BTBD17 (BTB domain containing 17) - Rat Genome Database

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Gene: BTBD17 (BTB domain containing 17) Canis lupus familiaris
Analyze
Symbol: BTBD17
Name: BTB domain containing 17
RGD ID: 12202543
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BTB/POZ domain-containing protein 17
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,046,811 - 6,052,843 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl96,047,911 - 6,052,088 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,668,812 - 6,674,822 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,719,394 - 6,725,404 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,720,247 - 6,724,688 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,759,917 - 6,765,926 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,863,516 - 6,869,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,923,390 - 6,929,270 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
BTBD17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,046,811 - 6,052,843 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl96,047,911 - 6,052,088 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,668,812 - 6,674,822 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,719,394 - 6,725,404 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,720,247 - 6,724,688 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,759,917 - 6,765,926 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,863,516 - 6,869,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,923,390 - 6,929,270 (+)NCBIUU_Cfam_GSD_1.0
BTBD17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,356,416 - 74,363,327 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,356,416 - 74,361,868 (-)EnsemblGRCh38hg38GRCh38
GRCh371772,352,555 - 72,358,007 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361769,864,150 - 69,869,553 (-)NCBINCBI36Build 36hg18NCBI36
Celera1768,945,277 - 68,950,680 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1767,762,254 - 67,767,273 (-)NCBIHuRef
CHM1_11772,417,197 - 72,422,598 (-)NCBICHM1_1
T2T-CHM13v2.01775,247,050 - 75,253,964 (-)NCBIT2T-CHM13v2.0
Btbd17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,681,495 - 114,692,738 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,682,043 - 114,686,771 (-)EnsemblGRCm39 Ensembl
GRCm3811114,790,669 - 114,801,916 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,791,217 - 114,795,945 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711114,651,983 - 114,657,206 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,606,759 - 114,611,982 (-)NCBIMGSCv36mm8
Celera11126,551,653 - 126,556,876 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.54NCBI
Btbd17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,325,177 - 100,331,669 (-)NCBIGRCr8
mRatBN7.21099,826,132 - 99,832,624 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1099,826,132 - 99,832,624 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10104,884,580 - 104,891,092 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010104,347,701 - 104,354,213 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01099,747,201 - 99,753,689 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,334,052 - 103,341,820 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,334,052 - 103,340,922 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010102,991,771 - 102,999,504 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410104,674,002 - 104,680,503 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1098,416,268 - 98,422,760 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Btbd17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,247,702 - 1,252,581 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,247,702 - 1,271,777 (-)NCBIChiLan1.0ChiLan1.0
BTBD17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,386,874 - 90,402,269 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,209,808 - 95,225,216 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,295,368 - 68,302,595 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11773,853,405 - 73,858,760 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1773,853,645 - 73,858,684 (-)Ensemblpanpan1.1panPan2
Btbd17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,628,736 - 6,633,081 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936655126,622 - 130,898 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936655126,645 - 130,898 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTBD17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,770,172 - 6,775,152 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,770,105 - 6,775,595 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,735,809 - 6,741,912 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BTBD17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11647,262,362 - 47,277,915 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1647,272,495 - 47,277,672 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607718,075,667 - 18,091,150 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Btbd17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,319,607 - 4,324,214 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,319,216 - 4,325,131 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BTBD17
128 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 8 11 3
Low 5 3 1 8 2
Below cutoff 5 11 6 6 6 6 6 5 6

Sequence


RefSeq Acc Id: ENSCAFT00000007324   ⟹   ENSCAFP00000006785
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl96,047,911 - 6,052,088 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845033049   ⟹   ENSCAFP00845025868
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl96,720,247 - 6,724,688 (+)Ensembl
RefSeq Acc Id: XM_038485004   ⟹   XP_038340932
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.196,759,917 - 6,765,926 (+)NCBI
RefSeq Acc Id: XM_038546704   ⟹   XP_038402632
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.096,923,390 - 6,929,270 (+)NCBI
RefSeq Acc Id: XM_038610695   ⟹   XP_038466623
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.096,863,516 - 6,869,577 (+)NCBI
RefSeq Acc Id: XM_038675824   ⟹   XP_038531752
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.096,719,394 - 6,725,404 (+)NCBI
RefSeq Acc Id: XM_540405   ⟹   XP_540405
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.196,047,546 - 6,052,843 (+)NCBI
Dog10K_Boxer_Tasha96,668,812 - 6,674,822 (+)NCBI
Sequence:
RefSeq Acc Id: XP_540405   ⟸   XM_540405
- UniProtKB: A0A8C0LC83 (UniProtKB/TrEMBL),   A0A8C0Q822 (UniProtKB/TrEMBL),   A0A8I3P193 (UniProtKB/TrEMBL),   A0A8C0LYS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000006785   ⟸   ENSCAFT00000007324
RefSeq Acc Id: XP_038340932   ⟸   XM_038485004
RefSeq Acc Id: XP_038466623   ⟸   XM_038610695
RefSeq Acc Id: XP_038531752   ⟸   XM_038675824
- UniProtKB: A0A8C0LC83 (UniProtKB/TrEMBL),   A0A8C0Q822 (UniProtKB/TrEMBL),   A0A8I3P193 (UniProtKB/TrEMBL),   A0A8C0LYS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402632   ⟸   XM_038546704
- UniProtKB: A0A8C0LC83 (UniProtKB/TrEMBL),   A0A8C0LYS6 (UniProtKB/TrEMBL),   A0A8C0Q822 (UniProtKB/TrEMBL),   A0A8I3P193 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845025868   ⟸   ENSCAFT00845033049
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004553 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002284 UniProtKB/TrEMBL
  ENSCAFG00040004259 UniProtKB/TrEMBL
  ENSCAFG00845018705 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007324.3 UniProtKB/TrEMBL
  ENSCAFT00030004196.1 UniProtKB/TrEMBL
  ENSCAFT00040008146.1 UniProtKB/TrEMBL
  ENSCAFT00845033049 ENTREZGENE
  ENSCAFT00845033049.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
KEGG Report cfa:483286 UniProtKB/TrEMBL
NCBI Gene BTBD17 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 17 UniProtKB/TrEMBL
  HL07962P-RELATED UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
UniProt A0A8C0LC83 ENTREZGENE
  A0A8C0LYS6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q822 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P193 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38549 ENTREZGENE