Btbd17 (BTB domain containing 17) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Btbd17 (BTB domain containing 17) Rattus norvegicus
Analyze
Symbol: Btbd17
Name: BTB domain containing 17
RGD ID: 1563331
Description: Predicted to be located in extracellular region. Orthologous to human BTBD17 (BTB domain containing 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BTB (POZ) domain containing 17; BTB/POZ domain-containing protein 17; LOC303660; RGD1563331; similar to CG1841-PA, isoform A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,325,177 - 100,331,669 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10100,325,177 - 100,331,771 (-)EnsemblGRCr8
mRatBN7.21099,826,132 - 99,832,624 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1099,826,132 - 99,832,624 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10104,884,580 - 104,891,092 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010104,347,701 - 104,354,213 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01099,747,201 - 99,753,689 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,334,052 - 103,341,820 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,334,052 - 103,340,922 (-)Ensemblrn6Rnor6.0
Rnor_5.010102,991,771 - 102,999,504 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410104,674,002 - 104,680,503 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1098,416,268 - 98,422,760 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Btbd17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,325,177 - 100,331,669 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10100,325,177 - 100,331,771 (-)EnsemblGRCr8
mRatBN7.21099,826,132 - 99,832,624 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1099,826,132 - 99,832,624 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx10104,884,580 - 104,891,092 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010104,347,701 - 104,354,213 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01099,747,201 - 99,753,689 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,334,052 - 103,341,820 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,334,052 - 103,340,922 (-)Ensemblrn6Rnor6.0
Rnor_5.010102,991,771 - 102,999,504 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410104,674,002 - 104,680,503 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1098,416,268 - 98,422,760 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
BTBD17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,356,416 - 74,363,327 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,356,416 - 74,361,868 (-)Ensemblhg38GRCh38
GRCh371772,352,555 - 72,358,007 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361769,864,150 - 69,869,553 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1768,945,277 - 68,950,680 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1767,762,254 - 67,767,273 (-)NCBIHuRef
CHM1_11772,417,197 - 72,422,598 (-)NCBICHM1_1
T2T-CHM13v2.01775,247,050 - 75,253,964 (-)NCBIT2T-CHM13v2.0
Btbd17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,681,495 - 114,692,738 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,682,043 - 114,686,771 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3811114,790,669 - 114,801,916 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,791,217 - 114,795,945 (-)Ensemblmm10GRCm38
MGSCv3711114,651,983 - 114,657,206 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611114,606,759 - 114,611,982 (-)NCBIMGSCv36mm8
Celera11126,551,653 - 126,556,876 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.54NCBI
Btbd17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,247,702 - 1,252,581 (-)Ensembl
ChiLan1.0NW_0049555531,247,702 - 1,271,777 (-)NCBIChiLan1.0ChiLan1.0
BTBD17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,386,874 - 90,402,269 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,209,808 - 95,225,216 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,295,368 - 68,302,595 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11773,853,405 - 73,858,760 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1773,853,645 - 73,858,684 (-)EnsemblpanPan2panpan1.1
BTBD17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,046,811 - 6,052,843 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl96,047,911 - 6,052,088 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha96,668,812 - 6,674,822 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.096,719,394 - 6,725,404 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,720,247 - 6,724,688 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,759,917 - 6,765,926 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,863,516 - 6,869,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,923,390 - 6,929,270 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Btbd17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,628,736 - 6,633,081 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936655126,622 - 130,898 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936655126,645 - 130,898 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTBD17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,770,172 - 6,775,152 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1126,770,105 - 6,775,595 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,735,809 - 6,741,912 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BTBD17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11647,262,362 - 47,277,915 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1647,272,495 - 47,277,672 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607718,075,667 - 18,091,150 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Btbd17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,319,607 - 4,324,214 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248014,319,216 - 4,325,131 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Btbd17
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1974,524,589 - 74,530,206 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Btbd17
102 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:357
Count of miRNA genes:188
Interacting mature miRNAs:232
Transcripts:ENSRNOT00000004191
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093723381107556066Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1058073360103073360Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)1079272424102982300Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1097202388107556066Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1097202388107556066Rat
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
6893357Bw102Body weight QTL 1020.50.36body mass (VT:0001259)body weight (CMO:0000012)1081012077101828297Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091727883107713808Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat

Markers in Region
RH137738  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21099,826,235 - 99,826,381 (+)MAPPERmRatBN7.2
Rnor_6.010103,334,156 - 103,334,301NCBIRnor6.0
Rnor_5.010102,991,875 - 102,992,020UniSTSRnor5.0
RGSC_v3.410104,674,106 - 104,674,251UniSTSRGSC3.4
Celera1098,416,372 - 98,416,517UniSTS
Cytogenetic Map10q32.2UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
5 2 37 121 21 24 12 10 12 2 105 52 126 35 73 12 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000004191   ⟹   ENSRNOP00000004191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10100,325,177 - 100,331,771 (-)Ensembl
mRatBN7.2 Ensembl1099,826,132 - 99,832,624 (-)Ensembl
Rnor_6.0 Ensembl10103,334,052 - 103,340,922 (-)Ensembl
RefSeq Acc Id: NM_001134534   ⟹   NP_001128006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,325,177 - 100,331,669 (-)NCBI
mRatBN7.21099,826,132 - 99,832,624 (-)NCBI
Rnor_6.010103,334,052 - 103,340,552 (-)NCBI
Rnor_5.010102,991,771 - 102,999,504 (-)NCBI
RGSC_v3.410104,674,002 - 104,680,503 (-)RGD
Celera1098,416,268 - 98,422,760 (-)RGD
Sequence:
RefSeq Acc Id: XM_006247692   ⟹   XP_006247754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,326,080 - 100,331,664 (-)NCBI
mRatBN7.21099,827,035 - 99,832,619 (-)NCBI
Rnor_6.010103,334,569 - 103,341,820 (-)NCBI
Rnor_5.010102,991,771 - 102,999,504 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039086186   ⟹   XP_038942114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810100,326,080 - 100,331,664 (-)NCBI
mRatBN7.21099,827,035 - 99,832,619 (-)NCBI
RefSeq Acc Id: NP_001128006   ⟸   NM_001134534
- Peptide Label: precursor
- Sequence:
RefSeq Acc Id: XP_006247754   ⟸   XM_006247692
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000004191   ⟸   ENSRNOT00000004191
RefSeq Acc Id: XP_038942114   ⟸   XM_039086186
- Peptide Label: isoform X1
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A8L9-F1-model_v2 AlphaFold D4A8L9 1-507 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563331 AgrOrtholog
BioCyc Gene G2FUF-22727 BioCyc
Ensembl Genes ENSRNOG00000003109 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004191 ENTREZGENE
  ENSRNOT00000004191.5 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB-POZ/Galectin-3-binding UniProtKB/TrEMBL
  BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  TRAF_BTBD17 UniProtKB/TrEMBL
KEGG Report rno:303660 UniProtKB/TrEMBL
NCBI Gene 303660 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 17 UniProtKB/TrEMBL
  HL07962P-RELATED UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  TRAF_BTBD17 UniProtKB/TrEMBL
PhenoGen Btbd17 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003109 RatGTEx
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
UniProt A6HKJ0 ENTREZGENE, UniProtKB/TrEMBL
  A6HKJ1_RAT UniProtKB/TrEMBL
  D4A8L9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Btbd17  BTB domain containing 17  Btbd17  BTB (POZ) domain containing 17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-16 Btbd17  BTB (POZ) domain containing 17  RGD1563331  similar to CG1841-PA, isoform A   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1563331  similar to CG1841-PA, isoform A   RGD1563331_predicted  similar to CG1841-PA, isoform A (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563331_predicted  similar to CG1841-PA, isoform A (predicted)  LOC303660  similar to CG1841-PA, isoform A  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC303660  similar to CG1841-PA, isoform A      Symbol and Name status set to provisional 70820 PROVISIONAL