Vwa5b2 (von Willebrand factor A domain containing 5B2) - Rat Genome Database

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Gene: Vwa5b2 (von Willebrand factor A domain containing 5B2) Rattus norvegicus
Analyze
Symbol: Vwa5b2
Name: von Willebrand factor A domain containing 5B2
RGD ID: 1564491
Description: Orthologous to human VWA5B2 (von Willebrand factor A domain containing 5B2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical LOC303812; LOC303812; RGD1564491; von Willebrand factor A domain-containing protein 5B2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,810,456 - 93,827,609 (-)NCBIGRCr8
mRatBN7.21180,306,067 - 80,323,220 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,306,350 - 80,323,220 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,028,997 - 89,045,850 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,682,416 - 81,699,269 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,743,482 - 80,760,336 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,991,793 - 84,008,946 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,992,076 - 84,008,946 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01187,064,115 - 87,081,268 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,535,711 - 82,552,800 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1179,146,019 - 79,162,890 (-)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25002582  


Genomics

Comparative Map Data
Vwa5b2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,810,456 - 93,827,609 (-)NCBIGRCr8
mRatBN7.21180,306,067 - 80,323,220 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,306,350 - 80,323,220 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,028,997 - 89,045,850 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,682,416 - 81,699,269 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,743,482 - 80,760,336 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,991,793 - 84,008,946 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,992,076 - 84,008,946 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01187,064,115 - 87,081,268 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,535,711 - 82,552,800 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1179,146,019 - 79,162,890 (-)NCBICelera
Cytogenetic Map11q23NCBI
VWA5B2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,229,585 - 184,242,329 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3184,229,585 - 184,242,329 (+)EnsemblGRCh38hg38GRCh38
GRCh373183,947,373 - 183,960,117 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363185,431,011 - 185,442,814 (+)NCBINCBI36Build 36hg18NCBI36
Celera3182,389,082 - 182,400,881 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3181,354,091 - 181,367,086 (+)NCBIHuRef
CHM1_13183,912,739 - 183,924,539 (+)NCBICHM1_1
T2T-CHM13v2.03187,038,539 - 187,051,613 (+)NCBIT2T-CHM13v2.0
Vwa5b2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,408,174 - 20,424,128 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1620,408,221 - 20,424,127 (+)EnsemblGRCm39 Ensembl
GRCm381620,589,428 - 20,605,378 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,589,471 - 20,605,377 (+)EnsemblGRCm38mm10GRCm38
MGSCv371620,589,655 - 20,605,450 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361620,503,689 - 20,511,991 (+)NCBIMGSCv36mm8
Celera1621,153,658 - 21,169,453 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.47NCBI
Vwa5b2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542023,242,396 - 23,251,352 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542023,243,197 - 23,253,202 (-)NCBIChiLan1.0ChiLan1.0
VWA5B2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22182,099,925 - 182,112,763 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13182,104,590 - 182,117,480 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03181,263,976 - 181,276,843 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13189,747,074 - 189,759,699 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3189,747,903 - 189,764,378 (+)Ensemblpanpan1.1panPan2
VWA5B2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13417,125,012 - 17,135,285 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3417,123,642 - 17,135,287 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3421,210,104 - 21,221,672 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03417,031,429 - 17,042,994 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3417,030,996 - 17,043,950 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13417,068,759 - 17,080,330 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03417,064,626 - 17,076,186 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03417,294,854 - 17,306,415 (+)NCBIUU_Cfam_GSD_1.0
Vwa5b2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,530,349 - 119,543,840 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365785,622,475 - 5,634,760 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365785,622,201 - 5,634,807 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VWA5B2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,182,536 - 5,194,820 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl155,182,830 - 5,193,998 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606313,959,768 - 13,974,068 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vwa5b2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473072,343,660 - 72,354,098 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473072,343,400 - 72,354,625 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Vwa5b2
26 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:48
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000037612
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat

Markers in Region
RH118405  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,305,753 - 80,305,906 (+)MAPPERmRatBN7.2
Rnor_6.01183,991,480 - 83,991,632NCBIRnor6.0
Rnor_5.01187,063,802 - 87,063,954UniSTSRnor5.0
RGSC_v3.41182,535,115 - 82,535,267UniSTSRGSC3.4
Celera1179,145,423 - 79,145,575UniSTS
Cytogenetic Map11q23UniSTS
RH130739  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,306,086 - 80,306,274 (+)MAPPERmRatBN7.2
Rnor_6.01183,991,813 - 83,992,000NCBIRnor6.0
Rnor_5.01187,064,135 - 87,064,322UniSTSRnor5.0
RGSC_v3.41182,535,448 - 82,535,635UniSTSRGSC3.4
Celera1179,145,756 - 79,145,943UniSTS
RH 3.4 Map11658.0UniSTS
Cytogenetic Map11q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 50
Low 3 15 36 20 19 20 8 11 24 31 38 11 8
Below cutoff 28 13 13 13 4 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001840417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005491021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000037612   ⟹   ENSRNOP00000035500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1180,306,350 - 80,323,220 (-)Ensembl
Rnor_6.0 Ensembl1183,992,076 - 84,008,946 (-)Ensembl
RefSeq Acc Id: NM_001134535   ⟹   NP_001128007
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,810,739 - 93,827,609 (-)NCBI
mRatBN7.21180,306,350 - 80,323,220 (-)NCBI
Rnor_6.01183,992,076 - 84,008,946 (-)NCBI
Rnor_5.01187,064,115 - 87,081,268 (-)NCBI
RGSC_v3.41182,535,711 - 82,552,800 (-)RGD
Celera1179,146,019 - 79,162,890 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248571   ⟹   XP_006248633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,810,456 - 93,822,427 (-)NCBI
mRatBN7.21180,306,067 - 80,318,038 (-)NCBI
Rnor_6.01183,991,793 - 84,003,637 (-)NCBI
Rnor_5.01187,064,115 - 87,081,268 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597969   ⟹   XP_017453458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,810,456 - 93,827,437 (-)NCBI
mRatBN7.21180,306,067 - 80,322,551 (-)NCBI
Rnor_6.01183,991,793 - 84,008,030 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597972   ⟹   XP_017453461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,810,456 - 93,827,604 (-)NCBI
mRatBN7.21180,306,353 - 80,323,215 (-)NCBI
Rnor_6.01183,991,793 - 84,008,066 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597974   ⟹   XP_017453463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,810,456 - 93,825,446 (-)NCBI
mRatBN7.21180,306,067 - 80,321,059 (-)NCBI
Rnor_6.01183,991,793 - 84,006,730 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088279   ⟹   XP_038944207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,810,456 - 93,826,845 (-)NCBI
mRatBN7.21180,306,067 - 80,322,551 (-)NCBI
RefSeq Acc Id: XM_039088280   ⟹   XP_038944208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,810,456 - 93,826,847 (-)NCBI
mRatBN7.21180,306,353 - 80,322,552 (-)NCBI
RefSeq Acc Id: XM_039088283   ⟹   XP_038944211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,811,297 - 93,826,930 (-)NCBI
mRatBN7.21180,306,908 - 80,322,554 (-)NCBI
RefSeq Acc Id: XM_039088284   ⟹   XP_038944212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,814,952 - 93,826,930 (-)NCBI
mRatBN7.21180,310,572 - 80,322,554 (-)NCBI
RefSeq Acc Id: XM_063270477   ⟹   XP_063126547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,810,456 - 93,826,853 (-)NCBI
RefSeq Acc Id: XM_063270478   ⟹   XP_063126548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,810,456 - 93,826,853 (-)NCBI
RefSeq Acc Id: XM_063270479   ⟹   XP_063126549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,810,456 - 93,826,841 (-)NCBI
RefSeq Acc Id: XM_063270480   ⟹   XP_063126550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,810,456 - 93,826,930 (-)NCBI
RefSeq Acc Id: XM_063270481   ⟹   XP_063126551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,812,770 - 93,826,930 (-)NCBI
RefSeq Acc Id: XR_005491021
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,811,152 - 93,826,930 (-)NCBI
mRatBN7.21180,306,760 - 80,322,554 (-)NCBI
RefSeq Acc Id: XR_010055950
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,814,522 - 93,826,930 (-)NCBI
RefSeq Acc Id: XR_010055951
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,814,522 - 93,826,930 (-)NCBI
RefSeq Acc Id: NP_001128007   ⟸   NM_001134535
- UniProtKB: D4A7U5 (UniProtKB/TrEMBL),   A6JSA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248633   ⟸   XM_006248571
- Peptide Label: isoform X5
- UniProtKB: D4A7U5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453461   ⟸   XM_017597972
- Peptide Label: isoform X3
- UniProtKB: D4A7U5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453458   ⟸   XM_017597969
- Peptide Label: isoform X1
- UniProtKB: D4A7U5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453463   ⟸   XM_017597974
- Peptide Label: isoform X5
- UniProtKB: D4A7U5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000035500   ⟸   ENSRNOT00000037612
RefSeq Acc Id: XP_038944207   ⟸   XM_039088279
- Peptide Label: isoform X2
- UniProtKB: D4A7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944208   ⟸   XM_039088280
- Peptide Label: isoform X3
- UniProtKB: D4A7U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944211   ⟸   XM_039088283
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038944212   ⟸   XM_039088284
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063126550   ⟸   XM_063270480
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063126548   ⟸   XM_063270478
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063126547   ⟸   XM_063270477
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063126549   ⟸   XM_063270479
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126551   ⟸   XM_063270481
- Peptide Label: isoform X8
Protein Domains
VIT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7U5-F1-model_v2 AlphaFold D4A7U5 1-1243 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564491 AgrOrtholog
BioCyc Gene G2FUF-20740 BioCyc
Ensembl Genes ENSRNOG00000001707 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037612 ENTREZGENE
  ENSRNOT00000037612.6 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
InterPro VIT UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
KEGG Report rno:303812 UniProtKB/TrEMBL
NCBI Gene 303812 ENTREZGENE
PANTHER VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5B2 UniProtKB/TrEMBL
  VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5B2-RELATED UniProtKB/TrEMBL
Pfam VIT_2 UniProtKB/TrEMBL
  VWA_3 UniProtKB/TrEMBL
PhenoGen Vwa5b2 PhenoGen
PROSITE VIT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001707 RatGTEx
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt A6JSA6 ENTREZGENE, UniProtKB/TrEMBL
  D4A7U5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-09 Vwa5b2  von Willebrand factor A domain containing 5B2  RGD1564491  RGD1564491   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564491  RGD1564491   RGD1564491_predicted  RGD1564491 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564491_predicted  RGD1564491 (predicted)  LOC303812  hypothetical LOC303812  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC303812  hypothetical LOC303812      Symbol and Name status set to provisional 70820 PROVISIONAL