Hs6st2 (heparan sulfate 6-O-sulfotransferase 2)

Advanced Search (OLGA)

Gene: Hs6st2 (heparan sulfate 6-O-sulfotransferase 2) Rattus norvegicus

Analyze

Symbol:

Hs6st2

Name:

heparan sulfate 6-O-sulfotransferase 2

RGD ID:

1564397

Description:

Predicted to enable heparan sulfate 6-O-sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, enzymatic modification. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in Paganini-Miozzo syndrome. Orthologous to human HS6ST2 (heparan sulfate 6-O-sulfotransferase 2); PARTICIPATES IN heparan sulfate biosynthetic pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

heparan-sulfate 6-O-sulfotransferase 2; LOC302489; RGD1563872; RGD1564397; similar to heparan sulfate 6-O-sulfotransferase 2 isoform S

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HS6ST2 (heparan sulfate 6-O-sulfotransferase 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Hs6st2 (heparan sulfate 6-O-sulfotransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hs6st2 (heparan sulfate 6-O-sulfotransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HS6ST2 (heparan sulfate 6-O-sulfotransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HS6ST2 (heparan sulfate 6-O-sulfotransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hs6st2 (heparan sulfate 6-O-sulfotransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HS6ST2 (heparan sulfate 6-O-sulfotransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HS6ST2 (heparan sulfate 6-O-sulfotransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hs6st2 (heparan sulfate 6-O-sulfotransferase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TAF11 (TATA-box binding protein associated factor 11)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Hs6st2 (heparan sulfate 6-O-sulfotransferase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	HS6ST2 (heparan sulfate 6-O-sulfotransferase 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hs6st2 (heparan sulfate 6-O-sulfotransferase 2)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hst-6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Hs6st	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	hs6st3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	hs6st2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	135,887,224 - 136,182,388 (-)	NCBI		GRCr8
mRatBN7.2	X	130,966,547 - 131,261,629 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	130,968,385 - 131,261,492 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	133,124,918 - 133,418,748 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	136,706,854 - 137,000,684 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	134,281,915 - 134,575,023 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	138,675,326 - 138,972,774 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	138,677,580 - 138,972,684 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	138,733,912 - 139,028,075 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	138,268,438 - 138,566,049 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	129,889,782 - 130,179,847 (-)	NCBI		Celera
Cytogenetic Map	X	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

autosomal hemophilia A (ISO)

factor VIII deficiency (ISO)

Paganini-Miozzo syndrome (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-methylcholine (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

coumestrol (ISO)

D-glucose (ISO)

DDE (ISO)

diclofenac (ISO)

diquat (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

Enterolactone (ISO)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

fructose (ISO)

glucose (ISO)

glycidol (EXP)

L-methionine (ISO)

lead(0) (ISO)

leflunomide (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

morphine (ISO)

perfluorohexanesulfonic acid (ISO)

phorbol 13-acetate 12-myristate (ISO)

progesterone (ISO)

propanal (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

heparan sulfate proteoglycan biosynthetic process (ISO)

heparan sulfate proteoglycan biosynthetic process, enzymatic modification (IBA)

Cellular Component

Golgi apparatus (ISO)

membrane (IEA)

Molecular Function

heparan sulfate 6-O-sulfotransferase activity (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

heparan sulfate biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10644753	PMID:23376485

Genomics

Comparative Map Data

Hs6st2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	135,887,224 - 136,182,388 (-)	NCBI		GRCr8
mRatBN7.2	X	130,966,547 - 131,261,629 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	130,968,385 - 131,261,492 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	133,124,918 - 133,418,748 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	136,706,854 - 137,000,684 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	134,281,915 - 134,575,023 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	138,675,326 - 138,972,774 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	138,677,580 - 138,972,684 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	138,733,912 - 139,028,075 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	138,268,438 - 138,566,049 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	129,889,782 - 130,179,847 (-)	NCBI		Celera
Cytogenetic Map	X	q36	NCBI

HS6ST2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	132,626,015 - 132,961,370 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	132,626,015 - 132,961,395 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	131,760,043 - 132,095,398 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	131,587,719 - 131,923,093 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	132,146,408 - 132,481,789 (-)	NCBI		Celera
Cytogenetic Map	X	q26.2	NCBI
HuRef	X	121,164,083 - 121,496,636 (-)	NCBI		HuRef
CHM1_1	X	131,671,551 - 132,006,998 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	130,950,680 - 131,286,084 (-)	NCBI		T2T-CHM13v2.0

Hs6st2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	50,476,084 - 50,770,643 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	50,476,089 - 50,770,733 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	51,386,637 - 51,681,705 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	51,387,212 - 51,681,856 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	48,740,389 - 49,034,779 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	47,631,840 - 47,925,107 (-)	NCBI		MGSCv36	mm8
Celera	X	38,808,280 - 39,103,506 (-)	NCBI		Celera
Cytogenetic Map	X	A5	NCBI
cM Map	X	28.04	NCBI

Hs6st2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955473	2,002,725 - 2,289,662 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955473	2,002,475 - 2,291,868 (+)	NCBI	ChiLan1.0	ChiLan1.0

HS6ST2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	132,050,917 - 132,368,649 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	132,054,511 - 132,372,243 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	121,757,028 - 122,090,371 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	132,063,409 - 132,396,038 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	132,065,614 - 132,395,772 (-)	Ensembl	panpan1.1		panPan2

HS6ST2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	103,529,705 - 103,816,049 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	103,531,378 - 103,815,538 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	89,701,832 - 89,987,973 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	105,389,057 - 105,672,488 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	105,389,174 - 105,672,467 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	102,799,821 - 103,086,005 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	104,675,560 - 104,961,216 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	104,447,839 - 104,734,667 (-)	NCBI		UU_Cfam_GSD_1.0

Hs6st2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	101,700,046 - 101,981,296 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936691	1,976,449 - 2,255,144 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936691	1,976,449 - 2,257,303 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HS6ST2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	108,757,821 - 109,044,056 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	108,755,577 - 109,043,976 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	124,748,947 - 124,840,520 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HS6ST2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	107,779,998 - 108,122,567 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666065	45,266,575 - 45,613,462 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hs6st2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624797	12,358,725 - 12,665,049 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624797	12,356,538 - 12,665,283 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Hs6st2
888 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	98
Count of miRNA genes:	79
Interacting mature miRNAs:	88
Transcripts:	ENSRNOT00000040165
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598856	Memor1	Memory QTL 1	1.9		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	X	103312877	148312877	Rat
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	93956491	138956491	Rat
1598809	Memor15	Memory QTL 15	4.4		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	103312877	148312877	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	100567703	150256146	Rat
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	112934952	138400867	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat

Markers in Region

DXGot103

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	131,228,069 - 131,228,281 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	138,939,137 - 138,939,348	NCBI	Rnor6.0
Rnor_5.0	X	138,994,443 - 138,994,654	UniSTS	Rnor5.0
RGSC_v3.4	X	138,532,734 - 138,532,945	UniSTS	RGSC3.4
Celera	X	130,146,279 - 130,146,490	UniSTS
Cytogenetic Map	X	q36	UniSTS

RH139153

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	131,018,631 - 131,018,817 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	138,727,600 - 138,727,785	NCBI	Rnor6.0
Rnor_5.0	X	138,786,186 - 138,786,371	UniSTS	Rnor5.0
RGSC_v3.4	X	138,318,682 - 138,318,867	UniSTS	RGSC3.4
Celera	X	129,940,020 - 129,940,205	UniSTS
Cytogenetic Map	X	q36	UniSTS

Hs6st2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	130,968,960 - 130,969,181 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	138,677,745 - 138,677,965	NCBI	Rnor6.0
Rnor_5.0	X	138,736,331 - 138,736,551	UniSTS	Rnor5.0
Celera	X	129,890,358 - 129,890,578	UniSTS
Cytogenetic Map	X	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
8	11	48	112	90	90	59	25	59	6	215	95	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000040165 ⟹ ENSRNOP00000043184

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	130,968,385 - 131,261,492 (-)	Ensembl
Rnor_6.0 Ensembl	X	138,677,580 - 138,972,684 (-)	Ensembl

RefSeq Acc Id:

NM_001191726 ⟹ NP_001178655

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	135,889,062 - 136,182,154 (-)	NCBI
mRatBN7.2	X	130,968,385 - 131,261,492 (-)	NCBI
Rnor_6.0	X	138,677,169 - 138,972,684 (-)	NCBI
Rnor_5.0	X	138,733,912 - 139,028,075 (-)	NCBI
Celera	X	129,889,782 - 130,179,847 (-)	NCBI

Sequence:

show sequence

ATGGCACTGCCTGCATTTGCAGCCCGGGCGCTTGGGCCGCCACTGCAACCGGAGCAAGGAGCGC
CCGCCCGCACCACCTGTCCCCGCCGGCATTCCAGAGTAGAGGCCGAATTGGCAGCAAGCCGGCC
CGGGTCTGTCGCCGCCTCAGTCCGTGCCGGCCCTCCTAGGGGTGTGTCTCTCGGATTCAACTCC
CCGCCGCTCCAGGACAAGCCCCCAAAGACATTTTCTTCCTTGGCGGGAGCCTTGCGCGCCCCGC
TCTTCGCGCTGCTGCCTCGAGGCCGCCGCAGGCGGATGCACGACCTCAGGCGACGCTGGGACCT
GGGCTCCCTCTGCCGGGCCCTGCTCACTCGGGGCCTGGCAGCTGTGGGCCACTCGCTCAAGCAC
GTGCTCAGTGCGATCTTCTCCAAGATTTTCGGTCCCTTGGCCAGCGTCGGGAACATGGATGAGA
AATCTAACAAGCTGCTGCTGGCTTTGGTGATGCTCTTCCTATTTGCCGTGATCGTCCTCCAATA
CGTGTGCCCCGGCACAGAATGCCAGCTCCTCCGCCTGCAGGCGTTCAGCTCCCCGGTGCCGGAT
CCGTACCGCTCGGAGGATGAGAGTTCCGCCAGGTTTGTACCCCGCTACAATTTCAGCCGTGGCG
ATCTCCTGCGCAAGGTAGACTTCGACATCAAGGGCGATGACCTGATCGTGTTCCTGCACATCCA
GAAGACTGGGGGCACCACTTTCGGCCGTCACCTGGTGCGCAACATCCAGCTGGAGCAGCCATGT
GAGTGCCGCGTGGGGCAGAAGAAATGCACTTGCCACCGGCCGGGTAAGAGGGAGACCTGGCTCT
TCTCCAGGTTCTCCACCGGCTGGAGCTGCGGGCTGCATGCCGACTGGACGGAGCTCACCAGCTG
CGTGCCCGCAGTGGTGGATGGCAAGCGCGACGCCAGGCTGAGACCTTCCAGGTGGAGGATTTTT
CAGATTCTAGATGCAGCAAGTAAAGATAGATGGGGTTCTTCAAACTTCAACTCAGGTGCCAACT
CTCCATCCTCCACAAAGCCCCGGAGCACAACGAAGAGTGGGAAGAACTTCCATTATATCACCAT
CCTCAGAGACCCAGTGTCTCGGTACCTGAGCGAATGGAGACATGTCCAGAGGGGAGCAACATGG
AAAGCATCCCTGCACGTCTGTGATGGAAGGCCCCCGACCTCTGAGGAACTGCCCAGCTGCTACA
CCGGTGATGACTGGTCTGGATGCCCTCTCAAAGAGTTCATGGACTGCCCCTATAATCTGGCCAA
CAACCGCCAAGTCCGCATGCTGTCTGACCTGACTCTAGTGGGCTGCTACAACCTCTCTGTCATG
CCTGAAAAGCAAAGAAACAAAGTCCTTTTGGAAAGTGCCAAATCCAATCTGAAGCACATGGCAT
TCTTTGGCCTCACTGAGTTTCAGCGCAAGACCCAGTACCTGTTTGAGAAGACCTTCAACATGAA
CTTTATTTCGCCGTTTACCCAGTATAATACCACTAGGGCCTCTAGTGTTGAGATCAATGAGGAA
ATCCAAAAGCGTATTGAGGGACTGAATTTTCTGGATATGGAGCTGTACAGCTATGCTAAAGACC
TCTTTCTGCAAAGGTATCAGTTCATGAGGCAGAAAGAGCATCAGGATGCCAGGCGGAAGCGTCA
GGAGCAACGGAAATTTCTGAAGGGAAGGTTCCTTCAGACCCATTTCCAGAGTCAGAGTCAGAGT
CAGGGTCAGAGCCAGGGTCAGAGCCAGGGTCAGAGCCAGGGTCCAGGTCAGAATCTGAGTCAGA
ATCCAAATCCCAACCCAAATCAGAACCTGACTCAGAATCTGAGTCAGAATCTGACTCAGAGTTC
AAATCCCAATTTGACCCAAAGGGAGAACCACGGAAGTCAGAAGCAGGGCTCAGGCCAGGAGCAG
AGTGATAGCAGCACCAGCAATGGCACCAATGACTACATAGGGAGCGTAGAGACATGGCGCTAAC
TGGCTCTCAATGGCTTGTGCACACTGCTTCTCAAAGCATCACCAAAAAGATGGCGTGTATCTTA
CAAGATGAAAATGTCCAAACACATCCTGCTTCCTTCATTTTGGAAGTTCAAAAGAAAAGTGTAG
ACGTTGCCTTTACAGTTGCCTTTTGATTCAGTGTTCTACTGTGTGTGGGTAAAACAAATCTCAG
TGTGTAATTAAATTGTCTGCTTTGGGATGAACTACTTCTGAAATCCAAGAGCCAAACCAGACTC
ACCAGAAATTGCAGTTTAGATATTTTAAGAAGTTCTTAAATTAGGTATGGGAGACACAAAGAAA
ACATGAAATGTGGCCGTTTAAACTTATGGCTAAGAAACAGACTTTAAATGATTCCGGATACTCT
GTTAAAACCCAATCTTGAAAGCACCC

hide sequence

RefSeq Acc Id:

XM_006257578 ⟹ XP_006257640

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	135,887,224 - 136,182,263 (-)	NCBI
mRatBN7.2	X	130,966,547 - 131,261,614 (-)	NCBI
Rnor_6.0	X	138,675,326 - 138,972,774 (-)	NCBI
Rnor_5.0	X	138,733,912 - 139,028,075 (-)	NCBI

Sequence:

show sequence

AAGTGGCTGGGGCTCTTGGGCGCGAGGCATTATTATATAAATTCAAGCTCGCTCCTGATCCTTA
GTACCCTGAGTTGCCTGAAGGGGGGAATGGCACTGCCTGCATTTGCAGCCCGGGCGCTTGGGCC
GCCACTGCAACCGGAGCAAGGAGCGCCCGCCCGCACCACCTGTCCCCGCCGGCATTCCAGAGTA
GAGGCCGAATTGGCAGCAAGCCGGCCCGGGTCTGTCGCCGCCTCAGTCCGTGCCGGCCCTCCTA
GGGGTGTGTCTCTCGGATTCAACTCCCCGCCGCTCCAGGACAAGCCCCCAAAGACATTTTCTTC
CTTGGCGGGAGCCTTGCGCGCCCCGCTCTTCGCGCTGCTGCCTCGAGGCCGCCGCAGGCGGATG
CACGACCTCAGGCGACGCTGGGACCTGGGCTCCCTCTGCCGGGCCCTGCTCACTCGGGGCCTGG
CAGCTGTGGGCCACTCGCTCAAGCACGTGCTCAGTGCGATCTTCTCCAAGATTTTCGGTCCCTT
GGCCAGCGTCGGGAACATGGATGAGAAATCTAACAAGCTGCTGCTGGCTTTGGTGATGCTCTTC
CTATTTGCCGTGATCGTCCTCCAATACGTGTGCCCCGGCACAGAATGCCAGCTCCTCCGCCTGC
AGGCGTTCAGCTCCCCGGTGCCGGATCCGTACCGCTCGGAGGATGAGAGTTCCGCCAGGTTTGT
ACCCCGCTACAATTTCAGCCGTGGCGATCTCCTGCGCAAGGTAGACTTCGACATCAAGGGCGAT
GACCTGATCGTGTTCCTGCACATCCAGAAGACTGGGGGCACCACTTTCGGCCGTCACCTGGTGC
GCAACATCCAGCTGGAGCAGCCATGTGAGTGCCGCGTGGGGCAGAAGAAATGCACTTGCCACCG
GCCGGGTAAGAGGGAGACCTGGCTCTTCTCCAGGTTCTCCACCGGCTGGAGCTGCGGGCTGCAT
GCCGACTGGACGGAGCTCACCAGCTGCGTGCCCGCAGTGGTGGATGGCAAGCGCGACGCCAGGC
TGAGACCTTCCAGGAACTTCCATTATATCACCATCCTCAGAGACCCAGTGTCTCGGTACCTGAG
CGAATGGAGACATGTCCAGAGGGGAGCAACATGGAAAGCATCCCTGCACGTCTGTGATGGAAGG
CCCCCGACCTCTGAGGAACTGCCCAGCTGCTACACCGGTGATGACTGGTCTGGATGCCCTCTCA
AAGAGTTCATGGACTGCCCCTATAATCTGGCCAACAACCGCCAAGTCCGCATGCTGTCTGACCT
GACTCTAGTGGGCTGCTACAACCTCTCTGTCATGCCTGAAAAGCAAAGAAACAAAGTCCTTTTG
GAAAGTGCCAAATCCAATCTGAAGCACATGGCATTCTTTGGCCTCACTGAGTTTCAGCGCAAGA
CCCAGTACCTGTTTGAGAAGACCTTCAACATGAACTTTATTTCGCCGTTTACCCAGTATAATAC
CACTAGGGCCTCTAGTGTTGAGATCAATGAGGAAATCCAAAAGCGTATTGAGGGACTGAATTTT
CTGGATATGGAGCTGTACAGCTATGCTAAAGACCTCTTTCTGCAAAGGTATCAGTTCATGAGGC
AGAAAGAGCATCAGGATGCCAGGCGGAAGCGTCAGGAGCAACGGAAATTTCTGAAGGGAAGGTT
CCTTCAGACCCATTTCCAGAGTCAGAGTCAGAGTCAGGGTCAGAGCCAGGGTCAGAGCCAGGGT
CAGAGCCAGGGTCCAGGTCAGAATCTGAGTCAGAATCCAAATCCCAACCCAAATCAGAACCTGA
CTCAGAATCTGAGTCAGAATCTGACTCAGAGTTCAAATCCCAATTTGACCCAAAGGGAGAACCA
CGGAAGTCAGAAGCAGGGCTCAGGCCAGGAGCAGAGTGATAGCAGCACCAGCAATGGCACCAAT
GACTACATAGGGAGCGTAGAGACATGGCGCTAACTGGCTCTCAATGGCTTGTGCACACTGCTTC
TCAAAGCATCACCAAAAAGATGGCGTGTATCTTACAAGATGAAAATGTCCAAACACATCCTGCT
TCCTTCATTTTGGAAGTTCAAAAGAAAAGTGTAGACGTTGCCTTTACAGTTGCCTTTTGATTCA
GTGTTCTACTGTGTGTGGGTAAAACAAATCTCAGTGTGTAATTAAATTGTCTGCTTTGGGATGA
ACTACTTCTGAAATCCAAGAGCCAAACCAGACTCACCAGAAATTGCAGTTTAGATATTTTAAGA
AGTTCTTAAATTAGGTATGGGAGACACAAAGAAAACATGAAATGTGGCCGTTTAAACTTATGGC
TAAGAAACAGACTTTAAATGATTCCGGATACTCTGTTAAAACCCAATCTTGAAAGCACCCTCCT
CCCCGCAGGGAAGTATAAGTAAAAACATGAACAGACTAAAAGACACTCAAAACCATTCATTTCC
TTGTTTTAACAAGGAGCCTATTTAAACAGAAAAACAACTGATGATAAATTTTGCCAAATTGTAG
AAAGTAAACAATTTCTCACTTAAATGTAGGTGGGTTTATGTAAAAATAATGGCTTTTCAAATAG
ATCGGGATTCGTGTCTTGTAATTTAACAGATGTTTAAAATTTAGAATTTTTCTACCTTCTGCTG
ATTAAAAGGTTTTAAACAGGGTATATCTCATATTAACAAAGCATTTTTTTCCAAATGGAAAGAT
CCAGTTTCCAGATGGTTTCTGGGCACTGTAATTTCAACAATTTCGATCTTTTTGGCGCTGCTTC
TCATTCACTTTAAGGCTTCTCCAAGTTGTGCTCATTCCAAATGAATCCATGTATAGAATTCTTC
TTCATCATCTAAACAGCGTGTTGCTAAATCTCTTGTGGTATTTAATCCTGGACTAAAGTCAGGA
CTTTCTATAGAATTGTGCTATCAATGTCTGTGTAGTAAGGTCCTTAAGAAGAACTCTCAAACAG
GATAATGTGTCTCTTAATATTGCTGAAGTTATTACTCTTCATCAGATTGAACTGAACCTGAATG
TGAACTGTTAATTACTTTGTTTATTGTAATGTTTCCAGTTTGGCTGGCTATTTCTGGCCTATGG
TTCTTTTCTTGTATTGACAGATTTGTACACAATAATAAGAGCAAAAATTTTCTCAAAGACAACG
GTAAACTAATCATTGAGATAGCCAGAGTTACTCAATAACACCAAAAGCTGCCTCTTGATAGTTG
AGCTTGACACTTCTACCAAGTTTTTGTTTATGAACGATCAAAAATGAAGACTGTTCGGCAGCAA
AGCTAGTCAGGGACACACGAGTTGAAGGGAATAGTTTGGTAGTATACATCTGTGAATAGTATTC
TGATGACTTCAATTACAAATTGAACAAAGGAAAAATTATATACACACTGTGTTGTTAAATATCA
TACTGCTTGGCAGTTTACACCTCATGGTTGTTGCTACACTTCTATAAGAACTTACATTAATCCC
TTGACTTTCAGCCAAACAAGGTGACTAGAAGTGATATTCATGTTTTTAAGAAGGACATACTTAG
AAGTATGATCATAAAGTCATACCTATCATAGTCTGTCCAAGTGCATGACCTGGTTTCATCTGTA
ATAATATGGCCACAAGTTGGACACGAAGTTGAGTATCTGGCTCTAAAGGGATTTTCTTGACTCT
GAGCTCTGTGACAATATTTACAGCTTTTTGTGGTGTTGCAGTGTTGAGAATGATGATACCTAAA
AAAACACAAAAAATAAAAAAATTAAAAAAAAAACTAGGAAAAAACAAAAACAAAAAAAACTGGG
AGAAATTTTTAAAAGCACATCTTGAAGTCAAAGTATTTTAGAATGAACTTTTTTGGTGTACATT
GTGTTCTTGAAATATTCTGTAGATCACTATGGTATTTCAGTAATTTTAGTTTTAATTGAAAATA
ATTGCTCTTAAAACTGACAGTGTTGGAAAGCAGGACGAAGTCTGAGCCAGTGGAAAAGCTCATT
ACGGAAAAAAAAAGTGTTATTGCTGTGGTGTGCATGGTTTGCAGAGATTAAGTGCATCTTCTCT
GTCTCTACTGATTACTGTATATAGAGAATGTTATAAATATACATTTTTGTCATCATCATGTAAA
TCCCACGATTTCAAACTGTAAACATCTGTTCAGTGGTGTAGCTTTACGAACCGTTCACTGATTT
TGTGTAATTTAACAATAGATGTGAAATAAAGTTCCAATTGCAGGCTG

hide sequence

RefSeq Acc Id:

XM_017601970 ⟹ XP_017457459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	135,887,224 - 136,182,388 (-)	NCBI
mRatBN7.2	X	130,966,547 - 131,261,629 (-)	NCBI
Rnor_6.0	X	138,675,326 - 138,972,774 (-)	NCBI

Sequence:

show sequence

AAGTGGCTGGGGCTCTTGGGCGCGAGGCATTATTATATAAATTCAAGCTCGCTCCTGATCCTTA
GTACCCTGAGTTGCCTGAAGGGGGGAATGGCACTGCCTGCATTTGCAGCCCGGGCGCTTGGGCC
GCCACTGCAACCGGAGCAAGGAGCGCCCGCCCGCACCACCTGTCCCCGCCGGCATTCCAGAGTA
GAGGCCGAATTGGCAGCAAGCCGGCCCGGGTCTGTCGCCGCCTCAGTCCGTGCCGGCCCTCCTA
GGGGTGTGTCTCTCGGATTCAACTCCCCGCCGCTCCAGGACAAGCCCCCAAAGACATTTTCTTC
CTTGGCGGGAGCCTTGCGCGCCCCGCTCTTCGCGCTGCTGCCTCGAGGCCGCCGCAGGCGGATG
CACGACCTCAGGCGACGCTGGGACCTGGGCTCCCTCTGCCGGGCCCTGCTCACTCGGGGCCTGG
CAGCTGTGGGCCACTCGCTCAAGCACGTGCTCAGTGCGATCTTCTCCAAGATTTTCGGTCCCTT
GGCCAGCGTCGGGAACATGGATGAGAAATCTAACAAGCTGCTGCTGGCTTTGGTGATGCTCTTC
CTATTTGCCGTGATCGTCCTCCAATACGTGTGCCCCGGCACAGAATGCCAGCTCCTCCGCCTGC
AGGCGTTCAGCTCCCCGGTGCCGGATCCGTACCGCTCGGAGGATGAGAGTTCCGCCAGGTTTGT
ACCCCGCTACAATTTCAGCCGTGGCGATCTCCTGCGCAAGGTAGACTTCGACATCAAGGGCGAT
GACCTGATCGTGTTCCTGCACATCCAGAAGACTGGGGGCACCACTTTCGGCCGTCACCTGGTGC
GCAACATCCAGCTGGAGCAGCCATGTGAGTGCCGCGTGGGGCAGAAGAAATGCACTTGCCACCG
GCCGGGTAAGAGGGAGACCTGGCTCTTCTCCAGGTTCTCCACCGGCTGGAGCTGCGGGCTGCAT
GCCGACTGGACGGAGCTCACCAGCTGCGTGCCCGCAGTGGTGGATGGCAAGCGCGACGCCAGGC
TGAGACCTTCCAGTAAAGATAGATGGGGTTCTTCAAACTTCAACTCAGGTGCCAACTCTCCATC
CTCCACAAAGCCCCGGAGCACAACGAAGAGTGGGAAGAACTTCCATTATATCACCATCCTCAGA
GACCCAGTGTCTCGGTACCTGAGCGAATGGAGACATGTCCAGAGGGGAGCAACATGGAAAGCAT
CCCTGCACGTCTGTGATGGAAGGCCCCCGACCTCTGAGGAACTGCCCAGCTGCTACACCGGTGA
TGACTGGTCTGGATGCCCTCTCAAAGAGTTCATGGACTGCCCCTATAATCTGGCCAACAACCGC
CAAGTCCGCATGCTGTCTGACCTGACTCTAGTGGGCTGCTACAACCTCTCTGTCATGCCTGAAA
AGCAAAGAAACAAAGTCCTTTTGGAAAGTGCCAAATCCAATCTGAAGCACATGGCATTCTTTGG
CCTCACTGAGTTTCAGCGCAAGACCCAGTACCTGTTTGAGAAGACCTTCAACATGAACTTTATT
TCGCCGTTTACCCAGTATAATACCACTAGGGCCTCTAGTGTTGAGATCAATGAGGAAATCCAAA
AGCGTATTGAGGGACTGAATTTTCTGGATATGGAGCTGTACAGCTATGCTAAAGACCTCTTTCT
GCAAAGGTATCAGTTCATGAGGCAGAAAGAGCATCAGGATGCCAGGCGGAAGCGTCAGGAGCAA
CGGAAATTTCTGAAGGGAAGGTTCCTTCAGACCCATTTCCAGAGTCAGAGTCAGAGTCAGGGTC
AGAGCCAGGGTCAGAGCCAGGGTCAGAGCCAGGGTCCAGGTCAGAATCTGAGTCAGAATCCAAA
TCCCAACCCAAATCAGAACCTGACTCAGAATCTGAGTCAGAATCTGACTCAGAGTTCAAATCCC
AATTTGACCCAAAGGGAGAACCACGGAAGTCAGAAGCAGGGCTCAGGCCAGGAGCAGAGTGATA
GCAGCACCAGCAATGGCACCAATGACTACATAGGGAGCGTAGAGACATGGCGCTAACTGGCTCT
CAATGGCTTGTGCACACTGCTTCTCAAAGCATCACCAAAAAGATGGCGTGTATCTTACAAGATG
AAAATGTCCAAACACATCCTGCTTCCTTCATTTTGGAAGTTCAAAAGAAAAGTGTAGACGTTGC
CTTTACAGTTGCCTTTTGATTCAGTGTTCTACTGTGTGTGGGTAAAACAAATCTCAGTGTGTAA
TTAAATTGTCTGCTTTGGGATGAACTACTTCTGAAATCCAAGAGCCAAACCAGACTCACCAGAA
ATTGCAGTTTAGATATTTTAAGAAGTTCTTAAATTAGGTATGGGAGACACAAAGAAAACATGAA
ATGTGGCCGTTTAAACTTATGGCTAAGAAACAGACTTTAAATGATTCCGGATACTCTGTTAAAA
CCCAATCTTGAAAGCACCCTCCTCCCCGCAGGGAAGTATAAGTAAAAACATGAACAGACTAAAA
GACACTCAAAACCATTCATTTCCTTGTTTTAACAAGGAGCCTATTTAAACAGAAAAACAACTGA
TGATAAATTTTGCCAAATTGTAGAAAGTAAACAATTTCTCACTTAAATGTAGGTGGGTTTATGT
AAAAATAATGGCTTTTCAAATAGATCGGGATTCGTGTCTTGTAATTTAACAGATGTTTAAAATT
TAGAATTTTTCTACCTTCTGCTGATTAAAAGGTTTTAAACAGGGTATATCTCATATTAACAAAG
CATTTTTTTCCAAATGGAAAGATCCAGTTTCCAGATGGTTTCTGGGCACTGTAATTTCAACAAT
TTCGATCTTTTTGGCGCTGCTTCTCATTCACTTTAAGGCTTCTCCAAGTTGTGCTCATTCCAAA
TGAATCCATGTATAGAATTCTTCTTCATCATCTAAACAGCGTGTTGCTAAATCTCTTGTGGTAT
TTAATCCTGGACTAAAGTCAGGACTTTCTATAGAATTGTGCTATCAATGTCTGTGTAGTAAGGT
CCTTAAGAAGAACTCTCAAACAGGATAATGTGTCTCTTAATATTGCTGAAGTTATTACTCTTCA
TCAGATTGAACTGAACCTGAATGTGAACTGTTAATTACTTTGTTTATTGTAATGTTTCCAGTTT
GGCTGGCTATTTCTGGCCTATGGTTCTTTTCTTGTATTGACAGATTTGTACACAATAATAAGAG
CAAAAATTTTCTCAAAGACAACGGTAAACTAATCATTGAGATAGCCAGAGTTACTCAATAACAC
CAAAAGCTGCCTCTTGATAGTTGAGCTTGACACTTCTACCAAGTTTTTGTTTATGAACGATCAA
AAATGAAGACTGTTCGGCAGCAAAGCTAGTCAGGGACACACGAGTTGAAGGGAATAGTTTGGTA
GTATACATCTGTGAATAGTATTCTGATGACTTCAATTACAAATTGAACAAAGGAAAAATTATAT
ACACACTGTGTTGTTAAATATCATACTGCTTGGCAGTTTACACCTCATGGTTGTTGCTACACTT
CTATAAGAACTTACATTAATCCCTTGACTTTCAGCCAAACAAGGTGACTAGAAGTGATATTCAT
GTTTTTAAGAAGGACATACTTAGAAGTATGATCATAAAGTCATACCTATCATAGTCTGTCCAAG
TGCATGACCTGGTTTCATCTGTAATAATATGGCCACAAGTTGGACACGAAGTTGAGTATCTGGC
TCTAAAGGGATTTTCTTGACTCTGAGCTCTGTGACAATATTTACAGCTTTTTGTGGTGTTGCAG
TGTTGAGAATGATGATACCTAAAAAAACACAAAAAATAAAAAAATTAAAAAAAAAACTAGGAAA
AAACAAAAACAAAAAAAACTGGGAGAAATTTTTAAAAGCACATCTTGAAGTCAAAGTATTTTAG
AATGAACTTTTTTGGTGTACATTGTGTTCTTGAAATATTCTGTAGATCACTATGGTATTTCAGT
AATTTTAGTTTTAATTGAAAATAATTGCTCTTAAAACTGACAGTGTTGGAAAGCAGGACGAAGT
CTGAGCCAGTGGAAAAGCTCATTACGGAAAAAAAAAGTGTTATTGCTGTGGTGTGCATGGTTTG
CAGAGATTAAGTGCATCTTCTCTGTCTCTACTGATTACTGTATATAGAGAATGTTATAAATATA
CATTTTTGTCATCATCATGTAAATCCCACGATTTCAAACTGTAAACATCTGTTCAGTGGTGTAG
CTTTACGAACCGTTCACTGATTTTGTGTAATTTAACAATAGATGTGAAATAAAGTTCCAATTGC
AGGCTG

hide sequence

RefSeq Acc Id:

XM_017601971 ⟹ XP_017457460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	135,887,224 - 136,182,281 (-)	NCBI
mRatBN7.2	X	130,966,547 - 131,261,626 (-)	NCBI
Rnor_6.0	X	138,675,326 - 138,972,774 (-)	NCBI

Sequence:

show sequence

AAGTGGCTGGGGCTCTTGGGCGCGAGGCATTATTATATAAATTCAAGCTCGCTCCTGATCCTTA
GTACCCTGAGTTGCCTGAAGGGGGGAATGGCACTGCCTGCATTTGCAGCCCGGGCGCTTGGGCC
GCCACTGCAACCGGAGCAAGGAGCGCCCGCCCGCACCACCTGTCCCCGCCGGCATTCCAGAGTA
GAGGCCGAATTGGCAGCAAGCCGGCCCGGGTCTGTCGCCGCCTCAGTCCGTGCCGGCCCTCCTA
GGGGTGTGTCTCTCGGATTCAACTCCCCGCCGCTCCAGGACAAGCCCCCAAAGACATTTTCTTC
CTTGGCGGGAGCCTTGCGCGCCCCGCTCTTCGCGCTGCTGCCTCGAGGCCGCCGCAGGCGGATG
CACGACCTCAGGCGACGCTGGGACCTGGGCTCCCTCTGCCGGGCCCTGCTCACTCGGGGCCTGG
CAGCTGTGGGCCACTCGCTCAAGCACGTGCTCAGTGCGATCTTCTCCAAGATTTTCGGTCCCTT
GGCCAGCGTCGGGAACATGGATGAGAAATCTAACAAGCTGCTGCTGGCTTTGGTGATGCTCTTC
CTATTTGCCGTGATCGTCCTCCAATACGTGTGCCCCGGCACAGAATGCCAGCTCCTCCGCCTGC
AGGCGTTCAGCTCCCCGGTGCCGGATCCGTACCGCTCGGAGGATGAGAGTTCCGCCAGGTTTGT
ACCCCGCTACAATTTCAGCCGTGGCGATCTCCTGCGCAAGGTAGACTTCGACATCAAGGGCGAT
GACCTGATCGTGTTCCTGCACATCCAGAAGACTGGGGGCACCACTTTCGGCCGTCACCTGGTGC
GCAACATCCAGCTGGAGCAGCCATGTGAGTGCCGCGTGGGGCAGAAGAAATGCACTTGCCACCG
GCCGGGTAAGAGGGAGACCTGGCTCTTCTCCAGGTTCTCCACCGGCTGGAGCTGCGGGCTGCAT
GCCGACTGGACGGAGCTCACCAGCTGCGTGCCCGCAGTGGTGGATGGCAAGCGCGACGCCAGGC
TGAGACCTTCCAGGTGGAGGATTTTTCAGATTCTAGATGCAGCAAGGAACTTCCATTATATCAC
CATCCTCAGAGACCCAGTGTCTCGGTACCTGAGCGAATGGAGACATGTCCAGAGGGGAGCAACA
TGGAAAGCATCCCTGCACGTCTGTGATGGAAGGCCCCCGACCTCTGAGGAACTGCCCAGCTGCT
ACACCGGTGATGACTGGTCTGGATGCCCTCTCAAAGAGTTCATGGACTGCCCCTATAATCTGGC
CAACAACCGCCAAGTCCGCATGCTGTCTGACCTGACTCTAGTGGGCTGCTACAACCTCTCTGTC
ATGCCTGAAAAGCAAAGAAACAAAGTCCTTTTGGAAAGTGCCAAATCCAATCTGAAGCACATGG
CATTCTTTGGCCTCACTGAGTTTCAGCGCAAGACCCAGTACCTGTTTGAGAAGACCTTCAACAT
GAACTTTATTTCGCCGTTTACCCAGTATAATACCACTAGGGCCTCTAGTGTTGAGATCAATGAG
GAAATCCAAAAGCGTATTGAGGGACTGAATTTTCTGGATATGGAGCTGTACAGCTATGCTAAAG
ACCTCTTTCTGCAAAGGTATCAGTTCATGAGGCAGAAAGAGCATCAGGATGCCAGGCGGAAGCG
TCAGGAGCAACGGAAATTTCTGAAGGGAAGGTTCCTTCAGACCCATTTCCAGAGTCAGAGTCAG
AGTCAGGGTCAGAGCCAGGGTCAGAGCCAGGGTCAGAGCCAGGGTCCAGGTCAGAATCTGAGTC
AGAATCCAAATCCCAACCCAAATCAGAACCTGACTCAGAATCTGAGTCAGAATCTGACTCAGAG
TTCAAATCCCAATTTGACCCAAAGGGAGAACCACGGAAGTCAGAAGCAGGGCTCAGGCCAGGAG
CAGAGTGATAGCAGCACCAGCAATGGCACCAATGACTACATAGGGAGCGTAGAGACATGGCGCT
AACTGGCTCTCAATGGCTTGTGCACACTGCTTCTCAAAGCATCACCAAAAAGATGGCGTGTATC
TTACAAGATGAAAATGTCCAAACACATCCTGCTTCCTTCATTTTGGAAGTTCAAAAGAAAAGTG
TAGACGTTGCCTTTACAGTTGCCTTTTGATTCAGTGTTCTACTGTGTGTGGGTAAAACAAATCT
CAGTGTGTAATTAAATTGTCTGCTTTGGGATGAACTACTTCTGAAATCCAAGAGCCAAACCAGA
CTCACCAGAAATTGCAGTTTAGATATTTTAAGAAGTTCTTAAATTAGGTATGGGAGACACAAAG
AAAACATGAAATGTGGCCGTTTAAACTTATGGCTAAGAAACAGACTTTAAATGATTCCGGATAC
TCTGTTAAAACCCAATCTTGAAAGCACCCTCCTCCCCGCAGGGAAGTATAAGTAAAAACATGAA
CAGACTAAAAGACACTCAAAACCATTCATTTCCTTGTTTTAACAAGGAGCCTATTTAAACAGAA
AAACAACTGATGATAAATTTTGCCAAATTGTAGAAAGTAAACAATTTCTCACTTAAATGTAGGT
GGGTTTATGTAAAAATAATGGCTTTTCAAATAGATCGGGATTCGTGTCTTGTAATTTAACAGAT
GTTTAAAATTTAGAATTTTTCTACCTTCTGCTGATTAAAAGGTTTTAAACAGGGTATATCTCAT
ATTAACAAAGCATTTTTTTCCAAATGGAAAGATCCAGTTTCCAGATGGTTTCTGGGCACTGTAA
TTTCAACAATTTCGATCTTTTTGGCGCTGCTTCTCATTCACTTTAAGGCTTCTCCAAGTTGTGC
TCATTCCAAATGAATCCATGTATAGAATTCTTCTTCATCATCTAAACAGCGTGTTGCTAAATCT
CTTGTGGTATTTAATCCTGGACTAAAGTCAGGACTTTCTATAGAATTGTGCTATCAATGTCTGT
GTAGTAAGGTCCTTAAGAAGAACTCTCAAACAGGATAATGTGTCTCTTAATATTGCTGAAGTTA
TTACTCTTCATCAGATTGAACTGAACCTGAATGTGAACTGTTAATTACTTTGTTTATTGTAATG
TTTCCAGTTTGGCTGGCTATTTCTGGCCTATGGTTCTTTTCTTGTATTGACAGATTTGTACACA
ATAATAAGAGCAAAAATTTTCTCAAAGACAACGGTAAACTAATCATTGAGATAGCCAGAGTTAC
TCAATAACACCAAAAGCTGCCTCTTGATAGTTGAGCTTGACACTTCTACCAAGTTTTTGTTTAT
GAACGATCAAAAATGAAGACTGTTCGGCAGCAAAGCTAGTCAGGGACACACGAGTTGAAGGGAA
TAGTTTGGTAGTATACATCTGTGAATAGTATTCTGATGACTTCAATTACAAATTGAACAAAGGA
AAAATTATATACACACTGTGTTGTTAAATATCATACTGCTTGGCAGTTTACACCTCATGGTTGT
TGCTACACTTCTATAAGAACTTACATTAATCCCTTGACTTTCAGCCAAACAAGGTGACTAGAAG
TGATATTCATGTTTTTAAGAAGGACATACTTAGAAGTATGATCATAAAGTCATACCTATCATAG
TCTGTCCAAGTGCATGACCTGGTTTCATCTGTAATAATATGGCCACAAGTTGGACACGAAGTTG
AGTATCTGGCTCTAAAGGGATTTTCTTGACTCTGAGCTCTGTGACAATATTTACAGCTTTTTGT
GGTGTTGCAGTGTTGAGAATGATGATACCTAAAAAAACACAAAAAATAAAAAAATTAAAAAAAA
AACTAGGAAAAAACAAAAACAAAAAAAACTGGGAGAAATTTTTAAAAGCACATCTTGAAGTCAA
AGTATTTTAGAATGAACTTTTTTGGTGTACATTGTGTTCTTGAAATATTCTGTAGATCACTATG
GTATTTCAGTAATTTTAGTTTTAATTGAAAATAATTGCTCTTAAAACTGACAGTGTTGGAAAGC
AGGACGAAGTCTGAGCCAGTGGAAAAGCTCATTACGGAAAAAAAAAGTGTTATTGCTGTGGTGT
GCATGGTTTGCAGAGATTAAGTGCATCTTCTCTGTCTCTACTGATTACTGTATATAGAGAATGT
TATAAATATACATTTTTGTCATCATCATGTAAATCCCACGATTTCAAACTGTAAACATCTGTTC
AGTGGTGTAGCTTTACGAACCGTTCACTGATTTTGTGTAATTTAACAATAGATGTGAAATAAAG
TTCCAATTGCAGGCTG

hide sequence

RefSeq Acc Id:

XM_017601972 ⟹ XP_017457461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	135,887,224 - 136,181,475 (-)	NCBI
mRatBN7.2	X	130,966,547 - 131,260,833 (-)	NCBI
Rnor_6.0	X	138,675,326 - 138,972,068 (-)	NCBI

Sequence:

show sequence

CGCGGGAAAGGGCTGCGCTGCCTCTGCTTGCAAAGTCAGGCAGCCCGCGGGCTCCTTCCTTCTC
TCCCAGGGGAACCCCGAAGCCCCAGCTCACTTCTAGAGGCCACCTGGTGGGCAGCAGGACACGC
GCCAAGGGAGCCCGCGTTTAGGGTCTGCAGCTCGCGCACACTGAGGGAACTGGGGTCCGGGGCC
CCAGAGAGTCCCGCGGGCCAACGGGATGGGGATAGGAGCTGGAGAGAGGAGAGCGGGAAGCACC
CAGAGCCCGAGACGTGTGGCCGTCGGGAACATGGATGAGAAATCTAACAAGCTGCTGCTGGCTT
TGGTGATGCTCTTCCTATTTGCCGTGATCGTCCTCCAATACGTGTGCCCCGGCACAGAATGCCA
GCTCCTCCGCCTGCAGGCGTTCAGCTCCCCGGTGCCGGATCCGTACCGCTCGGAGGATGAGAGT
TCCGCCAGGTTTGTACCCCGCTACAATTTCAGCCGTGGCGATCTCCTGCGCAAGGTAGACTTCG
ACATCAAGGGCGATGACCTGATCGTGTTCCTGCACATCCAGAAGACTGGGGGCACCACTTTCGG
CCGTCACCTGGTGCGCAACATCCAGCTGGAGCAGCCATGTGAGTGCCGCGTGGGGCAGAAGAAA
TGCACTTGCCACCGGCCGGGTAAGAGGGAGACCTGGCTCTTCTCCAGGTTCTCCACCGGCTGGA
GCTGCGGGCTGCATGCCGACTGGACGGAGCTCACCAGCTGCGTGCCCGCAGTGGTGGATGGCAA
GCGCGACGCCAGGCTGAGACCTTCCAGGTGGAGGATTTTTCAGATTCTAGATGCAGCAAGTAAA
GATAGATGGGGTTCTTCAAACTTCAACTCAGGTGCCAACTCTCCATCCTCCACAAAGCCCCGGA
GCACAACGAAGAGTGGGAAGAACTTCCATTATATCACCATCCTCAGAGACCCAGTGTCTCGGTA
CCTGAGCGAATGGAGACATGTCCAGAGGGGAGCAACATGGAAAGCATCCCTGCACGTCTGTGAT
GGAAGGCCCCCGACCTCTGAGGAACTGCCCAGCTGCTACACCGGTGATGACTGGTCTGGATGCC
CTCTCAAAGAGTTCATGGACTGCCCCTATAATCTGGCCAACAACCGCCAAGTCCGCATGCTGTC
TGACCTGACTCTAGTGGGCTGCTACAACCTCTCTGTCATGCCTGAAAAGCAAAGAAACAAAGTC
CTTTTGGAAAGTGCCAAATCCAATCTGAAGCACATGGCATTCTTTGGCCTCACTGAGTTTCAGC
GCAAGACCCAGTACCTGTTTGAGAAGACCTTCAACATGAACTTTATTTCGCCGTTTACCCAGTA
TAATACCACTAGGGCCTCTAGTGTTGAGATCAATGAGGAAATCCAAAAGCGTATTGAGGGACTG
AATTTTCTGGATATGGAGCTGTACAGCTATGCTAAAGACCTCTTTCTGCAAAGGTATCAGTTCA
TGAGGCAGAAAGAGCATCAGGATGCCAGGCGGAAGCGTCAGGAGCAACGGAAATTTCTGAAGGG
AAGGTTCCTTCAGACCCATTTCCAGAGTCAGAGTCAGAGTCAGGGTCAGAGCCAGGGTCAGAGC
CAGGGTCAGAGCCAGGGTCCAGGTCAGAATCTGAGTCAGAATCCAAATCCCAACCCAAATCAGA
ACCTGACTCAGAATCTGAGTCAGAATCTGACTCAGAGTTCAAATCCCAATTTGACCCAAAGGGA
GAACCACGGAAGTCAGAAGCAGGGCTCAGGCCAGGAGCAGAGTGATAGCAGCACCAGCAATGGC
ACCAATGACTACATAGGGAGCGTAGAGACATGGCGCTAACTGGCTCTCAATGGCTTGTGCACAC
TGCTTCTCAAAGCATCACCAAAAAGATGGCGTGTATCTTACAAGATGAAAATGTCCAAACACAT
CCTGCTTCCTTCATTTTGGAAGTTCAAAAGAAAAGTGTAGACGTTGCCTTTACAGTTGCCTTTT
GATTCAGTGTTCTACTGTGTGTGGGTAAAACAAATCTCAGTGTGTAATTAAATTGTCTGCTTTG
GGATGAACTACTTCTGAAATCCAAGAGCCAAACCAGACTCACCAGAAATTGCAGTTTAGATATT
TTAAGAAGTTCTTAAATTAGGTATGGGAGACACAAAGAAAACATGAAATGTGGCCGTTTAAACT
TATGGCTAAGAAACAGACTTTAAATGATTCCGGATACTCTGTTAAAACCCAATCTTGAAAGCAC
CCTCCTCCCCGCAGGGAAGTATAAGTAAAAACATGAACAGACTAAAAGACACTCAAAACCATTC
ATTTCCTTGTTTTAACAAGGAGCCTATTTAAACAGAAAAACAACTGATGATAAATTTTGCCAAA
TTGTAGAAAGTAAACAATTTCTCACTTAAATGTAGGTGGGTTTATGTAAAAATAATGGCTTTTC
AAATAGATCGGGATTCGTGTCTTGTAATTTAACAGATGTTTAAAATTTAGAATTTTTCTACCTT
CTGCTGATTAAAAGGTTTTAAACAGGGTATATCTCATATTAACAAAGCATTTTTTTCCAAATGG
AAAGATCCAGTTTCCAGATGGTTTCTGGGCACTGTAATTTCAACAATTTCGATCTTTTTGGCGC
TGCTTCTCATTCACTTTAAGGCTTCTCCAAGTTGTGCTCATTCCAAATGAATCCATGTATAGAA
TTCTTCTTCATCATCTAAACAGCGTGTTGCTAAATCTCTTGTGGTATTTAATCCTGGACTAAAG
TCAGGACTTTCTATAGAATTGTGCTATCAATGTCTGTGTAGTAAGGTCCTTAAGAAGAACTCTC
AAACAGGATAATGTGTCTCTTAATATTGCTGAAGTTATTACTCTTCATCAGATTGAACTGAACC
TGAATGTGAACTGTTAATTACTTTGTTTATTGTAATGTTTCCAGTTTGGCTGGCTATTTCTGGC
CTATGGTTCTTTTCTTGTATTGACAGATTTGTACACAATAATAAGAGCAAAAATTTTCTCAAAG
ACAACGGTAAACTAATCATTGAGATAGCCAGAGTTACTCAATAACACCAAAAGCTGCCTCTTGA
TAGTTGAGCTTGACACTTCTACCAAGTTTTTGTTTATGAACGATCAAAAATGAAGACTGTTCGG
CAGCAAAGCTAGTCAGGGACACACGAGTTGAAGGGAATAGTTTGGTAGTATACATCTGTGAATA
GTATTCTGATGACTTCAATTACAAATTGAACAAAGGAAAAATTATATACACACTGTGTTGTTAA
ATATCATACTGCTTGGCAGTTTACACCTCATGGTTGTTGCTACACTTCTATAAGAACTTACATT
AATCCCTTGACTTTCAGCCAAACAAGGTGACTAGAAGTGATATTCATGTTTTTAAGAAGGACAT
ACTTAGAAGTATGATCATAAAGTCATACCTATCATAGTCTGTCCAAGTGCATGACCTGGTTTCA
TCTGTAATAATATGGCCACAAGTTGGACACGAAGTTGAGTATCTGGCTCTAAAGGGATTTTCTT
GACTCTGAGCTCTGTGACAATATTTACAGCTTTTTGTGGTGTTGCAGTGTTGAGAATGATGATA
CCTAAAAAAACACAAAAAATAAAAAAATTAAAAAAAAAACTAGGAAAAAACAAAAACAAAAAAA
ACTGGGAGAAATTTTTAAAAGCACATCTTGAAGTCAAAGTATTTTAGAATGAACTTTTTTGGTG
TACATTGTGTTCTTGAAATATTCTGTAGATCACTATGGTATTTCAGTAATTTTAGTTTTAATTG
AAAATAATTGCTCTTAAAACTGACAGTGTTGGAAAGCAGGACGAAGTCTGAGCCAGTGGAAAAG
CTCATTACGGAAAAAAAAAGTGTTATTGCTGTGGTGTGCATGGTTTGCAGAGATTAAGTGCATC
TTCTCTGTCTCTACTGATTACTGTATATAGAGAATGTTATAAATATACATTTTTGTCATCATCA
TGTAAATCCCACGATTTCAAACTGTAAACATCTGTTCAGTGGTGTAGCTTTACGAACCGTTCAC
TGATTTTGTGTAATTTAACAATAGATGTGAAATAAAGTTCCAATTGCAGGCTG

hide sequence

RefSeq Acc Id:

XM_017601973 ⟹ XP_017457462

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	135,887,224 - 136,181,123 (-)	NCBI
mRatBN7.2	X	130,966,547 - 131,260,471 (-)	NCBI
Rnor_6.0	X	138,675,326 - 138,971,657 (-)	NCBI

Sequence:

show sequence

GCAGAAGCCACAGCGCTGAGCCTGCCGGGAAGGAAGGAAGCGGGGAAGGGCGCCGCTGCCGCCG
AGGTGGAGTACTCGCGTCGGGAACATGGATGAGAAATCTAACAAGCTGCTGCTGGCTTTGGTGA
TGCTCTTCCTATTTGCCGTGATCGTCCTCCAATACGTGTGCCCCGGCACAGAATGCCAGCTCCT
CCGCCTGCAGGCGTTCAGCTCCCCGGTGCCGGATCCGTACCGCTCGGAGGATGAGAGTTCCGCC
AGGTTTGTACCCCGCTACAATTTCAGCCGTGGCGATCTCCTGCGCAAGGTAGACTTCGACATCA
AGGGCGATGACCTGATCGTGTTCCTGCACATCCAGAAGACTGGGGGCACCACTTTCGGCCGTCA
CCTGGTGCGCAACATCCAGCTGGAGCAGCCATGTGAGTGCCGCGTGGGGCAGAAGAAATGCACT
TGCCACCGGCCGGGTAAGAGGGAGACCTGGCTCTTCTCCAGGTTCTCCACCGGCTGGAGCTGCG
GGCTGCATGCCGACTGGACGGAGCTCACCAGCTGCGTGCCCGCAGTGGTGGATGGCAAGCGCGA
CGCCAGGCTGAGACCTTCCAGGTGGAGGATTTTTCAGATTCTAGATGCAGCAAGTAAAGATAGA
TGGGGTTCTTCAAACTTCAACTCAGGTGCCAACTCTCCATCCTCCACAAAGCCCCGGAGCACAA
CGAAGAGTGGGAAGAACTTCCATTATATCACCATCCTCAGAGACCCAGTGTCTCGGTACCTGAG
CGAATGGAGACATGTCCAGAGGGGAGCAACATGGAAAGCATCCCTGCACGTCTGTGATGGAAGG
CCCCCGACCTCTGAGGAACTGCCCAGCTGCTACACCGGTGATGACTGGTCTGGATGCCCTCTCA
AAGAGTTCATGGACTGCCCCTATAATCTGGCCAACAACCGCCAAGTCCGCATGCTGTCTGACCT
GACTCTAGTGGGCTGCTACAACCTCTCTGTCATGCCTGAAAAGCAAAGAAACAAAGTCCTTTTG
GAAAGTGCCAAATCCAATCTGAAGCACATGGCATTCTTTGGCCTCACTGAGTTTCAGCGCAAGA
CCCAGTACCTGTTTGAGAAGACCTTCAACATGAACTTTATTTCGCCGTTTACCCAGTATAATAC
CACTAGGGCCTCTAGTGTTGAGATCAATGAGGAAATCCAAAAGCGTATTGAGGGACTGAATTTT
CTGGATATGGAGCTGTACAGCTATGCTAAAGACCTCTTTCTGCAAAGGTATCAGTTCATGAGGC
AGAAAGAGCATCAGGATGCCAGGCGGAAGCGTCAGGAGCAACGGAAATTTCTGAAGGGAAGGTT
CCTTCAGACCCATTTCCAGAGTCAGAGTCAGAGTCAGGGTCAGAGCCAGGGTCAGAGCCAGGGT
CAGAGCCAGGGTCCAGGTCAGAATCTGAGTCAGAATCCAAATCCCAACCCAAATCAGAACCTGA
CTCAGAATCTGAGTCAGAATCTGACTCAGAGTTCAAATCCCAATTTGACCCAAAGGGAGAACCA
CGGAAGTCAGAAGCAGGGCTCAGGCCAGGAGCAGAGTGATAGCAGCACCAGCAATGGCACCAAT
GACTACATAGGGAGCGTAGAGACATGGCGCTAACTGGCTCTCAATGGCTTGTGCACACTGCTTC
TCAAAGCATCACCAAAAAGATGGCGTGTATCTTACAAGATGAAAATGTCCAAACACATCCTGCT
TCCTTCATTTTGGAAGTTCAAAAGAAAAGTGTAGACGTTGCCTTTACAGTTGCCTTTTGATTCA
GTGTTCTACTGTGTGTGGGTAAAACAAATCTCAGTGTGTAATTAAATTGTCTGCTTTGGGATGA
ACTACTTCTGAAATCCAAGAGCCAAACCAGACTCACCAGAAATTGCAGTTTAGATATTTTAAGA
AGTTCTTAAATTAGGTATGGGAGACACAAAGAAAACATGAAATGTGGCCGTTTAAACTTATGGC
TAAGAAACAGACTTTAAATGATTCCGGATACTCTGTTAAAACCCAATCTTGAAAGCACCCTCCT
CCCCGCAGGGAAGTATAAGTAAAAACATGAACAGACTAAAAGACACTCAAAACCATTCATTTCC
TTGTTTTAACAAGGAGCCTATTTAAACAGAAAAACAACTGATGATAAATTTTGCCAAATTGTAG
AAAGTAAACAATTTCTCACTTAAATGTAGGTGGGTTTATGTAAAAATAATGGCTTTTCAAATAG
ATCGGGATTCGTGTCTTGTAATTTAACAGATGTTTAAAATTTAGAATTTTTCTACCTTCTGCTG
ATTAAAAGGTTTTAAACAGGGTATATCTCATATTAACAAAGCATTTTTTTCCAAATGGAAAGAT
CCAGTTTCCAGATGGTTTCTGGGCACTGTAATTTCAACAATTTCGATCTTTTTGGCGCTGCTTC
TCATTCACTTTAAGGCTTCTCCAAGTTGTGCTCATTCCAAATGAATCCATGTATAGAATTCTTC
TTCATCATCTAAACAGCGTGTTGCTAAATCTCTTGTGGTATTTAATCCTGGACTAAAGTCAGGA
CTTTCTATAGAATTGTGCTATCAATGTCTGTGTAGTAAGGTCCTTAAGAAGAACTCTCAAACAG
GATAATGTGTCTCTTAATATTGCTGAAGTTATTACTCTTCATCAGATTGAACTGAACCTGAATG
TGAACTGTTAATTACTTTGTTTATTGTAATGTTTCCAGTTTGGCTGGCTATTTCTGGCCTATGG
TTCTTTTCTTGTATTGACAGATTTGTACACAATAATAAGAGCAAAAATTTTCTCAAAGACAACG
GTAAACTAATCATTGAGATAGCCAGAGTTACTCAATAACACCAAAAGCTGCCTCTTGATAGTTG
AGCTTGACACTTCTACCAAGTTTTTGTTTATGAACGATCAAAAATGAAGACTGTTCGGCAGCAA
AGCTAGTCAGGGACACACGAGTTGAAGGGAATAGTTTGGTAGTATACATCTGTGAATAGTATTC
TGATGACTTCAATTACAAATTGAACAAAGGAAAAATTATATACACACTGTGTTGTTAAATATCA
TACTGCTTGGCAGTTTACACCTCATGGTTGTTGCTACACTTCTATAAGAACTTACATTAATCCC
TTGACTTTCAGCCAAACAAGGTGACTAGAAGTGATATTCATGTTTTTAAGAAGGACATACTTAG
AAGTATGATCATAAAGTCATACCTATCATAGTCTGTCCAAGTGCATGACCTGGTTTCATCTGTA
ATAATATGGCCACAAGTTGGACACGAAGTTGAGTATCTGGCTCTAAAGGGATTTTCTTGACTCT
GAGCTCTGTGACAATATTTACAGCTTTTTGTGGTGTTGCAGTGTTGAGAATGATGATACCTAAA
AAAACACAAAAAATAAAAAAATTAAAAAAAAAACTAGGAAAAAACAAAAACAAAAAAAACTGGG
AGAAATTTTTAAAAGCACATCTTGAAGTCAAAGTATTTTAGAATGAACTTTTTTGGTGTACATT
GTGTTCTTGAAATATTCTGTAGATCACTATGGTATTTCAGTAATTTTAGTTTTAATTGAAAATA
ATTGCTCTTAAAACTGACAGTGTTGGAAAGCAGGACGAAGTCTGAGCCAGTGGAAAAGCTCATT
ACGGAAAAAAAAAGTGTTATTGCTGTGGTGTGCATGGTTTGCAGAGATTAAGTGCATCTTCTCT
GTCTCTACTGATTACTGTATATAGAGAATGTTATAAATATACATTTTTGTCATCATCATGTAAA
TCCCACGATTTCAAACTGTAAACATCTGTTCAGTGGTGTAGCTTTACGAACCGTTCACTGATTT
TGTGTAATTTAACAATAGATGTGAAATAAAGTTCCAATTGCAGGCTG

hide sequence

RefSeq Acc Id:

XM_063279904 ⟹ XP_063135974

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	135,887,224 - 136,181,407 (-)	NCBI

RefSeq Acc Id:

XM_063279905 ⟹ XP_063135975

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	135,887,224 - 136,181,123 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178655	(Get FASTA)	NCBI Sequence Viewer
	XP_006257640	(Get FASTA)	NCBI Sequence Viewer
	XP_017457459	(Get FASTA)	NCBI Sequence Viewer
	XP_017457460	(Get FASTA)	NCBI Sequence Viewer
	XP_017457461	(Get FASTA)	NCBI Sequence Viewer
	XP_017457462	(Get FASTA)	NCBI Sequence Viewer
	XP_063135974	(Get FASTA)	NCBI Sequence Viewer
	XP_063135975	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM10947	(Get FASTA)	NCBI Sequence Viewer
	EDM10948	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000043184.4

RefSeq Acc Id:

NP_001178655 ⟸ NM_001191726

- UniProtKB:

D3ZEK5 (UniProtKB/TrEMBL), A6JMT6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALPAFAARALGPPLQPEQGAPARTTCPRRHSRVEAELAASRPGSVAASVRAGPPRGVSLGFNS
PPLQDKPPKTFSSLAGALRAPLFALLPRGRRRRMHDLRRRWDLGSLCRALLTRGLAAVGHSLKH
VLSAIFSKIFGPLASVGNMDEKSNKLLLALVMLFLFAVIVLQYVCPGTECQLLRLQAFSSPVPD
PYRSEDESSARFVPRYNFSRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPC
ECRVGQKKCTCHRPGKRETWLFSRFSTGWSCGLHADWTELTSCVPAVVDGKRDARLRPSRWRIF
QILDAASKDRWGSSNFNSGANSPSSTKPRSTTKSGKNFHYITILRDPVSRYLSEWRHVQRGATW
KASLHVCDGRPPTSEELPSCYTGDDWSGCPLKEFMDCPYNLANNRQVRMLSDLTLVGCYNLSVM
PEKQRNKVLLESAKSNLKHMAFFGLTEFQRKTQYLFEKTFNMNFISPFTQYNTTRASSVEINEE
IQKRIEGLNFLDMELYSYAKDLFLQRYQFMRQKEHQDARRKRQEQRKFLKGRFLQTHFQSQSQS
QGQSQGQSQGQSQGPGQNLSQNPNPNPNQNLTQNLSQNLTQSSNPNLTQRENHGSQKQGSGQEQ
SDSSTSNGTNDYIGSVETWR

hide sequence

RefSeq Acc Id:	XP_006257640 ⟸ XM_006257578
- Peptide Label:	isoform X3
- UniProtKB:	A6JMT5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALPAFAARALGPPLQPEQGAPARTTCPRRHSRVEAELAASRPGSVAASVRAGPPRGVSLGFNS PPLQDKPPKTFSSLAGALRAPLFALLPRGRRRRMHDLRRRWDLGSLCRALLTRGLAAVGHSLKH VLSAIFSKIFGPLASVGNMDEKSNKLLLALVMLFLFAVIVLQYVCPGTECQLLRLQAFSSPVPD PYRSEDESSARFVPRYNFSRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPC ECRVGQKKCTCHRPGKRETWLFSRFSTGWSCGLHADWTELTSCVPAVVDGKRDARLRPSRNFHY ITILRDPVSRYLSEWRHVQRGATWKASLHVCDGRPPTSEELPSCYTGDDWSGCPLKEFMDCPYN LANNRQVRMLSDLTLVGCYNLSVMPEKQRNKVLLESAKSNLKHMAFFGLTEFQRKTQYLFEKTF NMNFISPFTQYNTTRASSVEINEEIQKRIEGLNFLDMELYSYAKDLFLQRYQFMRQKEHQDARR KRQEQRKFLKGRFLQTHFQSQSQSQGQSQGQSQGQSQGPGQNLSQNPNPNPNQNLTQNLSQNLT QSSNPNLTQRENHGSQKQGSGQEQSDSSTSNGTNDYIGSVETWR hide sequence

RefSeq Acc Id:	XP_017457459 ⟸ XM_017601970
- Peptide Label:	isoform X1
- UniProtKB:	A6JMT6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALPAFAARALGPPLQPEQGAPARTTCPRRHSRVEAELAASRPGSVAASVRAGPPRGVSLGFNS PPLQDKPPKTFSSLAGALRAPLFALLPRGRRRRMHDLRRRWDLGSLCRALLTRGLAAVGHSLKH VLSAIFSKIFGPLASVGNMDEKSNKLLLALVMLFLFAVIVLQYVCPGTECQLLRLQAFSSPVPD PYRSEDESSARFVPRYNFSRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPC ECRVGQKKCTCHRPGKRETWLFSRFSTGWSCGLHADWTELTSCVPAVVDGKRDARLRPSSKDRW GSSNFNSGANSPSSTKPRSTTKSGKNFHYITILRDPVSRYLSEWRHVQRGATWKASLHVCDGRP PTSEELPSCYTGDDWSGCPLKEFMDCPYNLANNRQVRMLSDLTLVGCYNLSVMPEKQRNKVLLE SAKSNLKHMAFFGLTEFQRKTQYLFEKTFNMNFISPFTQYNTTRASSVEINEEIQKRIEGLNFL DMELYSYAKDLFLQRYQFMRQKEHQDARRKRQEQRKFLKGRFLQTHFQSQSQSQGQSQGQSQGQ SQGPGQNLSQNPNPNPNQNLTQNLSQNLTQSSNPNLTQRENHGSQKQGSGQEQSDSSTSNGTND YIGSVETWR hide sequence

RefSeq Acc Id:	XP_017457460 ⟸ XM_017601971
- Peptide Label:	isoform X2
- UniProtKB:	A6JMT5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALPAFAARALGPPLQPEQGAPARTTCPRRHSRVEAELAASRPGSVAASVRAGPPRGVSLGFNS PPLQDKPPKTFSSLAGALRAPLFALLPRGRRRRMHDLRRRWDLGSLCRALLTRGLAAVGHSLKH VLSAIFSKIFGPLASVGNMDEKSNKLLLALVMLFLFAVIVLQYVCPGTECQLLRLQAFSSPVPD PYRSEDESSARFVPRYNFSRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPC ECRVGQKKCTCHRPGKRETWLFSRFSTGWSCGLHADWTELTSCVPAVVDGKRDARLRPSRWRIF QILDAARNFHYITILRDPVSRYLSEWRHVQRGATWKASLHVCDGRPPTSEELPSCYTGDDWSGC PLKEFMDCPYNLANNRQVRMLSDLTLVGCYNLSVMPEKQRNKVLLESAKSNLKHMAFFGLTEFQ RKTQYLFEKTFNMNFISPFTQYNTTRASSVEINEEIQKRIEGLNFLDMELYSYAKDLFLQRYQF MRQKEHQDARRKRQEQRKFLKGRFLQTHFQSQSQSQGQSQGQSQGQSQGPGQNLSQNPNPNPNQ NLTQNLSQNLTQSSNPNLTQRENHGSQKQGSGQEQSDSSTSNGTNDYIGSVETWR hide sequence

RefSeq Acc Id:	XP_017457461 ⟸ XM_017601972
- Peptide Label:	isoform X4
- UniProtKB:	A6JMT6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGIGAGERRAGSTQSPRRVAVGNMDEKSNKLLLALVMLFLFAVIVLQYVCPGTECQLLRLQAFS SPVPDPYRSEDESSARFVPRYNFSRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNIQ LEQPCECRVGQKKCTCHRPGKRETWLFSRFSTGWSCGLHADWTELTSCVPAVVDGKRDARLRPS RWRIFQILDAASKDRWGSSNFNSGANSPSSTKPRSTTKSGKNFHYITILRDPVSRYLSEWRHVQ RGATWKASLHVCDGRPPTSEELPSCYTGDDWSGCPLKEFMDCPYNLANNRQVRMLSDLTLVGCY NLSVMPEKQRNKVLLESAKSNLKHMAFFGLTEFQRKTQYLFEKTFNMNFISPFTQYNTTRASSV EINEEIQKRIEGLNFLDMELYSYAKDLFLQRYQFMRQKEHQDARRKRQEQRKFLKGRFLQTHFQ SQSQSQGQSQGQSQGQSQGPGQNLSQNPNPNPNQNLTQNLSQNLTQSSNPNLTQRENHGSQKQG SGQEQSDSSTSNGTNDYIGSVETWR hide sequence

RefSeq Acc Id:	XP_017457462 ⟸ XM_017601973
- Peptide Label:	isoform X5
- UniProtKB:	A6JMT6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDEKSNKLLLALVMLFLFAVIVLQYVCPGTECQLLRLQAFSSPVPDPYRSEDESSARFVPRYNF SRGDLLRKVDFDIKGDDLIVFLHIQKTGGTTFGRHLVRNIQLEQPCECRVGQKKCTCHRPGKRE TWLFSRFSTGWSCGLHADWTELTSCVPAVVDGKRDARLRPSRWRIFQILDAASKDRWGSSNFNS GANSPSSTKPRSTTKSGKNFHYITILRDPVSRYLSEWRHVQRGATWKASLHVCDGRPPTSEELP SCYTGDDWSGCPLKEFMDCPYNLANNRQVRMLSDLTLVGCYNLSVMPEKQRNKVLLESAKSNLK HMAFFGLTEFQRKTQYLFEKTFNMNFISPFTQYNTTRASSVEINEEIQKRIEGLNFLDMELYSY AKDLFLQRYQFMRQKEHQDARRKRQEQRKFLKGRFLQTHFQSQSQSQGQSQGQSQGQSQGPGQN LSQNPNPNPNQNLTQNLSQNLTQSSNPNLTQRENHGSQKQGSGQEQSDSSTSNGTNDYIGSVET WR hide sequence

Ensembl Acc Id:

ENSRNOP00000043184 ⟸ ENSRNOT00000040165

RefSeq Acc Id:	XP_063135974 ⟸ XM_063279904
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063135975 ⟸ XM_063279905
- Peptide Label:	isoform X7

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZEK5-F1-model_v2	AlphaFold	D3ZEK5	1-660	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564397	AgrOrtholog
BioCyc Gene	G2FUF-1045	BioCyc
BioCyc Pathway	PWY-6558 [heparan sulfate biosynthesis]	BioCyc
BioCyc Pathway Image	PWY-6558	BioCyc
Ensembl Genes	ENSRNOG00000030880	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000040165.5	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	Heparan_SO4-6-sulfoTrfase	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Sulfotransferase	UniProtKB/TrEMBL
KEGG Report	rno:302489	UniProtKB/TrEMBL
NCBI Gene	302489	ENTREZGENE
PANTHER	HEPARAN-SULFATE 6-O-SULFOTRANSFERASE 2	UniProtKB/TrEMBL
	HS6ST	UniProtKB/TrEMBL
Pfam	Sulfotransfer_2	UniProtKB/TrEMBL
PhenoGen	Hs6st2	PhenoGen
RatGTEx	ENSRNOG00000030880	RatGTEx
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A6JMT5	ENTREZGENE, UniProtKB/TrEMBL
	A6JMT6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZEK5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Hs6st2	heparan sulfate 6-O-sulfotransferase 2	RGD1564397_predicted	similar to heparan sulfate 6-O-sulfotransferase 2 isoform S (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	RGD1564397_predicted	similar to heparan sulfate 6-O-sulfotransferase 2 isoform S (predicted)	LOC683774	similar to Heparan-sulfate 6-O-sulfotransferase 2 (HS6ST-2)	Data merged from RGD:1583321	1643240	APPROVED
2006-11-19	LOC683774	similar to Heparan-sulfate 6-O-sulfotransferase 2 (HS6ST-2)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-03-07	RGD1564397_predicted	similar to heparan sulfate 6-O-sulfotransferase 2 isoform S (predicted)	LOC302489	similar to heparan sulfate 6-O-sulfotransferase 2 isoform S	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC302489	similar to heparan sulfate 6-O-sulfotransferase 2 isoform S			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

BioCyc Pathways

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

BioCyc Pathways