DSN1 (DSN1 component of MIS12 kinetochore complex) - Rat Genome Database

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Gene: DSN1 (DSN1 component of MIS12 kinetochore complex) Sus scrofa
Analyze
Symbol: DSN1
Name: DSN1 component of MIS12 kinetochore complex
RGD ID: 14292779
Description: INVOLVED IN skeletal muscle satellite cell proliferation (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); focal epilepsy (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytosol (inferred); fibrillar center (inferred); kinetochore (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DSN1 homolog, MIS12 kinetochore complex component; DSN1, MIND kinetochore complex component, homolog; kinetochore-associated protein DSN1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1739,990,624 - 40,017,365 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11739,992,769 - 40,017,388 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21745,435,426 - 45,457,148 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DSN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1739,990,624 - 40,017,365 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11739,992,769 - 40,017,388 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21745,435,426 - 45,457,148 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DSN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382036,751,795 - 36,773,763 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2036,751,791 - 36,773,818 (-)EnsemblGRCh38hg38GRCh38
GRCh372035,380,198 - 35,402,166 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362034,813,862 - 34,835,563 (-)NCBINCBI36Build 36hg18NCBI36
Build 342034,813,861 - 34,835,563NCBI
Celera2032,087,712 - 32,109,752 (-)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2032,116,840 - 32,138,884 (-)NCBIHuRef
CHM1_12035,281,951 - 35,303,991 (-)NCBICHM1_1
T2T-CHM13v2.02038,476,075 - 38,498,047 (-)NCBIT2T-CHM13v2.0
Dsn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392156,836,982 - 156,848,995 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2156,837,185 - 156,849,074 (-)EnsemblGRCm39 Ensembl
GRCm382156,995,062 - 157,007,075 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,995,265 - 157,007,154 (-)EnsemblGRCm38mm10GRCm38
MGSCv372156,820,798 - 156,832,811 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362156,686,706 - 156,698,516 (-)NCBIMGSCv36mm8
Celera2162,930,851 - 162,942,859 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.89NCBI
Dsn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83166,072,775 - 166,089,029 (-)NCBIGRCr8
mRatBN7.23145,652,741 - 145,668,025 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3145,652,737 - 145,665,856 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3149,479,403 - 149,491,260 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,977,892 - 157,989,744 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03155,717,666 - 155,729,510 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03153,101,020 - 153,115,326 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3153,101,036 - 153,114,520 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03158,598,732 - 158,611,011 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43147,575,110 - 147,586,968 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3144,362,164 - 144,374,022 (-)NCBICelera
Cytogenetic Map3q42NCBI
Dsn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542224,876,340 - 24,896,435 (+)NCBIChiLan1.0ChiLan1.0
DSN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22142,488,112 - 42,510,128 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12042,481,210 - 42,503,230 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02033,083,222 - 33,105,563 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12034,202,053 - 34,223,735 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2034,202,053 - 34,223,729 (-)Ensemblpanpan1.1panPan2
DSN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12425,506,954 - 25,523,409 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2425,507,667 - 25,523,155 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2425,152,621 - 25,168,599 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02426,204,555 - 26,220,531 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2426,204,405 - 26,220,288 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12425,482,726 - 25,498,705 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02425,582,494 - 25,598,740 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02426,072,339 - 26,088,326 (-)NCBIUU_Cfam_GSD_1.0
Dsn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640174,411,961 - 174,426,798 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365614,322,675 - 4,337,506 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365614,322,709 - 4,337,405 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DSN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1257,511,171 - 57,525,241 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl257,511,366 - 57,527,088 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666054533,022 - 551,858 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dsn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248422,738,734 - 2,760,783 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248422,738,739 - 2,762,968 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DSN1
827 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000008013   ⟹   ENSSSCP00000007799
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1739,994,571 - 40,017,310 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000079133   ⟹   ENSSSCP00000061827
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1739,990,624 - 40,017,365 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000086223   ⟹   ENSSSCP00000070786
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1739,990,624 - 40,017,355 (-)Ensembl
RefSeq Acc Id: NM_001243366   ⟹   NP_001230295
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11739,996,423 - 40,017,356 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005672912   ⟹   XP_005672969
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11739,992,769 - 40,017,388 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005672914   ⟹   XP_005672971
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11739,992,769 - 40,017,388 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005672971   ⟸   XM_005672914
- Peptide Label: isoform X2
- UniProtKB: A0A5G2QDW2 (UniProtKB/TrEMBL),   A0A4X1TIL6 (UniProtKB/TrEMBL),   A0A8D1TKJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005672969   ⟸   XM_005672912
- Peptide Label: isoform X1
- UniProtKB: A0A8D1ZZA8 (UniProtKB/TrEMBL),   F1S478 (UniProtKB/TrEMBL),   A0A8D0MN28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001230295   ⟸   NM_001243366
- UniProtKB: A0A5G2RHG3 (UniProtKB/TrEMBL),   A0A8D0R9I1 (UniProtKB/TrEMBL),   A0A480MZF9 (UniProtKB/TrEMBL),   A0A4X1TJA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000061827   ⟸   ENSSSCT00000079133
RefSeq Acc Id: ENSSSCP00000070786   ⟸   ENSSSCT00000086223
RefSeq Acc Id: ENSSSCP00000007799   ⟸   ENSSSCT00000008013


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007323 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015012076 UniProtKB/TrEMBL
  ENSSSCG00025023899 UniProtKB/TrEMBL
  ENSSSCG00030020813 UniProtKB/TrEMBL
  ENSSSCG00040048328 UniProtKB/TrEMBL
  ENSSSCG00045007619 UniProtKB/TrEMBL
  ENSSSCG00050059423 UniProtKB/TrEMBL
  ENSSSCG00055019464 UniProtKB/TrEMBL
  ENSSSCG00060076013 UniProtKB/TrEMBL
  ENSSSCG00065069764 UniProtKB/TrEMBL
  ENSSSCG00070009285 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008013 ENTREZGENE
  ENSSSCT00000008013.5 UniProtKB/TrEMBL
  ENSSSCT00000079133 ENTREZGENE
  ENSSSCT00000079133.2 UniProtKB/TrEMBL
  ENSSSCT00000086223 ENTREZGENE
  ENSSSCT00000086223.2 UniProtKB/TrEMBL
  ENSSSCT00015016012.1 UniProtKB/TrEMBL
  ENSSSCT00015016067.1 UniProtKB/TrEMBL
  ENSSSCT00025032347.1 UniProtKB/TrEMBL
  ENSSSCT00025032419.1 UniProtKB/TrEMBL
  ENSSSCT00030028802.1 UniProtKB/TrEMBL
  ENSSSCT00040065097.1 UniProtKB/TrEMBL
  ENSSSCT00045012721.1 UniProtKB/TrEMBL
  ENSSSCT00045012760.1 UniProtKB/TrEMBL
  ENSSSCT00050080956.1 UniProtKB/TrEMBL
  ENSSSCT00055038066.1 UniProtKB/TrEMBL
  ENSSSCT00055038165.1 UniProtKB/TrEMBL
  ENSSSCT00060104145.1 UniProtKB/TrEMBL
  ENSSSCT00065095790.1 UniProtKB/TrEMBL
  ENSSSCT00065095793.1 UniProtKB/TrEMBL
  ENSSSCT00065095797.1 UniProtKB/TrEMBL
  ENSSSCT00070018096.1 UniProtKB/TrEMBL
  ENSSSCT00070018129.1 UniProtKB/TrEMBL
  ENSSSCT00070018133.1 UniProtKB/TrEMBL
InterPro Dsn1/Mis13 UniProtKB/TrEMBL
KEGG Report ssc:100152867 UniProtKB/TrEMBL
NCBI Gene DSN1 ENTREZGENE
PANTHER KINETOCHORE-ASSOCIATED PROTEIN DSN1 HOMOLOG UniProtKB/TrEMBL
  PTHR14778 UniProtKB/TrEMBL
Pfam MIS13 UniProtKB/TrEMBL
UniProt A0A480MZF9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TF28_PIG UniProtKB/TrEMBL
  A0A4X1TIL6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TJA3 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QDW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RHG3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0K3V1_PIG UniProtKB/TrEMBL
  A0A8D0MN28 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0R9I1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TKJ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZZ26_PIG UniProtKB/TrEMBL
  A0A8D1ZZA8 ENTREZGENE, UniProtKB/TrEMBL
  F1S478 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95764 ENTREZGENE