ISO)

dicrotophos (ISO)

dioxygen (ISO)

Enterolactone (ISO)

enzyme inhibitor (ISO)

flutamide (EXP)

FR900359 (ISO)

furan (EXP)

genistein (EXP)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methyl methanesulfonate (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

propanal (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (ISO)

trimellitic anhydride (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

chromosome segregation (IEA)

skeletal muscle satellite cell proliferation (ISO)

Cellular Component

fibrillar center (IEA,ISO)

kinetochore (IEA,ISO)

MIS12/MIND type complex (IEA,ISO)

nuclear body (IEA,ISO)

nucleoplasm (IEA,ISO)

outer kinetochore (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Over-expression of AURKA, SKA3 and DSN1 contributes to colorectal adenoma to carcinoma progression.	Chuang TP, etal., Oncotarget. 2016 Jul 19;7(29):45803-45818. doi: 10.18632/oncotarget.9960.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
5.	Elevated DSN1 expression is associated with poor survival in patients with hepatocellular carcinoma.	Sun C, etal., Hum Pathol. 2018 Nov;81:113-120. doi: 10.1016/j.humpath.2018.06.032. Epub 2018 Jul 3.

Additional References at PubMed

PMID:15371340	PMID:16585270

Genomics

Comparative Map Data

Dsn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	166,072,775 - 166,089,029 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	166,074,033 - 166,085,890 (-)	Ensembl				GRCr8
mRatBN7.2	3	145,652,741 - 145,668,025 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	145,652,737 - 145,665,856 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	149,479,403 - 149,491,260 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	157,977,892 - 157,989,744 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	155,717,666 - 155,729,510 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	153,101,020 - 153,115,326 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	153,101,036 - 153,114,520 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	158,598,732 - 158,611,011 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	147,575,110 - 147,586,968 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	144,362,164 - 144,374,022 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

DSN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	36,751,795 - 36,773,763 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	36,751,791 - 36,774,298 (-)	Ensembl			hg38	GRCh38
GRCh37	20	35,380,198 - 35,402,166 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	34,813,862 - 34,835,563 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	34,813,861 - 34,835,563	NCBI
Celera	20	32,087,712 - 32,109,752 (-)	NCBI		Celera
Cytogenetic Map	20	q11.23	NCBI
HuRef	20	32,116,840 - 32,138,884 (-)	NCBI		HuRef
CHM1_1	20	35,281,951 - 35,303,991 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	38,476,075 - 38,498,047 (-)	NCBI		T2T-CHM13v2.0

Dsn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	156,836,982 - 156,848,995 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	156,837,185 - 156,849,074 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	156,995,062 - 157,007,075 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	156,995,265 - 157,007,154 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	156,820,798 - 156,832,811 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	156,686,706 - 156,698,516 (-)	NCBI		MGSCv36	mm8
Celera	2	162,930,851 - 162,942,859 (-)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	77.89	NCBI

Dsn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	24,878,035 - 24,896,018 (+)	Ensembl
ChiLan1.0	NW_004955422	24,876,340 - 24,896,435 (+)	NCBI	ChiLan1.0	ChiLan1.0

DSN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	42,488,112 - 42,510,128 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	42,481,210 - 42,503,230 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	33,083,222 - 33,105,563 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	34,202,053 - 34,223,735 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	34,202,053 - 34,223,729 (-)	Ensembl			panPan2	panpan1.1

DSN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	25,506,954 - 25,523,409 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	25,507,667 - 25,523,155 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	25,152,621 - 25,168,599 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	26,204,555 - 26,220,531 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	26,204,405 - 26,220,288 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	25,482,726 - 25,498,705 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	25,582,494 - 25,598,740 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	26,072,339 - 26,088,326 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dsn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	174,411,961 - 174,426,798 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	4,322,675 - 4,337,506 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	4,322,709 - 4,337,405 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DSN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	39,990,624 - 40,017,365 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	39,992,769 - 40,017,388 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	45,435,426 - 45,457,148 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DSN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	57,511,171 - 57,525,241 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	57,511,366 - 57,527,088 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	533,022 - 551,858 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dsn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624842	2,738,734 - 2,760,783 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624842	2,738,739 - 2,762,968 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dsn1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	136,333,158 - 136,343,156 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dsn1
107 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	109
Count of miRNA genes:	83
Interacting mature miRNAs:	98
Transcripts:	ENSRNOT00000008254
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161799493	176036425	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	141508991	166376254	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	160357340	167835660	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	355	192	11	143	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC098027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008254 ⟹ ENSRNOP00000008255

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	166,074,033 - 166,085,890 (-)	Ensembl
mRatBN7.2 Ensembl	3	145,652,737 - 145,665,856 (-)	Ensembl
Rnor_6.0 Ensembl	3	153,101,036 - 153,114,520 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100568 ⟹ ENSRNOP00000091670

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	166,074,033 - 166,085,644 (-)	Ensembl
mRatBN7.2 Ensembl	3	145,653,995 - 145,665,647 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109507 ⟹ ENSRNOP00000091357

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	145,652,744 - 145,665,610 (-)	Ensembl

RefSeq Acc Id:

NM_001025768 ⟹ NP_001020939

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,074,032 - 166,085,890 (-)	NCBI
mRatBN7.2	3	145,653,994 - 145,665,853 (-)	NCBI
Rnor_6.0	3	153,102,273 - 153,114,500 (-)	NCBI
Rnor_5.0	3	158,598,732 - 158,611,011 (+)	NCBI
RGSC_v3.4	3	147,575,110 - 147,586,968 (-)	RGD
Celera	3	144,362,164 - 144,374,022 (-)	RGD

Sequence:

show sequence

CAGCGCGGAACCTGGAACTAGACTAACGGGGAAGACCACCCTCTGTGGTGACGCCCAGTCTGCA
GAGGATGACTTCGGTGACCAAATCAGAAGACCAGGGACCAACGATGTCGGAGACTCAGGATCGT
CCATTGCAACCAAGTCTCGAGCCTTTGGAAGCATTGCCTCGATCCTCTGCCTACCAGGAAATGA
TGGCACAAGGCACTTCAGAGGAACAAAACCACCTTGGCCGGAGCCCCAGAGAGGGGGAAGGTTG
TGGTGCTGACCCCCAGGAGGGACCTCAGTTGAGGTCCTTTCATTTGTCTCCTCAAGAACAGTCT
GCCCGTCACAGAGACAGAAGGCAGTCCTGGAGGCGAGCAAGCATGAAAGAGATAAACCGGCGGA
AGTCGTTGGCTCCTTTTCACCCGGGCATCACAGAGCTCAGCAGGTCAATCAGTATGAAGTTAGC
ACAGAGCCAACGGCTTGGCGCCCTCCTGCTCTCCAGCTTCCAGTTCTCTGTTGAAAAACTTGAA
CCTTTCTTAAAGAACACTAAGGACTTCAGCCTTGAATGTTTTAGAGCCAAAGCATCTTCTCTCT
CTGAAGAATTGAAACATTTTACAGACAGGCTGGGAAATGATGGAACTCTACAAAAATGTTTTGT
TGAAGATTCAAAAGAAAAAGCACCAGATTTCTCACTGGAAGCATCAGTAGCTGAGGTGAAAGAA
TATATAACAAAGTTTTCTTTAGAGCGTCAGGCCTGGGATCGGCTCTTACTGCAGTACCAGAACG
AGGTTCCACCTGAAGAGATGCCCAGAGGATCAACTGAAACCAAAATCAATGAAGTGAATGTGGA
CCCGGCAGCCTACCTCAGGTCTTCCCAGAAGGAAGTTCTGAACACGAAACCCGACTATCAGAGA
ATAGTGCAGAGTCAGAATGAAGTCTTTGCCTATATGGAATTAGTGATGGATGAGCTACAAGGAG
CAGTGAAGCAGCTGCAAGCCTTCATGGATGAAAGTACTCAGTACCTCCAGAAGGTGTCAGTACA
GCTCAAGAAGAGAAGTATGGAGCAGTTAGATTCTTCACCTGCTCGAAAACTGCTCAAGCTCCAT
CTACAGAGCTCATCTACCACCCAGTGATCAGGATCCTGTCAGGGATCTTACCTCACAGCACTCA
GCTGGGAAGTCCTGGCCCTGCAGCACTTTCACTGTTCCTGAGTGACTGCATATCTGTATCCAGA
AGAGAGTGTTAAGGACACTTTTGTAATAGTGTGCAAGATGCTTAAAATGACCTTCAGAACCATT
GCTCTAAATATCTTCATGGTCAGCGCTTTTCATCCCATAAAACGATCCAAAGACATCTAGAACT
AACCTTAAGGCAATGTTTTAGGGGCCACGGTAGATTGTCGGCATAAAAGACTGATGCTAAAGTT
TGAGTGTGGGACTAAAGGCAGATTATAGGAGGTTGTCACATAACGGGTGTGCGTGGACACTTTT
AAAATGTCCATTTTCTGAAGTGTCCTAATGTCTGTAGAGTGCTTTAGTTTTTAATATTGAATTG
AATTCCTTTGGGAATTCCCCTGCCTCCCTAAGAATTGAGCCCAGGGCTTTGTGAGTACTAGGGA
AACACTCTCATGAAGCTGCATCTTCAGTCCCCATGGTTTTTGTCTTTTTAAGTTCTAGTTCCTG
AGTGGCACCTGGACCATAATAGCCCTGTGAGCTGTATTTTAAAAACCATGTGTTGTCATTTCCT
GTGACTGAGATATAGTCACTTGACCTCTTATCTAGAACATTAGAAGGGTGTTAGAAGCTATGCT
GTAAGGACACTGTAAGGATTCGTTTAAAGAGTAAAAGCCTAGAACAATGTTGTTGAAGATTTAA
AAATGAGTAGACAGTAGTTAATGAGGTGAAAAAGCTAATATCTAATTTGGAATACCACATGGAG
AGCTCAAGCAGATACATATAAAGTCTGGATTAGAAATAAATTTAAGTTATGTCTAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006235375 ⟹ XP_006235437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,072,775 - 166,085,827 (-)	NCBI
mRatBN7.2	3	145,652,741 - 145,665,780 (-)	NCBI
Rnor_6.0	3	153,101,020 - 153,114,427 (-)	NCBI
Rnor_5.0	3	158,598,732 - 158,611,011 (+)	NCBI

Sequence:

show sequence

TTGGATTTATTGTTTCAGGAACGGGGAAGGGGAGCTGGGCTGGACGGGCGTCACTCTGGGGTTC
GGAAGTCGAAGACATTTCCCCGGATGTGGTTCGCTGTCCCAGATCCGCCTCTCTGCCCAGCCCA
CCCTCGGCTCCCAGCTGCCGGGCCCCGGGGCTAGGAGACATTCTCGTGACAGGACACCTGAAGA
AAGGCCACTCCTCTCTGCCCGGCACTGTTGGCATCCCTGACTCCTGATAGTGGCCACGGACAGG
GCAGAGGGCTGGGGTGGCAGCAAGAGTTGCATTGCTGTGCTCCGGGCTGGCTGCCTACGGAACC
GGGGCCTTCTGATACAGTATCTTACTCAGAGTTGTGGAATGAGTTGAATGGCATGATGATGACT
TCGGTGACCAAATCAGAAGACCAGGGACCAACGATGTCGGAGACTCAGGATCGTCCATTGCAAC
CAAGTCTCGAGCCTTTGGAAGCATTGCCTCGATCCTCTGCCTACCAGGAAATGATGGCACAAGG
CACTTCAGAGGAACAAAACCACCTTGGCCGGAGCCCCAGAGAGGGGGAAGGTTGTGGTGCTGAC
CCCCAGGAGGGACCTCAGTTGAGGTCCTTTCATTTGTCTCCTCAAGAACAGTCTGCCCGTCACA
GAGACAGAAGGCAGTCCTGGAGGCGAGCAAGCATGAAAGAGATAAACCGGCGGAAGTCGTTGGC
TCCTTTTCACCCGGGCATCACAGAGCTCAGCAGGTCAATCAGTATGAAGTTAGCACAGAGCCAA
CGGCTTGGCGCCCTCCTGCTCTCCAGCTTCCAGTTCTCTGTTGAAAAACTTGAACCTTTCTTAA
AGAACACTAAGGACTTCAGCCTTGAATGTTTTAGAGCCAAAGCATCTTCTCTCTCTGAAGAATT
GAAACATTTTACAGACAGGCTGGGAAATGATGGAACTCTACAAAAATGTTTTGTTGAAGATTCA
AAAGAAAAAGCACCAGATTTCTCACTGGAAGCATCAGTAGCTGAGGTGAAAGAATATATAACAA
AGTTTTCTTTAGAGCGTCAGGCCTGGGATCGGCTCTTACTGCAGTACCAGAACGAGGTTCCACC
TGAAGAGATGCCCAGAGGATCAACTGAAACCAAAATCAATGAAGTGAATGTGGACCCGGCAGCC
TACCTCAGGTCTTCCCAGAAGGAAGTTCTGAACACGAAACCCGACTATCAGAGAATAGTGCAGA
GTCAGAATGAAGTCTTTGCCTATATGGAATTAGTGATGGATGAGCTACAAGGAGCAGTGAAGCA
GCTGCAAGCCTTCATGGATGAAAGTACTCAGTACCTCCAGAAGGTGTCAGTACAGCTCAAGAAG
AGAAGTATGGAGCAGTTAGATTCTTCACCTGCTCGAAAACTGCTCAAGCTCCATCTACAGAGCT
CATCTACCACCCAGTGATCAGGATCCTGTCAGGGATCTTACCTCACAGCACTCAGCTGGGAAGT
CCTGGCCCTGCAGCACTTTCACTGTTCCTGAGTGACTGCATATCTGTATCCAGAAGAGAGTGTT
AAGGACACTTTTGTAATAGTGTGCAAGATGCTTAAAATGACCTTCAGAACCATTGCTCTAAATA
TCTTCATGGTCAGCGCTTTTCATCCCATAAAACGATCCAAAGACATCTAGAACTAACCTTAAGG
CAATGTTTTAGGGGCCACGGTAGATTGTCGGCATAAAAGACTGATGCTAAAGTTTGAGTGTGGG
ACTAAAGGCAGATTATAGGAGGTTGTCACATAACGGGTGTGCGTGGACACTTTTAAAATGTCCA
TTTTCTGAAGTGTCCTAATGTCTGTAGAGTGCTTTAGTTTTTAATATTGAATTGAATTCCTTTG
GGAATTCCCCTGCCTCCCTAAGAATTGAGCCCAGGGCTTTGTGAGTACTAGGGAAACACTCTCA
TGAAGCTGCATCTTCAGTCCCCATGGTTTTTGTCTTTTTAAGTTCTAGTTCCTGAGTGGCACCT
GGACCATAATAGCCCTGTGAGCTGTATTTTAAAAACCATGTGTTGTCATTTCCTGTGACTGAGA
TATAGTCACTTGACCTCTTATCTAGAACATTAGAAGGGTGTTAGAAGCTATGCTGTAAGGACAC
TGTAAGGATTCGTTTAAAGAGTAAAAGCCTAGAACAATGTTGTTGAAGATTTAAAAATGAGTAG
ACAGTAGTTAATGAGGTGAAAAAGCTAATATCTAATTTGGAATACCACATGGAGAGCTCAAGCA
GATACATATAAAGTCTGGATTAGAAATAAATTTAAGTTATGTCTAGCTGTTGGAGTGATGTTTT
TGTACATTATGTGACAGTGTGTCTCTGCCTTTCCCTGCCTTCCTAAAGCACCTTCTGATTGGTT
AAAATAAAAAGCCTCTGGCCTACAGCAAAAGGCAGGATAGTAAAGTAGAACATCCAGAAAGAGG
AACTGGGAAGAAGTCAGGCGCATGAGATTTGCCACCCAAAGTGGGATGTATGAAACTGAGGCAA
GGTAACCAGCCGTTCAGCAGACATGGAATAGTATAAGTGGGCTAATATAAGTTAAGAGCCAGTT
GGTGAACTAGAGCCAGTTGGGGAACTAGCCTAAGCCAAGGCCAAAAGCATTATAAGTATAGCTT
CTTTGGGAAAGCATCAAATGCTAGATGTCGCCAGTGCAGATGGAGGACCAAGGGCTCAGGATTA
GGAATCTGCAGCAGCTTCTGTGGAGGATACAGCAGTGGTTGTGGTCGAGGCCTTGAGGACCATG
GAGGTAAAGTTGAAGACAAGGAGTAGATCCCCATCACCAAGCTGGGCCGCCTTGAAGATCAAGT
CCTTGAAAGAGATCTACCTGTTCTCCCTGCCCATTAAGGAATCTGATTATTGACTTTCCTGGGC
ACATCCCTAAAGGATGAGGTCTGAAGATCCTGCCGGGACAGAAGCAGCATCCACTGGTCAGCAG
ACCGACTTAAGGCTTTTGTGGCTACTGGGGACTACAGTGGTCACATTGGTTTTGGTGTTAAGTG
CTCTCCAAGGAGGTACCCACTGCCATCTGAGGGGCCATCATTTTGTCCAAGATCCCATCATCAT
CCCTGTGCAGAGAGGGTACGGGGGAACAAGATTGACAAGCCCCACACTGTTCCATGCAAGGTGA
CAGGCTGCTGTGACTCTGTACATCTCATCCCTGCCCCCAGAGGCACTGGCATTGCCTGTTCAGT
GCTGAAAAGGCTACTGATGATGGCCGGTATAGATGACTGCTACACATCAGCCAGGGGCTGCACT
GCCACCCTGGACAACTTTGCCAAGGCCACCTTTGATGCCACCTCCAAGACCTACAGCTACCTGA
CCCCCAACCTCTGGAAAGAGACTGATCCTTATCTGGAAAGAACAAGTTTCCTTATCAGGGATTT
CACTGATCATCTTGTGAAAACTCACACCAGAGTCTTTGTTCAGAGAACCCAGGCTCCAGTTGTG
GCTACAACCTAAGGCTTTTTATACAAGAAAAATAAAGTGAATTAAGTCTGATAATAAATAAATA
AATAAATAAATAAATAAA

hide sequence

RefSeq Acc Id:

XM_006235376 ⟹ XP_006235438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,072,775 - 166,089,029 (-)	NCBI
mRatBN7.2	3	145,652,741 - 145,668,018 (-)	NCBI
Rnor_6.0	3	153,101,020 - 153,115,326 (-)	NCBI
Rnor_5.0	3	158,598,732 - 158,611,011 (+)	NCBI

Sequence:

show sequence

CCTCAACCGCACAGAGATCCCTGTGTCTGTTTTCCCAGTACTGGGATTAAAGGCATGCGCCACC
ACAACTGGCCCTGTGGACTCTTTCGTACTACTCTCAATTCACAAGGTTCAGATCTGAAAGGAAT
CACTTCATTGATGTGTGGGGGCATTCCGATGCCTCTATATCTTGTCCTGAAGAAGACCCTTCCA
GGCATGAGACAATGGAGCAGGAATGGGTTGGGCTCCTGGGAGCACTGAACATCTGGGGTCAACA
TAGAAGGGTAGAAAGAGAAAGAAAAGGCTTTCCAGGCAAAAAGCATGCTCGAACAAAGGAGCAG
GGGCAAGAATTGGCATGGGGTGGCAGCAGTAGGGTGGCCTACAGTATTAACACTGGCGAGGGGT
GTACTTGAAATTTGCTGGAGGCTTAAGGGAACATGAGAGAGGCCCGTGGAGCAGGAGTAGGTAG
TCAGGGGACAAACTGAGCTCGGAGCTCCAGTTTTCCCCGGAGAAAGTCACTGTTCACACTTTTG
GAGAAAGAGATAGATGGAGAAGTGATGGCCCGGAACCGGAGTACAGCCCCAGATTCTGACTTTC
ACAGGTAGGATTACGGCAGGAAAATCACCAAACTGCTGCTTTGGAGAGGACAATCCCCCGGTCT
GGATGTAGATACAAAGGTAATTAATCCGGATTTGGGTGAAAACATTAGGACTAGGTGGGCTAAA
GGCGAGAACGTTGAACCACAGTACGCATGCGCTCCAGGAGGCAGGGGGTGGTGCCTGCGAGCGC
GGGAGCCGTACGCCGCGCATGCGCAGTTATTCGGCGGGAGTTTCGGAAGTAGCTGCGGCAGCGC
GGAACCTGGAACTAGACTAACGGGGAAGACCACCCTCTGTGGTGACGCCCAGTCTGCAGAGTTC
TCGTAGACAGCAGTCAGTGACCCCTGCCAACAATCGGCTGCAAGCGAGGGCAGTTGAAGCATGA
GGCCTGTTATGGGATAGTGAAACCCCGTGAGACTGGAGCCGGAATGTGCAGAACAGATCACCTC
ATTTTCCTGTTTTCCTCTTTTCATCCAGGATGACTTCGGTGACCAAATCAGAAGACCAGGGACC
AACGATGTCGGAGACTCAGGATCGTCCATTGCAACCAAGTCTCGAGCCTTTGGAAGCATTGCCT
CGATCCTCTGCCTACCAGGAAATGATGGCACAAGGCACTTCAGAGGAACAAAACCACCTTGGCC
GGAGCCCCAGAGAGGGGGAAGGTTGTGGTGCTGACCCCCAGGAGGGACCTCAGTTGAGGTCCTT
TCATTTGTCTCCTCAAGAACAGTCTGCCCGTCACAGAGACAGAAGGCAGTCCTGGAGGCGAGCA
AGCATGAAAGAGATAAACCGGCGGAAGTCGTTGGCTCCTTTTCACCCGGGCATCACAGAGCTCA
GCAGGTCAATCAGTATGAAGTTAGCACAGAGCCAACGGCTTGGCGCCCTCCTGCTCTCCAGCTT
CCAGTTCTCTGTTGAAAAACTTGAACCTTTCTTAAAGAACACTAAGGACTTCAGCCTTGAATGT
TTTAGAGCCAAAGCATCTTCTCTCTCTGAAGAATTGAAACATTTTACAGACAGGCTGGGAAATG
ATGGAACTCTACAAAAATGTTTTGTTGAAGATTCAAAAGAAAAAGCACCAGATTTCTCACTGGA
AGCATCAGTAGCTGAGGTGAAAGAATATATAACAAAGTTTTCTTTAGAGCGTCAGGCCTGGGAT
CGGCTCTTACTGCAGTACCAGAACGAGGTTCCACCTGAAGAGATGCCCAGAGGATCAACTGAAA
CCAAAATCAATGAAGTGAATGTGGACCCGGCAGCCTACCTCAGGTCTTCCCAGAAGGAAGTTCT
GAACACGAAACCCGACTATCAGAGAATAGTGCAGAGTCAGAATGAAGTCTTTGCCTATATGGAA
TTAGTGATGGATGAGCTACAAGGAGCAGTGAAGCAGCTGCAAGCCTTCATGGATGAAAGTACTC
AGTACCTCCAGAAGGTGTCAGTACAGCTCAAGAAGAGAAGTATGGAGCAGTTAGATTCTTCACC
TGCTCGAAAACTGCTCAAGCTCCATCTACAGAGCTCATCTACCACCCAGTGATCAGGATCCTGT
CAGGGATCTTACCTCACAGCACTCAGCTGGGAAGTCCTGGCCCTGCAGCACTTTCACTGTTCCT
GAGTGACTGCATATCTGTATCCAGAAGAGAGTGTTAAGGACACTTTTGTAATAGTGTGCAAGAT
GCTTAAAATGACCTTCAGAACCATTGCTCTAAATATCTTCATGGTCAGCGCTTTTCATCCCATA
AAACGATCCAAAGACATCTAGAACTAACCTTAAGGCAATGTTTTAGGGGCCACGGTAGATTGTC
GGCATAAAAGACTGATGCTAAAGTTTGAGTGTGGGACTAAAGGCAGATTATAGGAGGTTGTCAC
ATAACGGGTGTGCGTGGACACTTTTAAAATGTCCATTTTCTGAAGTGTCCTAATGTCTGTAGAG
TGCTTTAGTTTTTAATATTGAATTGAATTCCTTTGGGAATTCCCCTGCCTCCCTAAGAATTGAG
CCCAGGGCTTTGTGAGTACTAGGGAAACACTCTCATGAAGCTGCATCTTCAGTCCCCATGGTTT
TTGTCTTTTTAAGTTCTAGTTCCTGAGTGGCACCTGGACCATAATAGCCCTGTGAGCTGTATTT
TAAAAACCATGTGTTGTCATTTCCTGTGACTGAGATATAGTCACTTGACCTCTTATCTAGAACA
TTAGAAGGGTGTTAGAAGCTATGCTGTAAGGACACTGTAAGGATTCGTTTAAAGAGTAAAAGCC
TAGAACAATGTTGTTGAAGATTTAAAAATGAGTAGACAGTAGTTAATGAGGTGAAAAAGCTAAT
ATCTAATTTGGAATACCACATGGAGAGCTCAAGCAGATACATATAAAGTCTGGATTAGAAATAA
ATTTAAGTTATGTCTAGCTGTTGGAGTGATGTTTTTGTACATTATGTGACAGTGTGTCTCTGCC
TTTCCCTGCCTTCCTAAAGCACCTTCTGATTGGTTAAAATAAAAAGCCTCTGGCCTACAGCAAA
AGGCAGGATAGTAAAGTAGAACATCCAGAAAGAGGAACTGGGAAGAAGTCAGGCGCATGAGATT
TGCCACCCAAAGTGGGATGTATGAAACTGAGGCAAGGTAACCAGCCGTTCAGCAGACATGGAAT
AGTATAAGTGGGCTAATATAAGTTAAGAGCCAGTTGGTGAACTAGAGCCAGTTGGGGAACTAGC
CTAAGCCAAGGCCAAAAGCATTATAAGTATAGCTTCTTTGGGAAAGCATCAAATGCTAGATGTC
GCCAGTGCAGATGGAGGACCAAGGGCTCAGGATTAGGAATCTGCAGCAGCTTCTGTGGAGGATA
CAGCAGTGGTTGTGGTCGAGGCCTTGAGGACCATGGAGGTAAAGTTGAAGACAAGGAGTAGATC
CCCATCACCAAGCTGGGCCGCCTTGAAGATCAAGTCCTTGAAAGAGATCTACCTGTTCTCCCTG
CCCATTAAGGAATCTGATTATTGACTTTCCTGGGCACATCCCTAAAGGATGAGGTCTGAAGATC
CTGCCGGGACAGAAGCAGCATCCACTGGTCAGCAGACCGACTTAAGGCTTTTGTGGCTACTGGG
GACTACAGTGGTCACATTGGTTTTGGTGTTAAGTGCTCTCCAAGGAGGTACCCACTGCCATCTG
AGGGGCCATCATTTTGTCCAAGATCCCATCATCATCCCTGTGCAGAGAGGGTACGGGGGAACAA
GATTGACAAGCCCCACACTGTTCCATGCAAGGTGACAGGCTGCTGTGACTCTGTACATCTCATC
CCTGCCCCCAGAGGCACTGGCATTGCCTGTTCAGTGCTGAAAAGGCTACTGATGATGGCCGGTA
TAGATGACTGCTACACATCAGCCAGGGGCTGCACTGCCACCCTGGACAACTTTGCCAAGGCCAC
CTTTGATGCCACCTCCAAGACCTACAGCTACCTGACCCCCAACCTCTGGAAAGAGACTGATCCT
TATCTGGAAAGAACAAGTTTCCTTATCAGGGATTTCACTGATCATCTTGTGAAAACTCACACCA
GAGTCTTTGTTCAGAGAACCCAGGCTCCAGTTGTGGCTACAACCTAAGGCTTTTTATACAAGAA
AAATAAAGTGAATTAAGTCTGATAATAAATAAATAAATAAATAAATAAATAAA

hide sequence

RefSeq Acc Id:

XM_039105706 ⟹ XP_038961634

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,072,775 - 166,085,827 (-)	NCBI
mRatBN7.2	3	145,652,741 - 145,665,780 (-)	NCBI

RefSeq Acc Id:

XM_039105707 ⟹ XP_038961635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,072,775 - 166,089,029 (-)	NCBI
mRatBN7.2	3	145,652,741 - 145,668,023 (-)	NCBI

RefSeq Acc Id:

XM_063284393 ⟹ XP_063140463

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,072,775 - 166,089,029 (-)	NCBI

RefSeq Acc Id:

XM_063284394 ⟹ XP_063140464

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,072,775 - 166,089,029 (-)	NCBI

RefSeq Acc Id:

XM_063284395 ⟹ XP_063140465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,077,480 - 166,089,029 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020939	(Get FASTA)	NCBI Sequence Viewer
	NP_001415612	(Get FASTA)	NCBI Sequence Viewer
	NP_001415613	(Get FASTA)	NCBI Sequence Viewer
	NP_001415614	(Get FASTA)	NCBI Sequence Viewer
	XP_006235437	(Get FASTA)	NCBI Sequence Viewer
	XP_006235438	(Get FASTA)	NCBI Sequence Viewer
	XP_038961634	(Get FASTA)	NCBI Sequence Viewer
	XP_038961635	(Get FASTA)	NCBI Sequence Viewer
	XP_063140463	(Get FASTA)	NCBI Sequence Viewer
	XP_063140464	(Get FASTA)	NCBI Sequence Viewer
	XP_063140465	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH98027	(Get FASTA)	NCBI Sequence Viewer
	EDL96704	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008255
	ENSRNOP00000008255.4
	ENSRNOP00000091670
	ENSRNOP00000091670.1

RefSeq Acc Id:

NP_001020939 ⟸ NM_001025768

- UniProtKB:

Q4V7C0 (UniProtKB/TrEMBL), A6JWQ5 (UniProtKB/TrEMBL), A0A8I6ADJ6 (UniProtKB/TrEMBL), F7F478 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSVTKSEDQGPTMSETQDRPLQPSLEPLEALPRSSAYQEMMAQGTSEEQNHLGRSPREGEGCG
ADPQEGPQLRSFHLSPQEQSARHRDRRQSWRRASMKEINRRKSLAPFHPGITELSRSISMKLAQ
SQRLGALLLSSFQFSVEKLEPFLKNTKDFSLECFRAKASSLSEELKHFTDRLGNDGTLQKCFVE
DSKEKAPDFSLEASVAEVKEYITKFSLERQAWDRLLLQYQNEVPPEEMPRGSTETKINEVNVDP
AAYLRSSQKEVLNTKPDYQRIVQSQNEVFAYMELVMDELQGAVKQLQAFMDESTQYLQKVSVQL
KKRSMEQLDSSPARKLLKLHLQSSSTTQ

hide sequence

RefSeq Acc Id:

XP_006235438 ⟸ XM_006235376

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTSVTKSEDQGPTMSETQDRPLQPSLEPLEALPRSSAYQEMMAQGTSEEQNHLGRSPREGEGCG
ADPQEGPQLRSFHLSPQEQSARHRDRRQSWRRASMKEINRRKSLAPFHPGITELSRSISMKLAQ
SQRLGALLLSSFQFSVEKLEPFLKNTKDFSLECFRAKASSLSEELKHFTDRLGNDGTLQKCFVE
DSKEKAPDFSLEASVAEVKEYITKFSLERQAWDRLLLQYQNEVPPEEMPRGSTETKINEVNVDP
AAYLRSSQKEVLNTKPDYQRIVQSQNEVFAYMELVMDELQGAVKQLQAFMDESTQYLQKVSVQL
KKRSMEQLDSSPARKLLKLHLQSSSTTQ

hide sequence

RefSeq Acc Id:

XP_006235437 ⟸ XM_006235375

- Peptide Label:

isoform X1

- Sequence:

show sequence

MMMTSVTKSEDQGPTMSETQDRPLQPSLEPLEALPRSSAYQEMMAQGTSEEQNHLGRSPREGEG
CGADPQEGPQLRSFHLSPQEQSARHRDRRQSWRRASMKEINRRKSLAPFHPGITELSRSISMKL
AQSQRLGALLLSSFQFSVEKLEPFLKNTKDFSLECFRAKASSLSEELKHFTDRLGNDGTLQKCF
VEDSKEKAPDFSLEASVAEVKEYITKFSLERQAWDRLLLQYQNEVPPEEMPRGSTETKINEVNV
DPAAYLRSSQKEVLNTKPDYQRIVQSQNEVFAYMELVMDELQGAVKQLQAFMDESTQYLQKVSV
QLKKRSMEQLDSSPARKLLKLHLQSSSTTQ

hide sequence

Ensembl Acc Id:

ENSRNOP00000008255 ⟸ ENSRNOT00000008254

RefSeq Acc Id:	XP_038961635 ⟸ XM_039105707
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038961634 ⟸ XM_039105706
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000091670 ⟸ ENSRNOT00000100568

Ensembl Acc Id:

ENSRNOP00000091357 ⟸ ENSRNOT00000109507

RefSeq Acc Id:	XP_063140463 ⟸ XM_063284393
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063140464 ⟸ XM_063284394
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063140465 ⟸ XM_063284395
- Peptide Label:	isoform X6

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V7C0-F1-model_v2	AlphaFold	Q4V7C0	1-348	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692606

Promoter ID:

EPDNEW_R3131

Type:

multiple initiation site

Name:

Dsn1_1

Description:

DSN1 homolog, MIS12 kinetochore complex component

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	153,114,530 - 153,114,590	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565179	AgrOrtholog
BioCyc Gene	G2FUF-47068	BioCyc
Ensembl Genes	ENSRNOG00000006236	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008254	ENTREZGENE
	ENSRNOT00000008254.8	UniProtKB/TrEMBL
	ENSRNOT00000100568	ENTREZGENE
	ENSRNOT00000100568.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7456020	IMAGE-MGC_LOAD
InterPro	Mtw1_DSN1	UniProtKB/TrEMBL
KEGG Report	rno:499933	UniProtKB/TrEMBL
MGC_CLONE	MGC:116180	IMAGE-MGC_LOAD
NCBI Gene	499933	ENTREZGENE
PANTHER	KINETOCHORE-ASSOCIATED PROTEIN DSN1 HOMOLOG	UniProtKB/TrEMBL
	PTHR14778	UniProtKB/TrEMBL
Pfam	Mis12_component	UniProtKB/TrEMBL
PhenoGen	Dsn1	PhenoGen
RatGTEx	ENSRNOG00000006236	RatGTEx
UniProt	A0A8I6ADJ6	ENTREZGENE
	A0A8I6AFX7	ENTREZGENE, UniProtKB/TrEMBL
	A6JWQ5	ENTREZGENE, UniProtKB/TrEMBL
	F7F478	ENTREZGENE, UniProtKB/TrEMBL
	Q4V7C0	ENTREZGENE
UniProt Secondary	Q4V7C0	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-10	Dsn1	DSN1 component of MIS12 kinetochore complex	Dsn1	DSN1 homolog, MIS12 kinetochore complex component	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-09	Dsn1	DSN1 homolog, MIS12 kinetochore complex component	Dsn1	DSN1, MIS12 kinetochore complex component	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-07-10	Dsn1	DSN1, MIS12 kinetochore complex component	Dsn1	DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Dsn1	DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)	LOC499933	similar to RIKEN cDNA 1700022L09	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC499933	similar to RIKEN cDNA 1700022L09			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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