Hs6st2 (heparan sulfate 6-O-sulfotransferase 2) - Rat Genome Database

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Gene: Hs6st2 (heparan sulfate 6-O-sulfotransferase 2) Rattus norvegicus
Analyze
Symbol: Hs6st2
Name: heparan sulfate 6-O-sulfotransferase 2
RGD ID: 1564397
Description: Predicted to enable heparan sulfate 6-sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in Paganini-Miozzo syndrome. Orthologous to human HS6ST2 (heparan sulfate 6-O-sulfotransferase 2); PARTICIPATES IN heparan sulfate biosynthetic pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: heparan-sulfate 6-O-sulfotransferase 2; LOC302489; RGD1563872; RGD1564397; similar to heparan sulfate 6-O-sulfotransferase 2 isoform S
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X135,887,224 - 136,182,388 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX135,888,472 - 136,182,353 (-)EnsemblGRCr8
mRatBN7.2X130,966,547 - 131,261,629 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX130,968,385 - 131,261,492 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX133,124,918 - 133,418,748 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X136,706,854 - 137,000,684 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X134,281,915 - 134,575,023 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X138,675,326 - 138,972,774 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX138,677,580 - 138,972,684 (-)Ensemblrn6Rnor6.0
Rnor_5.0X138,733,912 - 139,028,075 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X138,268,438 - 138,566,049 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX129,889,782 - 130,179,847 (-)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IEA,ISO)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10644753   PMID:23376485  


Genomics

Comparative Map Data
Hs6st2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X135,887,224 - 136,182,388 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX135,888,472 - 136,182,353 (-)EnsemblGRCr8
mRatBN7.2X130,966,547 - 131,261,629 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX130,968,385 - 131,261,492 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX133,124,918 - 133,418,748 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X136,706,854 - 137,000,684 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X134,281,915 - 134,575,023 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X138,675,326 - 138,972,774 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX138,677,580 - 138,972,684 (-)Ensemblrn6Rnor6.0
Rnor_5.0X138,733,912 - 139,028,075 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X138,268,438 - 138,566,049 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX129,889,782 - 130,179,847 (-)NCBICelera
Cytogenetic MapXq36NCBI
HS6ST2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X132,626,015 - 132,961,370 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX132,626,015 - 132,961,395 (-)Ensemblhg38GRCh38
GRCh37X131,760,043 - 132,095,398 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X131,587,719 - 131,923,093 (-)NCBIBuild 36Build 36hg18NCBI36
CeleraX132,146,408 - 132,481,789 (-)NCBICelera
Cytogenetic MapXq26.2NCBI
HuRefX121,164,083 - 121,496,636 (-)NCBIHuRef
CHM1_1X131,671,551 - 132,006,998 (-)NCBICHM1_1
T2T-CHM13v2.0X130,950,680 - 131,286,084 (-)NCBIT2T-CHM13v2.0
Hs6st2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X50,476,084 - 50,770,643 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX50,476,089 - 50,770,733 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X51,386,637 - 51,681,705 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX51,387,212 - 51,681,856 (-)Ensemblmm10GRCm38
MGSCv37X48,740,389 - 49,034,779 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X47,631,840 - 47,925,107 (-)NCBIMGSCv36mm8
CeleraX38,808,280 - 39,103,506 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX28.04NCBI
Hs6st2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554732,002,725 - 2,289,662 (+)Ensembl
ChiLan1.0NW_0049554732,002,475 - 2,291,868 (+)NCBIChiLan1.0ChiLan1.0
HS6ST2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X132,050,917 - 132,368,649 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X132,054,511 - 132,372,243 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X121,757,028 - 122,090,371 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X132,063,409 - 132,396,038 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX132,065,614 - 132,395,772 (-)EnsemblpanPan2panpan1.1
HS6ST2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X103,529,705 - 103,816,049 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX103,531,378 - 103,815,538 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX89,701,832 - 89,987,973 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X105,389,057 - 105,672,488 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX105,389,174 - 105,672,467 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X102,799,821 - 103,086,005 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X104,675,560 - 104,961,216 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X104,447,839 - 104,734,667 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hs6st2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X101,700,046 - 101,981,296 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366911,976,449 - 2,255,144 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366911,976,449 - 2,257,303 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HS6ST2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX108,757,821 - 109,044,056 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X108,755,577 - 109,043,976 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X124,748,947 - 124,840,520 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HS6ST2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X107,779,998 - 108,122,567 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606545,266,575 - 45,613,462 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hs6st2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479712,358,725 - 12,665,049 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462479712,356,538 - 12,665,283 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Hs6st2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X115,071,952 - 115,075,185 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Hs6st2
974 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:79
Interacting mature miRNAs:88
Transcripts:ENSRNOT00000040165
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X120028026141353710Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X120028026141353710Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat

Markers in Region
DXGot103  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X131,228,069 - 131,228,281 (+)MAPPERmRatBN7.2
Rnor_6.0X138,939,137 - 138,939,348NCBIRnor6.0
Rnor_5.0X138,994,443 - 138,994,654UniSTSRnor5.0
RGSC_v3.4X138,532,734 - 138,532,945UniSTSRGSC3.4
CeleraX130,146,279 - 130,146,490UniSTS
Cytogenetic MapXq36UniSTS
RH139153  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X131,018,631 - 131,018,817 (+)MAPPERmRatBN7.2
Rnor_6.0X138,727,600 - 138,727,785NCBIRnor6.0
Rnor_5.0X138,786,186 - 138,786,371UniSTSRnor5.0
RGSC_v3.4X138,318,682 - 138,318,867UniSTSRGSC3.4
CeleraX129,940,020 - 129,940,205UniSTS
Cytogenetic MapXq36UniSTS
Hs6st2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X130,968,960 - 130,969,181 (+)MAPPERmRatBN7.2
Rnor_6.0X138,677,745 - 138,677,965NCBIRnor6.0
Rnor_5.0X138,736,331 - 138,736,551UniSTSRnor5.0
CeleraX129,890,358 - 129,890,578UniSTS
Cytogenetic MapXq36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 12 66 148 90 90 59 51 59 6 302 147 9 130 73 92 31 16 16

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006257578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000040165   ⟹   ENSRNOP00000043184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX135,889,062 - 136,182,353 (-)Ensembl
mRatBN7.2 EnsemblX130,968,385 - 131,261,492 (-)Ensembl
Rnor_6.0 EnsemblX138,677,580 - 138,972,684 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157289   ⟹   ENSRNOP00000103693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX135,889,062 - 136,182,353 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000172807   ⟹   ENSRNOP00000109728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX135,888,472 - 136,182,353 (-)Ensembl
RefSeq Acc Id: NM_001191726   ⟹   NP_001178655
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X135,889,062 - 136,182,154 (-)NCBI
mRatBN7.2X130,968,385 - 131,261,492 (-)NCBI
Rnor_6.0X138,677,169 - 138,972,684 (-)NCBI
Rnor_5.0X138,733,912 - 139,028,075 (-)NCBI
CeleraX129,889,782 - 130,179,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006257578   ⟹   XP_006257640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X135,887,224 - 136,182,263 (-)NCBI
mRatBN7.2X130,966,547 - 131,261,614 (-)NCBI
Rnor_6.0X138,675,326 - 138,972,774 (-)NCBI
Rnor_5.0X138,733,912 - 139,028,075 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601970   ⟹   XP_017457459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X135,887,224 - 136,182,388 (-)NCBI
mRatBN7.2X130,966,547 - 131,261,629 (-)NCBI
Rnor_6.0X138,675,326 - 138,972,774 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601971   ⟹   XP_017457460
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X135,887,224 - 136,182,281 (-)NCBI
mRatBN7.2X130,966,547 - 131,261,626 (-)NCBI
Rnor_6.0X138,675,326 - 138,972,774 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601972   ⟹   XP_017457461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X135,887,224 - 136,181,475 (-)NCBI
mRatBN7.2X130,966,547 - 131,260,833 (-)NCBI
Rnor_6.0X138,675,326 - 138,972,068 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601973   ⟹   XP_017457462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X135,887,224 - 136,181,123 (-)NCBI
mRatBN7.2X130,966,547 - 131,260,471 (-)NCBI
Rnor_6.0X138,675,326 - 138,971,657 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063279904   ⟹   XP_063135974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X135,887,224 - 136,181,407 (-)NCBI
RefSeq Acc Id: XM_063279905   ⟹   XP_063135975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X135,887,224 - 136,181,123 (-)NCBI
RefSeq Acc Id: NP_001178655   ⟸   NM_001191726
- UniProtKB: D3ZEK5 (UniProtKB/TrEMBL),   A6JMT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257640   ⟸   XM_006257578
- Peptide Label: isoform X3
- UniProtKB: A6JMT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457459   ⟸   XM_017601970
- Peptide Label: isoform X1
- UniProtKB: A6JMT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457460   ⟸   XM_017601971
- Peptide Label: isoform X2
- UniProtKB: A6JMT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457461   ⟸   XM_017601972
- Peptide Label: isoform X4
- UniProtKB: A6JMT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457462   ⟸   XM_017601973
- Peptide Label: isoform X5
- UniProtKB: A6JMT6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000043184   ⟸   ENSRNOT00000040165
RefSeq Acc Id: XP_063135974   ⟸   XM_063279904
- Peptide Label: isoform X6
- UniProtKB: A6JMT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135975   ⟸   XM_063279905
- Peptide Label: isoform X7
- UniProtKB: A6JMT5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103693   ⟸   ENSRNOT00000157289
Ensembl Acc Id: ENSRNOP00000109728   ⟸   ENSRNOT00000172807

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZEK5-F1-model_v2 AlphaFold D3ZEK5 1-660 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564397 AgrOrtholog
BioCyc Gene G2FUF-1045 BioCyc
BioCyc Pathway PWY-6558 [heparan sulfate biosynthesis] BioCyc
BioCyc Pathway Image PWY-6558 BioCyc
Ensembl Genes ENSRNOG00000030880 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040165 ENTREZGENE
  ENSRNOT00000040165.6 UniProtKB/TrEMBL
  ENSRNOT00000157289 ENTREZGENE
  ENSRNOT00000157289.1 UniProtKB/TrEMBL
  ENSRNOT00000172807 ENTREZGENE
  ENSRNOT00000172807.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Heparan_SO4-6-sulfoTrfase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase UniProtKB/TrEMBL
KEGG Report rno:302489 UniProtKB/TrEMBL
NCBI Gene 302489 ENTREZGENE
PANTHER HEPARAN-SULFATE 6-O-SULFOTRANSFERASE 2 UniProtKB/TrEMBL
  HS6ST UniProtKB/TrEMBL
Pfam Sulfotransfer_2 UniProtKB/TrEMBL
PhenoGen Hs6st2 PhenoGen
RatGTEx ENSRNOG00000030880 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0ABK0LFV3_RAT UniProtKB/TrEMBL
  A0ABK0M3T0_RAT UniProtKB/TrEMBL
  A6JMT5 ENTREZGENE, UniProtKB/TrEMBL
  A6JMT6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZEK5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Hs6st2  heparan sulfate 6-O-sulfotransferase 2  RGD1564397_predicted  similar to heparan sulfate 6-O-sulfotransferase 2 isoform S (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 RGD1564397_predicted  similar to heparan sulfate 6-O-sulfotransferase 2 isoform S (predicted)  LOC683774  similar to Heparan-sulfate 6-O-sulfotransferase 2 (HS6ST-2)  Data merged from RGD:1583321 1643240 APPROVED
2006-11-19 LOC683774  similar to Heparan-sulfate 6-O-sulfotransferase 2 (HS6ST-2)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1564397_predicted  similar to heparan sulfate 6-O-sulfotransferase 2 isoform S (predicted)  LOC302489  similar to heparan sulfate 6-O-sulfotransferase 2 isoform S  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302489  similar to heparan sulfate 6-O-sulfotransferase 2 isoform S      Symbol and Name status set to provisional 70820 PROVISIONAL