Poc1a (POC1 centriolar protein A) - Rat Genome Database

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Gene: Poc1a (POC1 centriolar protein A) Rattus norvegicus
Analyze
Symbol: Poc1a
Name: POC1 centriolar protein A
RGD ID: 1565004
Description: Predicted to be involved in cilium assembly. Predicted to act upstream of or within several processes, including growth plate cartilage chondrocyte development; non-motile cilium assembly; and positive regulation of centrosome duplication. Predicted to be located in centrosome; cytoplasm; and spindle pole. Predicted to be active in centriole and ciliary basal body. Orthologous to human POC1A (POC1 centriolar protein A); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC501048; POC1 centriolar protein homolog A; POC1 centriolar protein homolog A (Chlamydomonas); RGD1565004; similar to RIKEN cDNA 2510040D07; WD repeat domain 51A; WD repeat-containing protein 51A; Wdr51a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88115,801,335 - 115,869,812 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8115,801,396 - 115,870,392 (+)EnsemblGRCr8
mRatBN7.28106,922,058 - 106,991,678 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8106,922,978 - 106,991,089 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8112,545,008 - 112,613,494 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08110,744,171 - 110,812,663 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08108,586,976 - 108,655,457 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08114,982,764 - 115,050,844 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8114,986,326 - 115,050,728 (+)Ensemblrn6Rnor6.0
Rnor_5.08114,351,523 - 114,399,621 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48111,413,724 - 111,472,484 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8106,238,776 - 106,303,604 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-palmitoylglycerol  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
diallyl trisulfide  (ISO)
dibenz[a,h]anthracene  (ISO)
endosulfan  (EXP)
fenvalerate  (EXP)
fragrance  (ISO)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
isobutanol  (ISO)
leflunomide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
N-Nitrosopyrrolidine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propanal  (ISO)
quercitrin  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriole  (IBA,IEA,ISO)
centrosome  (IEA,ISO)
ciliary basal body  (IBA,IEA,ISO)
cytoplasm  (IEA,ISO)
spindle pole  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20008567   PMID:21399614   PMID:23015594   PMID:26496357  


Genomics

Comparative Map Data
Poc1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88115,801,335 - 115,869,812 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8115,801,396 - 115,870,392 (+)EnsemblGRCr8
mRatBN7.28106,922,058 - 106,991,678 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8106,922,978 - 106,991,089 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8112,545,008 - 112,613,494 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08110,744,171 - 110,812,663 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08108,586,976 - 108,655,457 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08114,982,764 - 115,050,844 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8114,986,326 - 115,050,728 (+)Ensemblrn6Rnor6.0
Rnor_5.08114,351,523 - 114,399,621 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48111,413,724 - 111,472,484 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8106,238,776 - 106,303,604 (+)NCBICelera
Cytogenetic Map8q32NCBI
POC1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,075,226 - 52,154,423 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,074,590 - 52,154,735 (-)Ensemblhg38GRCh38
GRCh37352,109,242 - 52,188,439 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,084,310 - 52,163,460 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34352,084,309 - 52,163,460NCBI
Celera352,088,573 - 52,168,026 (-)NCBICelera
Cytogenetic Map3p21.2NCBI
HuRef352,171,920 - 52,251,375 (-)NCBIHuRef
CHM1_1352,061,776 - 52,141,229 (-)NCBICHM1_1
T2T-CHM13v2.0352,108,129 - 52,187,328 (-)NCBIT2T-CHM13v2.0
Poc1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399106,156,177 - 106,227,721 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9106,158,260 - 106,227,720 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389106,279,443 - 106,350,522 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9106,281,061 - 106,350,521 (+)Ensemblmm10GRCm38
MGSCv379106,183,392 - 106,252,222 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369106,139,502 - 106,207,978 (+)NCBIMGSCv36mm8
Celera9105,908,630 - 105,977,178 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map957.46NCBI
Poc1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555323,708,274 - 3,789,797 (-)Ensembl
ChiLan1.0NW_0049555323,707,680 - 3,790,565 (-)NCBIChiLan1.0ChiLan1.0
POC1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2252,069,460 - 52,149,183 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1352,074,230 - 52,153,976 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0352,016,372 - 52,096,073 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1353,245,162 - 53,324,579 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl353,245,162 - 53,324,579 (-)EnsemblpanPan2panpan1.1
POC1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12037,592,080 - 37,659,783 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2037,544,186 - 37,681,725 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2037,573,632 - 37,641,356 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02037,942,700 - 38,010,430 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2037,942,727 - 38,034,072 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12037,306,357 - 37,374,069 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,714,859 - 37,782,566 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,999,937 - 38,067,663 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Poc1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560266,662,795 - 66,735,176 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365293,422,788 - 3,495,655 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365293,423,588 - 3,495,698 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POC1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1334,227,457 - 34,308,083 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11334,227,884 - 34,308,099 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21337,486,493 - 37,521,705 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POC1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12213,442,516 - 13,549,290 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2213,442,368 - 13,520,345 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041153,379,863 - 153,461,407 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Poc1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247305,881,637 - 5,959,126 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247305,882,812 - 5,958,966 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Poc1a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1897,586,089 - 97,653,241 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Poc1a
654 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:138
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000038166
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8111249511117802327Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000038166   ⟹   ENSRNOP00000038175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8115,801,396 - 115,850,221 (+)Ensembl
mRatBN7.2 Ensembl8106,922,978 - 106,991,089 (+)Ensembl
Rnor_6.0 Ensembl8114,986,326 - 115,050,728 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095943   ⟹   ENSRNOP00000079424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8115,801,747 - 115,869,699 (+)Ensembl
mRatBN7.2 Ensembl8106,922,987 - 106,991,068 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096090   ⟹   ENSRNOP00000080624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8115,801,652 - 115,870,392 (+)Ensembl
mRatBN7.2 Ensembl8106,923,023 - 106,991,083 (+)Ensembl
RefSeq Acc Id: NM_001109296   ⟹   NP_001102766
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88115,801,396 - 115,869,812 (+)NCBI
mRatBN7.28106,922,672 - 106,991,090 (+)NCBI
Rnor_6.08114,984,145 - 115,050,844 (+)NCBI
Rnor_5.08114,351,523 - 114,399,621 (+)NCBI
RGSC_v3.48111,413,724 - 111,472,484 (+)RGD
Celera8106,238,776 - 106,303,604 (+)RGD
Sequence:
RefSeq Acc Id: XM_039081982   ⟹   XP_038937910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88115,801,335 - 115,850,221 (+)NCBI
mRatBN7.28106,922,426 - 106,991,678 (+)NCBI
RefSeq Acc Id: XM_039081983   ⟹   XP_038937911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88115,801,335 - 115,869,812 (+)NCBI
mRatBN7.28106,922,194 - 106,991,678 (+)NCBI
RefSeq Acc Id: XM_039081984   ⟹   XP_038937912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88115,805,316 - 115,869,812 (+)NCBI
mRatBN7.28106,926,586 - 106,991,678 (+)NCBI
RefSeq Acc Id: XM_039081985   ⟹   XP_038937913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88115,801,890 - 115,869,812 (+)NCBI
mRatBN7.28106,923,276 - 106,991,678 (+)NCBI
RefSeq Acc Id: XM_039081987   ⟹   XP_038937915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88115,801,971 - 115,869,812 (+)NCBI
mRatBN7.28106,923,286 - 106,991,678 (+)NCBI
RefSeq Acc Id: XR_010054017
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88115,801,335 - 115,826,032 (+)NCBI
RefSeq Acc Id: NP_001102766   ⟸   NM_001109296
- UniProtKB: D4ABU4 (UniProtKB/TrEMBL),   A0A8I5ZQ11 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038175   ⟸   ENSRNOT00000038166
RefSeq Acc Id: XP_038937911   ⟸   XM_039081983
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZQ11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937910   ⟸   XM_039081982
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038937913   ⟸   XM_039081985
- Peptide Label: isoform X2
- UniProtKB: A6I2Q6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937915   ⟸   XM_039081987
- Peptide Label: isoform X2
- UniProtKB: A6I2Q6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937912   ⟸   XM_039081984
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000080624   ⟸   ENSRNOT00000096090
Ensembl Acc Id: ENSRNOP00000079424   ⟸   ENSRNOT00000095943

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABU4-F1-model_v2 AlphaFold D4ABU4 1-368 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565004 AgrOrtholog
BioCyc Gene G2FUF-29244 BioCyc
Ensembl Genes ENSRNOG00000037295 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038166 ENTREZGENE
  ENSRNOT00000038166.8 UniProtKB/TrEMBL
  ENSRNOT00000095943 ENTREZGENE
  ENSRNOT00000095943.2 UniProtKB/TrEMBL
  ENSRNOT00000096090 ENTREZGENE
  ENSRNOT00000096090.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR55_POC1 UniProtKB/TrEMBL
KEGG Report rno:501048 UniProtKB/TrEMBL
NCBI Gene 501048 ENTREZGENE
PANTHER POC1 CENTRIOLAR PROTEIN HOMOLOG A UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 55 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Poc1a PhenoGen
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000037295 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A8I5ZQ11 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZQW2_RAT UniProtKB/TrEMBL
  A6I2Q6 ENTREZGENE, UniProtKB/TrEMBL
  D4ABU4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-22 Poc1a  POC1 centriolar protein A  Poc1a  POC1 centriolar protein homolog A (Chlamydomonas)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-01 Poc1a  POC1 centriolar protein homolog A (Chlamydomonas)  Wdr51a  WD repeat domain 51A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Wdr51a  WD repeat domain 51A  RGD1565004_predicted  similar to RIKEN cDNA 2510040D07 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565004_predicted  similar to RIKEN cDNA 2510040D07 (predicted)  LOC501048  similar to RIKEN cDNA 2510040D07  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501048  similar to RIKEN cDNA 2510040D07      Symbol and Name status set to provisional 70820 PROVISIONAL